Wall clock time and date at job start Mon Mar 30 2020 07:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86801 * 119.99925 * 2 1 4 4 H 1.48498 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47038 * 300.00228 * 3 2 1 6 6 H 1.48497 * 109.46981 * 59.99800 * 3 2 1 7 7 C 1.39862 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00068 * 197.96322 * 7 2 1 9 9 C 1.41142 * 120.00342 * 17.95755 * 7 2 1 10 10 C 1.40884 * 120.15830 * 204.59888 * 9 7 2 11 11 C 1.36336 * 119.83630 * 180.02562 * 10 9 7 12 12 C 1.39560 * 120.16245 * 0.02562 * 11 10 9 13 13 N 1.38858 * 119.84236 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99871 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46907 * 179.97438 * 14 13 12 16 16 C 1.38237 * 119.58608 * 95.00242 * 15 14 13 17 17 C 1.38592 * 119.18856 * 179.97438 * 16 15 14 18 18 C 1.38883 * 118.39884 * 0.25086 * 17 16 15 19 19 F 1.35098 * 120.44145 * 179.74764 * 18 17 16 20 20 C 1.38420 * 119.11271 * 359.48208 * 18 17 16 21 21 N 1.31840 * 119.59318 * 274.97737 * 15 14 13 22 22 C 1.39567 * 120.31739 * 0.25121 * 12 11 10 23 23 C 1.36339 * 120.15853 * 359.48192 * 22 12 11 24 24 H 0.96997 * 119.99798 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.07646 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.91655 * 179.97438 * 11 10 9 27 27 H 0.96991 * 120.00009 * 0.02562 * 13 12 11 28 28 H 1.08997 * 109.46915 * 60.00168 * 14 13 12 29 29 H 1.09000 * 109.47364 * 299.99920 * 14 13 12 30 30 H 1.07997 * 120.41088 * 0.02562 * 16 15 14 31 31 H 1.08005 * 120.80181 * 179.97438 * 17 16 15 32 32 H 1.08002 * 119.63941 * 180.24828 * 20 18 17 33 33 H 1.08001 * 119.92591 * 179.72677 * 22 12 11 34 34 H 1.07995 * 120.08601 * 180.23443 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8843 2.3965 -1.2125 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2112 -0.0005 8 1 3.0490 -1.2342 0.2879 9 6 1.3543 -2.4037 -0.3779 10 6 1.8268 -3.6473 0.0857 11 6 1.1903 -4.7951 -0.2834 12 6 0.0736 -4.7402 -1.1187 13 7 -0.5693 -5.9134 -1.4909 14 6 -1.7422 -5.8596 -2.3671 15 6 -2.2468 -7.2575 -2.6171 16 6 -3.2643 -7.7664 -1.8319 17 6 -3.7225 -9.0526 -2.0694 18 6 -3.1327 -9.7858 -3.0909 19 9 -3.5437 -11.0454 -3.3547 20 6 -2.1220 -9.2067 -3.8387 21 7 -1.7127 -7.9796 -3.5823 22 6 -0.3966 -3.5122 -1.5865 23 6 0.2267 -2.3559 -1.2212 24 1 -0.4850 0.8400 0.0004 25 1 2.6911 -3.6913 0.7318 26 1 1.5516 -5.7492 0.0709 27 1 -0.2423 -6.7683 -1.1701 28 1 -1.4664 -5.3983 -3.3154 29 1 -2.5253 -5.2701 -1.8904 30 1 -3.6976 -7.1687 -1.0437 31 1 -4.5159 -9.4763 -1.4715 32 1 -1.6602 -9.7677 -4.6377 33 1 -1.2586 -3.4774 -2.2362 34 1 -0.1404 -1.4061 -1.5808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705878153.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:25 Heat of formation + Delta-G solvation = -1.952608 kcal Electronic energy + Delta-G solvation = -18881.970041 eV Core-core repulsion = 15693.148342 eV Total energy + Delta-G solvation = -3188.821699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.04488 -41.28102 -39.67337 -36.79763 -34.92477 -33.57055 -32.56774 -31.32932 -30.28181 -27.59524 -25.70199 -24.94169 -23.60339 -22.65730 -21.68591 -19.13386 -18.72090 -18.34999 -18.17551 -17.10053 -16.88743 -16.74763 -16.14418 -15.59901 -15.26331 -15.01348 -14.69327 -14.56160 -14.39227 -14.14366 -13.99183 -13.74561 -13.50144 -13.09247 -12.79192 -12.72391 -12.56208 -12.25925 -11.55790 -11.17652 -11.06910 -11.00695 -10.66695 -10.30771 -9.99388 -9.38261 -8.53582 -8.16842 -5.99115 -0.25666 0.05119 1.11947 1.20611 1.42025 1.55912 1.59504 2.29183 2.37431 2.85993 2.89608 3.06462 3.24367 3.58094 3.74958 3.81667 3.88025 4.27004 4.46638 4.51687 4.55585 4.65556 4.77651 4.81724 4.96540 5.05786 5.14861 5.29372 5.47412 5.53388 5.69400 5.81076 5.97431 6.21088 6.40436 6.66766 6.76468 6.86844 7.10440 7.11549 7.28637 8.50032 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.055369 B = 0.002997 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.573521 B = 9341.130823 C = 9522.820260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.032 3.968 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.036 3.964 10 C -0.196 4.196 11 C -0.164 4.164 12 C 0.113 3.887 13 N -0.744 5.744 14 C 0.189 3.811 15 C 0.096 3.904 16 C -0.120 4.120 17 C -0.102 4.102 18 C 0.045 3.955 19 F -0.131 7.131 20 C 0.069 3.931 21 N -0.470 5.470 22 C -0.171 4.171 23 C -0.143 4.143 24 H 0.282 0.718 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.394 0.606 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.168 0.832 31 H 0.178 0.822 32 H 0.185 0.815 33 H 0.109 0.891 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 -15.287 -4.564 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.180 4.180 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.536 4.536 8 H 0.085 0.915 9 C 0.033 3.967 10 C -0.216 4.216 11 C -0.186 4.186 12 C 0.014 3.986 13 N -0.380 5.380 14 C 0.064 3.936 15 C -0.041 4.041 16 C -0.140 4.140 17 C -0.128 4.128 18 C 0.023 3.977 19 F -0.110 7.110 20 C -0.090 4.090 21 N -0.179 5.179 22 C -0.193 4.193 23 C -0.163 4.163 24 H 0.093 0.907 25 H 0.114 0.886 26 H 0.133 0.867 27 H 0.227 0.773 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.185 0.815 31 H 0.195 0.805 32 H 0.202 0.798 33 H 0.127 0.873 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.655 -14.728 -5.180 17.851 hybrid contribution -0.188 -0.035 0.574 0.605 sum -8.843 -14.763 -4.607 17.814 Atomic orbital electron populations 1.69918 1.08650 1.29714 1.38488 1.26588 0.95477 1.04002 0.91900 0.85267 0.79368 0.76982 0.78678 1.18583 1.19155 1.19345 1.19609 0.97973 0.92800 1.43242 0.91546 1.17831 0.93582 0.92983 0.92290 1.20738 1.03053 0.92849 1.04969 1.20071 0.97768 0.97572 1.03162 1.17385 0.94981 0.86271 0.99981 1.43711 1.32678 1.05080 1.56486 1.19885 0.88616 0.90629 0.94497 1.21315 0.94315 0.96139 0.92358 1.22186 0.96257 0.95620 0.99906 1.22001 1.00419 0.94026 0.96348 1.18946 0.98408 0.81330 0.99029 1.91528 1.89338 1.36840 1.93284 1.23235 0.94401 0.91577 0.99800 1.67551 1.27013 1.06160 1.17163 1.20256 1.02306 0.91646 1.05138 1.20869 0.98879 0.96789 0.99792 0.90746 0.88586 0.86714 0.77261 0.92574 0.90407 0.81458 0.80476 0.79785 0.87284 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.49 10.97 21.82 0.24 -45.25 16 2 C 0.03 1.70 5.13 85.22 0.44 2.14 16 3 Si 0.98 40.11 29.60 68.60 2.03 42.14 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.50 -28.42 9.03 23.38 0.21 -28.21 16 8 H 0.07 3.65 7.91 -2.91 -0.02 3.63 16 9 C 0.04 2.00 5.57 -21.27 -0.12 1.88 16 10 C -0.20 -9.82 9.74 22.47 0.22 -9.60 16 11 C -0.16 -7.16 9.82 22.15 0.22 -6.94 16 12 C 0.11 4.73 6.67 38.67 0.26 4.99 16 13 N -0.74 -24.26 5.69 -342.71 -1.95 -26.21 16 14 C 0.19 5.21 5.20 85.63 0.44 5.65 16 15 C 0.10 2.22 6.15 42.56 0.26 2.48 16 16 C -0.12 -2.04 9.72 22.35 0.22 -1.82 16 17 C -0.10 -1.47 10.16 22.51 0.23 -1.25 16 18 C 0.04 0.76 7.35 22.47 0.17 0.93 16 19 F -0.13 -2.25 17.28 44.97 0.78 -1.48 16 20 C 0.07 1.32 11.17 84.73 0.95 2.27 16 21 N -0.47 -11.48 10.27 -183.71 -1.89 -13.37 16 22 C -0.17 -7.88 9.23 22.15 0.20 -7.68 16 23 C -0.14 -7.67 8.64 22.48 0.19 -7.47 16 24 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 25 H 0.10 4.57 8.06 -2.91 -0.02 4.55 16 26 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 27 H 0.39 11.69 8.46 -92.72 -0.78 10.91 16 28 H 0.06 1.71 7.91 -2.39 -0.02 1.69 16 29 H 0.08 2.00 7.84 -2.39 -0.02 1.98 16 30 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 31 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.11 4.45 6.68 -2.91 -0.02 4.43 16 34 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 Total: -1.00 -63.43 302.25 3.45 -59.98 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.35 Total: 26.83 kcal Atomic # 6 Polarization: -46.53 SS G_CDS: 3.89 Total: -42.65 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -3.60 Total: -84.83 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -63.43 3.45 -59.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705878153.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.030 kcal (2) G-P(sol) polarization free energy of solvation -63.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds