Wall clock time and date at job start Mon Mar 30 2020 07:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86801 * 119.99925 * 2 1 4 4 H 1.48498 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47038 * 300.00228 * 3 2 1 6 6 H 1.48497 * 109.46981 * 59.99800 * 3 2 1 7 7 C 1.39862 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00068 * 197.96322 * 7 2 1 9 9 C 1.41142 * 120.00342 * 17.95755 * 7 2 1 10 10 C 1.40884 * 120.15830 * 204.59888 * 9 7 2 11 11 C 1.36336 * 119.83630 * 180.02562 * 10 9 7 12 12 C 1.39560 * 120.16245 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.84236 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99871 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46907 * 179.97438 * 14 13 12 16 16 C 1.38237 * 119.58608 * 95.00242 * 15 14 13 17 17 C 1.38592 * 119.18856 * 179.97438 * 16 15 14 18 18 C 1.38883 * 118.39884 * 0.25086 * 17 16 15 19 19 F 1.35098 * 120.44145 * 179.74764 * 18 17 16 20 20 C 1.38420 * 119.11271 * 359.48208 * 18 17 16 21 21 N 1.31840 * 119.59318 * 274.97737 * 15 14 13 22 22 C 1.39567 * 120.31739 * 0.25121 * 12 11 10 23 23 C 1.36339 * 120.15853 * 359.48192 * 22 12 11 24 24 H 0.96997 * 119.99798 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.07646 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.91655 * 179.97438 * 11 10 9 27 27 H 0.96991 * 120.00009 * 0.02562 * 13 12 11 28 28 H 1.08997 * 109.46915 * 60.00168 * 14 13 12 29 29 H 1.09000 * 109.47364 * 299.99920 * 14 13 12 30 30 H 1.07997 * 120.41088 * 0.02562 * 16 15 14 31 31 H 1.08005 * 120.80181 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.63941 * 180.24828 * 20 18 17 33 33 H 1.08001 * 119.92591 * 179.72677 * 22 12 11 34 34 H 1.07995 * 120.08601 * 180.23443 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8843 2.3965 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0490 -1.2342 0.2879 9 6 1.3543 -2.4037 -0.3779 10 6 1.8268 -3.6473 0.0857 11 6 1.1903 -4.7951 -0.2834 12 6 0.0736 -4.7402 -1.1187 13 7 -0.5693 -5.9134 -1.4909 14 6 -1.7422 -5.8596 -2.3671 15 6 -2.2468 -7.2575 -2.6171 16 6 -3.2643 -7.7664 -1.8319 17 6 -3.7225 -9.0526 -2.0694 18 6 -3.1327 -9.7858 -3.0909 19 9 -3.5437 -11.0454 -3.3547 20 6 -2.1220 -9.2067 -3.8387 21 7 -1.7127 -7.9796 -3.5823 22 6 -0.3966 -3.5122 -1.5865 23 6 0.2267 -2.3559 -1.2212 24 1 -0.4850 0.8400 0.0004 25 1 2.6911 -3.6913 0.7318 26 1 1.5516 -5.7492 0.0709 27 1 -0.2423 -6.7683 -1.1701 28 1 -1.4664 -5.3983 -3.3154 29 1 -2.5253 -5.2701 -1.8904 30 1 -3.6976 -7.1687 -1.0437 31 1 -4.5159 -9.4763 -1.4715 32 1 -1.6602 -9.7677 -4.6377 33 1 -1.2586 -3.4774 -2.2362 34 1 -0.1404 -1.4061 -1.5808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705878153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:25 Heat of formation + Delta-G solvation = 14.140539 kcal Electronic energy + Delta-G solvation = -18881.272190 eV Core-core repulsion = 15693.148342 eV Total energy + Delta-G solvation = -3188.123848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.26938 -40.41381 -37.91365 -35.22552 -33.20922 -32.77317 -31.32637 -29.46148 -28.64042 -26.23083 -24.21733 -23.94259 -22.44262 -20.94838 -19.96165 -17.93784 -17.52354 -17.20457 -16.83426 -16.11951 -15.69490 -15.06546 -14.81306 -14.35300 -14.19511 -13.86406 -13.49309 -13.27983 -13.12957 -12.69987 -12.56913 -12.18875 -11.76695 -11.62300 -11.23553 -11.03739 -10.80948 -10.47123 -10.23375 -9.82342 -9.69965 -9.33772 -9.24257 -9.11770 -8.55062 -7.49284 -6.64561 -6.40518 -4.03318 0.57806 0.81009 2.90585 3.10476 3.16144 3.21618 3.27363 3.34881 3.70505 4.03312 4.06179 4.32419 4.44107 4.52406 4.61046 4.76983 5.13435 5.38550 5.49892 5.57087 5.80379 5.85346 5.96685 6.26649 6.30563 6.33683 6.89455 6.93753 7.20139 7.35765 7.53424 7.60790 7.68929 7.83255 8.15675 8.27657 8.47153 8.66736 8.78896 9.06524 9.15013 10.37395 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.055369 B = 0.002997 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.573521 B = 9341.130823 C = 9522.820260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.075 3.925 10 C -0.187 4.187 11 C -0.156 4.156 12 C 0.091 3.909 13 N -0.754 5.754 14 C 0.189 3.811 15 C 0.113 3.887 16 C -0.125 4.125 17 C -0.111 4.111 18 C 0.043 3.957 19 F -0.132 7.132 20 C 0.075 3.925 21 N -0.441 5.441 22 C -0.163 4.163 23 C -0.125 4.125 24 H 0.275 0.725 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.385 0.615 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.167 0.833 33 H 0.089 0.911 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 -13.745 -4.560 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.207 4.207 11 C -0.178 4.178 12 C -0.005 4.005 13 N -0.391 5.391 14 C 0.064 3.936 15 C -0.025 4.025 16 C -0.146 4.146 17 C -0.137 4.137 18 C 0.021 3.979 19 F -0.111 7.111 20 C -0.084 4.084 21 N -0.150 5.150 22 C -0.185 4.185 23 C -0.144 4.144 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.217 0.783 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.107 0.893 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.597 -13.139 -5.167 16.032 hybrid contribution -0.410 -0.252 0.631 0.793 sum -8.007 -13.390 -4.536 16.248 Atomic orbital electron populations 1.69865 1.07355 1.28509 1.37730 1.25797 0.94660 1.00899 0.92714 0.86369 0.81012 0.81592 0.78306 1.18635 1.19958 1.20301 1.19404 0.97947 0.91363 1.40990 0.90898 1.17510 0.92389 0.91992 0.90887 1.20541 1.02685 0.92581 1.04880 1.19789 0.97716 0.97074 1.03198 1.17299 0.95878 0.85301 1.02040 1.43677 1.32403 1.06147 1.56866 1.19844 0.89543 0.88591 0.95669 1.21611 0.92844 0.96998 0.91060 1.22048 0.97251 0.95099 1.00186 1.21690 1.00420 0.94742 0.96865 1.18871 0.98695 0.81321 0.99010 1.91519 1.89423 1.36883 1.93280 1.22962 0.94087 0.92164 0.99204 1.67639 1.25859 1.05042 1.16421 1.20087 1.01735 0.91882 1.04762 1.20931 0.98203 0.96444 0.98870 0.91386 0.89021 0.89624 0.78299 0.91332 0.91467 0.83300 0.83438 0.81557 0.89326 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.27 10.97 55.54 0.61 -20.66 16 2 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 3 Si 0.90 19.17 29.60 -169.99 -5.03 14.14 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.47 -12.62 9.03 -37.87 -0.34 -12.97 16 8 H 0.07 1.92 7.91 -52.48 -0.41 1.50 16 9 C 0.08 2.02 5.57 -106.79 -0.60 1.43 16 10 C -0.19 -4.61 9.74 -39.27 -0.38 -4.99 16 11 C -0.16 -3.49 9.82 -39.77 -0.39 -3.88 16 12 C 0.09 1.97 6.67 -83.69 -0.56 1.41 16 13 N -0.75 -13.05 5.69 -59.67 -0.34 -13.39 16 14 C 0.19 2.77 5.20 -5.19 -0.03 2.75 16 15 C 0.11 1.42 6.15 -82.59 -0.51 0.91 16 16 C -0.13 -1.27 9.72 -39.45 -0.38 -1.65 16 17 C -0.11 -1.00 10.16 -39.21 -0.40 -1.40 16 18 C 0.04 0.43 7.35 -39.28 -0.29 0.14 16 19 F -0.13 -1.32 17.28 2.25 0.04 -1.28 16 20 C 0.08 0.80 11.17 -17.47 -0.20 0.60 16 21 N -0.44 -5.76 10.27 -9.42 -0.10 -5.86 16 22 C -0.16 -3.75 9.23 -39.77 -0.37 -4.11 16 23 C -0.12 -3.23 8.64 -39.26 -0.34 -3.57 16 24 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 25 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 26 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.38 6.20 8.46 -40.82 -0.35 5.85 16 28 H 0.07 1.08 7.91 -51.93 -0.41 0.66 16 29 H 0.07 0.94 7.84 -51.93 -0.41 0.53 16 30 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.09 1.83 6.68 -52.49 -0.35 1.48 16 34 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 LS Contribution 302.25 15.07 4.55 4.55 Total: -1.00 -28.78 302.25 -8.63 -37.41 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -3.50 Total: 8.59 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -4.86 Total: -23.52 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.17 Total: -39.90 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.78 -8.63 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705878153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.555 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds