Wall clock time and date at job start Mon Mar 30 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47247 * 2 1 4 4 O 1.21250 * 119.99783 * 0.02562 * 3 2 1 5 5 C 1.47215 * 119.99848 * 179.97438 * 3 2 1 6 6 C 1.39328 * 120.05711 * 0.02562 * 5 3 2 7 7 C 1.40425 * 119.56752 * 180.02562 * 6 5 3 8 8 C 1.41442 * 120.16572 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00086 * 24.52964 * 8 7 6 10 10 C 1.39934 * 120.00102 * 204.52840 * 8 7 6 11 11 N 1.30828 * 119.99908 * 17.88996 * 10 8 7 12 12 Si 1.86797 * 119.99971 * 197.89153 * 10 8 7 13 13 H 1.48508 * 109.47213 * 90.00044 * 12 10 8 14 14 H 1.48506 * 109.47225 * 209.99955 * 12 10 8 15 15 H 1.48503 * 109.47432 * 329.99938 * 12 10 8 16 16 C 1.40811 * 119.66720 * 359.97438 * 7 6 5 17 17 C 1.37754 * 120.09745 * 0.02562 * 16 7 6 18 18 C 1.38297 * 120.44703 * 359.71062 * 17 16 7 19 19 C 1.50697 * 119.83661 * 180.28149 * 18 17 16 20 20 F 1.39903 * 109.47149 * 0.28101 * 19 18 17 21 21 F 1.39895 * 109.47272 * 120.28480 * 19 18 17 22 22 F 1.39902 * 109.47202 * 240.28092 * 19 18 17 23 23 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47261 * 299.99818 * 1 2 3 25 25 H 1.08999 * 109.47535 * 59.99622 * 1 2 3 26 26 H 1.09001 * 109.46808 * 239.99906 * 2 1 3 27 27 H 1.08999 * 109.47110 * 120.00705 * 2 1 3 28 28 H 1.08006 * 120.21406 * 359.97210 * 6 5 3 29 29 H 0.96996 * 119.99937 * 180.02562 * 11 10 8 30 30 H 1.08005 * 119.94718 * 180.02562 * 16 7 6 31 31 H 1.08002 * 119.77390 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2444 2.3424 0.0005 5 6 3.4797 1.6898 0.0006 6 6 4.3861 0.6316 0.0006 7 6 5.7645 0.8999 0.0017 8 6 6.6958 -0.1646 0.0011 9 1 6.4112 -1.1309 -0.3883 10 6 7.9860 0.0342 0.5052 11 7 8.2343 1.0572 1.2820 12 14 9.3536 -1.1610 0.0689 13 1 10.0350 -0.7032 -1.1687 14 1 10.3349 -1.2182 1.1820 15 1 8.7783 -2.5118 -0.1537 16 6 6.2148 2.2341 0.0022 17 6 5.3065 3.2698 0.0022 18 6 3.9481 3.0105 -0.0044 19 6 2.9666 4.1541 -0.0107 20 9 3.6638 5.3670 -0.0151 21 9 2.1639 4.0733 -1.1536 22 9 2.1609 4.0834 1.1308 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 4.0309 -0.3883 0.0006 29 1 9.1287 1.1952 1.6311 30 1 7.2739 2.4456 0.0026 31 1 5.6577 4.2911 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514263264.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:22 Heat of formation + Delta-G solvation = -196.937996 kcal Electronic energy + Delta-G solvation = -21159.175418 eV Core-core repulsion = 17375.376237 eV Total energy + Delta-G solvation = -3783.799181 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.86357 -48.44460 -48.26446 -40.80654 -38.98596 -35.79634 -33.92338 -32.45857 -31.74917 -28.62227 -26.32781 -25.23230 -23.71644 -22.25524 -20.75739 -19.47125 -19.19189 -18.95861 -18.71008 -17.23109 -16.81213 -16.39970 -16.15990 -15.33554 -15.24639 -15.23995 -15.07903 -14.83812 -14.73699 -14.52690 -14.40915 -14.07599 -13.98442 -13.44716 -13.04331 -12.97585 -12.91194 -12.67837 -12.51958 -12.19253 -12.03635 -11.97801 -11.56142 -11.16825 -10.53457 -9.74415 -9.62850 -8.80721 -6.53726 -0.07268 0.67574 1.41790 1.46364 1.56909 1.75196 2.04656 2.17324 2.55347 3.10013 3.28362 3.41883 3.45752 3.82487 4.09323 4.24416 4.31747 4.41478 4.76356 4.85021 4.86447 4.97884 5.04020 5.10038 5.17618 5.34403 5.38675 5.44406 5.72831 5.87549 6.00294 6.45030 6.62043 6.71402 6.74582 8.15608 Molecular weight = 272.08amu Principal moments of inertia in cm(-1) A = 0.021453 B = 0.006413 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.864875 B = 4365.029594 C = 5415.268509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C 0.382 3.618 4 O -0.480 6.480 5 C -0.109 4.109 6 C -0.166 4.166 7 C 0.087 3.913 8 C -0.463 4.463 9 H 0.100 0.900 10 C 0.036 3.964 11 N -0.805 5.805 12 Si 0.987 3.013 13 H -0.263 1.263 14 H -0.271 1.271 15 H -0.250 1.250 16 C -0.171 4.171 17 C -0.069 4.069 18 C -0.291 4.291 19 C 0.524 3.476 20 F -0.193 7.193 21 F -0.187 7.187 22 F -0.189 7.189 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.296 0.704 30 H 0.118 0.882 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -4.111 -1.842 5.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C 0.262 3.738 4 O -0.357 6.357 5 C -0.110 4.110 6 C -0.185 4.185 7 C 0.084 3.916 8 C -0.490 4.490 9 H 0.118 0.882 10 C -0.182 4.182 11 N -0.428 5.428 12 Si 0.807 3.193 13 H -0.188 1.188 14 H -0.196 1.196 15 H -0.173 1.173 16 C -0.191 4.191 17 C -0.087 4.087 18 C -0.294 4.294 19 C 0.470 3.530 20 F -0.175 7.175 21 F -0.169 7.169 22 F -0.171 7.171 23 H 0.107 0.893 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.161 0.839 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.995 -3.490 -1.679 5.564 hybrid contribution 0.702 0.361 0.076 0.793 sum -3.293 -3.129 -1.603 4.818 Atomic orbital electron populations 1.21569 0.93153 1.02867 1.01820 1.21968 0.98369 0.92945 1.06297 1.23260 0.87513 0.93026 0.70004 1.90508 1.58966 1.48735 1.37509 1.20075 0.95081 0.92698 1.03176 1.21589 0.91937 0.97566 1.07456 1.18072 0.92502 0.93382 0.87653 1.20129 0.96035 0.98576 1.34244 0.88194 1.26905 1.02056 0.97676 0.91604 1.69834 1.24435 1.27745 1.20830 0.85102 0.76464 0.78872 0.78865 1.18791 1.19577 1.17328 1.21435 0.98878 0.92382 1.06357 1.20583 0.91212 0.99305 0.97645 1.19499 0.93249 0.91723 1.24944 1.18137 0.79745 0.81731 0.73390 1.93055 1.79258 1.48790 1.96391 1.93106 1.75808 1.96331 1.51614 1.93110 1.75702 1.96398 1.51841 0.89324 0.93488 0.93314 0.86431 0.86725 0.83932 0.89280 0.86439 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.20 71.98 0.66 -2.61 16 2 C -0.16 -4.23 5.02 29.85 0.15 -4.08 16 3 C 0.38 14.40 6.93 28.05 0.19 14.59 16 4 O -0.48 -20.37 10.88 -2.94 -0.03 -20.41 16 5 C -0.11 -4.65 5.83 -20.20 -0.12 -4.76 16 6 C -0.17 -6.91 9.21 23.07 0.21 -6.70 16 7 C 0.09 4.07 5.57 -21.33 -0.12 3.95 16 8 C -0.46 -20.83 9.05 23.47 0.21 -20.62 16 9 H 0.10 4.12 7.91 -2.91 -0.02 4.09 16 10 C 0.04 1.56 5.13 85.25 0.44 2.00 16 11 N -0.80 -36.91 10.96 21.82 0.24 -36.67 16 12 Si 0.99 32.36 29.59 68.60 2.03 34.39 16 13 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 14 H -0.27 -8.66 7.11 99.48 0.71 -7.95 16 15 H -0.25 -7.80 7.11 99.48 0.71 -7.09 16 16 C -0.17 -8.20 8.69 22.78 0.20 -8.00 16 17 C -0.07 -3.16 9.39 22.17 0.21 -2.95 16 18 C -0.29 -13.30 5.43 -19.39 -0.11 -13.40 16 19 C 0.52 23.21 2.78 71.24 0.20 23.41 16 20 F -0.19 -8.08 15.95 44.97 0.72 -7.36 16 21 F -0.19 -8.35 15.01 44.97 0.67 -7.67 16 22 F -0.19 -8.57 14.99 44.97 0.67 -7.90 16 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 25 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 26 H 0.12 2.67 8.08 -2.39 -0.02 2.65 16 27 H 0.11 2.70 8.08 -2.39 -0.02 2.68 16 28 H 0.14 4.93 7.04 -2.91 -0.02 4.91 16 29 H 0.30 12.22 8.30 -92.71 -0.77 11.45 16 30 H 0.12 5.79 6.15 -2.91 -0.02 5.77 16 31 H 0.12 4.96 7.13 -2.91 -0.02 4.94 16 Total: -1.00 -54.84 277.96 7.61 -47.23 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.17 Total: 17.56 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 2.13 Total: -19.17 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.24 Total: -36.67 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.03 Total: -20.41 kcal Atomic # 9 Polarization: -25.00 SS G_CDS: 2.07 Total: -22.93 kcal Atomic # 14 Polarization: 32.36 SS G_CDS: 2.03 Total: 34.39 kcal Total: -54.84 7.61 -47.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514263264.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.710 kcal (2) G-P(sol) polarization free energy of solvation -54.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds