Wall clock time and date at job start Mon Mar 30 2020 07:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46808 * 2 1 4 4 C 1.38315 * 119.87682 * 90.00266 * 3 2 1 5 5 C 1.38021 * 120.11758 * 179.97438 * 4 3 2 6 6 C 1.39331 * 119.87872 * 0.02562 * 5 4 3 7 7 C 1.48425 * 120.11868 * 179.97438 * 6 5 4 8 8 N 1.30759 * 126.41457 * 0.02562 * 7 6 5 9 9 O 1.21293 * 110.09597 * 179.97438 * 8 7 6 10 10 C 1.33668 * 110.02851 * 0.02562 * 9 8 7 11 11 C 1.50694 * 126.43726 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47322 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.47166 * 299.97507 * 11 10 9 14 14 C 1.50700 * 109.47131 * 59.97225 * 11 10 9 15 15 H 1.07992 * 120.00279 * 0.02562 * 14 11 10 16 16 C 1.37882 * 120.00020 * 179.97438 * 14 11 10 17 17 N 1.31507 * 120.00190 * 179.97438 * 16 14 11 18 18 Si 1.86801 * 119.99657 * 0.02562 * 16 14 11 19 19 H 1.48502 * 109.47376 * 89.99993 * 18 16 14 20 20 H 1.48507 * 109.46857 * 209.99688 * 18 16 14 21 21 H 1.48501 * 109.47225 * 329.99413 * 18 16 14 22 22 N 1.30975 * 107.12408 * 359.97438 * 10 9 8 23 23 C 1.39330 * 119.76071 * 0.24605 * 6 5 4 24 24 C 1.38017 * 119.87469 * 359.51953 * 23 6 5 25 25 H 1.08998 * 109.46892 * 299.99400 * 1 2 3 26 26 H 1.08989 * 109.47464 * 60.00162 * 1 2 3 27 27 H 1.09001 * 109.46929 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46892 * 240.00600 * 2 1 3 29 29 H 1.08989 * 109.47464 * 119.99838 * 2 1 3 30 30 H 1.07997 * 119.94439 * 359.97438 * 4 3 2 31 31 H 1.08003 * 120.06189 * 180.02562 * 5 4 3 32 32 H 1.08992 * 109.46721 * 59.99951 * 13 11 10 33 33 H 1.09001 * 109.47067 * 179.97438 * 13 11 10 34 34 H 1.09000 * 109.46794 * 299.99826 * 13 11 10 35 35 H 0.96996 * 120.00342 * 180.02562 * 17 16 14 36 36 H 1.07994 * 120.05779 * 179.75010 * 23 6 5 37 37 H 1.08003 * 119.93888 * 180.23022 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2620 2.0705 1.1993 5 6 2.7225 3.3716 1.2051 6 6 2.9554 4.0308 -0.0001 7 6 3.4501 5.4302 0.0000 8 7 3.7093 6.1619 1.0522 9 8 4.0976 7.2593 0.7115 10 6 4.1256 7.3411 -0.6224 11 6 4.5477 8.5365 -1.4371 12 1 4.4642 8.3010 -2.4981 13 6 3.6426 9.7249 -1.1058 14 6 5.9766 8.8873 -1.1113 15 1 6.5245 8.3028 -0.3871 16 6 6.5849 9.9538 -1.7387 17 7 7.8317 10.2603 -1.4540 18 14 5.6375 10.9644 -2.9919 19 1 4.9454 12.0838 -2.3039 20 1 6.5797 11.5108 -4.0014 21 1 4.6343 10.1021 -3.6667 22 7 3.7173 6.1871 -1.0883 23 6 2.7170 3.3736 -1.2052 24 6 2.2611 2.0709 -1.1994 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 2.0807 1.5588 2.1329 31 1 2.9019 3.8778 2.1421 32 1 3.7262 9.9604 -0.0449 33 1 3.9482 10.5897 -1.6947 34 1 2.6091 9.4712 -1.3414 35 1 8.2596 11.0108 -1.8951 36 1 2.8920 3.8813 -2.1421 37 1 2.0795 1.5592 -2.1330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594732607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:13 Heat of formation + Delta-G solvation = 78.502131 kcal Electronic energy + Delta-G solvation = -19685.511084 eV Core-core repulsion = 16623.638469 eV Total energy + Delta-G solvation = -3061.872615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.85051 -39.47446 -35.64092 -35.21640 -33.87934 -32.12184 -31.12837 -30.52425 -29.22042 -25.38762 -24.89942 -23.94991 -22.80373 -22.43069 -21.17101 -19.95264 -17.56213 -17.19161 -16.62474 -16.01548 -15.57656 -15.38103 -14.97871 -14.07414 -13.99599 -13.80180 -13.49316 -13.37914 -13.10340 -12.66966 -12.44323 -12.25533 -12.00111 -11.78867 -11.47268 -11.43907 -11.10880 -11.06676 -11.00996 -10.82840 -10.49101 -10.27884 -9.82503 -9.64800 -9.26442 -9.01861 -8.76824 -8.38505 -6.27330 -4.32845 0.84439 1.34284 1.97919 2.88003 3.15537 3.25112 3.28755 3.61171 3.82515 3.93690 4.21848 4.47561 4.56077 4.69652 4.93367 5.01356 5.08367 5.09847 5.29487 5.35614 5.40612 5.56527 5.63542 5.74554 5.83253 5.93689 5.97771 6.02896 6.08531 6.22430 6.28584 6.44881 6.47613 6.52387 6.60506 6.64608 6.86309 7.04810 7.32228 8.20876 8.71004 8.78512 9.27592 10.84757 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.041467 B = 0.003532 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.072253 B = 7925.965989 C = 8098.865853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.074 4.074 4 C -0.122 4.122 5 C -0.084 4.084 6 C -0.010 4.010 7 C 0.195 3.805 8 N -0.395 5.395 9 O 0.081 5.919 10 C 0.252 3.748 11 C 0.095 3.905 12 H 0.076 0.924 13 C -0.152 4.152 14 C -0.529 4.529 15 H 0.081 0.919 16 C 0.082 3.918 17 N -0.885 5.885 18 Si 0.885 3.115 19 H -0.273 1.273 20 H -0.291 1.291 21 H -0.262 1.262 22 N -0.504 5.504 23 C -0.074 4.074 24 C -0.122 4.122 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.270 0.730 36 H 0.136 0.864 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.360 -15.389 1.522 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.075 4.075 4 C -0.140 4.140 5 C -0.104 4.104 6 C -0.012 4.012 7 C -0.075 4.075 8 N -0.105 5.105 9 O 0.023 5.977 10 C 0.034 3.966 11 C 0.074 3.926 12 H 0.094 0.906 13 C -0.210 4.210 14 C -0.567 4.567 15 H 0.099 0.901 16 C -0.123 4.123 17 N -0.521 5.521 18 Si 0.714 3.286 19 H -0.199 1.199 20 H -0.219 1.219 21 H -0.187 1.187 22 N -0.237 5.237 23 C -0.094 4.094 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.386 -15.813 1.997 20.813 hybrid contribution -0.147 0.868 -0.648 1.093 sum -13.532 -14.944 1.349 20.206 Atomic orbital electron populations 1.21752 0.94650 1.01657 1.02390 1.20564 0.96218 0.92534 1.02961 1.20025 0.98046 0.96226 0.93196 1.20892 1.00962 0.94408 0.97732 1.21176 0.97346 0.94553 0.97344 1.17392 1.01733 0.87669 0.94415 1.23843 1.01686 0.97115 0.84854 1.74790 1.18541 0.93562 1.23571 1.85258 1.60538 1.26154 1.25713 1.29327 0.89888 0.96324 0.81089 1.18179 0.97015 0.83677 0.93756 0.90647 1.22221 0.97436 0.98552 1.02796 1.20665 0.93179 1.15993 1.26870 0.90106 1.24871 0.94796 0.96521 0.96064 1.69849 1.11703 1.28415 1.42136 0.86879 0.79488 0.80915 0.81291 1.19929 1.21854 1.18692 1.72022 1.20846 1.02440 1.28377 1.21247 0.96222 0.94201 0.97722 1.20953 1.00841 0.94483 0.97723 0.92502 0.92437 0.92415 0.90887 0.90951 0.85627 0.85221 0.91570 0.92395 0.94225 0.92008 0.84569 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.07 -0.78 5.14 -104.56 -0.54 -1.32 16 4 C -0.12 -1.38 9.68 -39.63 -0.38 -1.76 16 5 C -0.08 -1.19 9.69 -39.25 -0.38 -1.57 16 6 C -0.01 -0.17 5.88 -104.89 -0.62 -0.79 16 7 C 0.19 3.89 7.80 -156.11 -1.22 2.67 16 8 N -0.40 -8.25 11.86 30.97 0.37 -7.88 16 9 O 0.08 1.79 11.29 18.04 0.20 2.00 16 10 C 0.25 5.61 6.94 -12.99 -0.09 5.52 16 11 C 0.09 2.16 2.36 -92.92 -0.22 1.94 16 12 H 0.08 1.71 7.20 -51.93 -0.37 1.33 16 13 C -0.15 -3.06 8.66 37.16 0.32 -2.74 16 14 C -0.53 -14.21 9.13 -34.44 -0.31 -14.52 16 15 H 0.08 2.41 7.98 -52.49 -0.42 1.99 16 16 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 17 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 18 Si 0.89 20.15 24.37 -169.99 -4.14 16.01 16 19 H -0.27 -5.96 6.87 56.52 0.39 -5.57 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.26 -5.62 6.53 56.52 0.37 -5.25 16 22 N -0.50 -10.79 11.26 -9.88 -0.11 -10.90 16 23 C -0.07 -1.06 9.70 -39.26 -0.38 -1.44 16 24 C -0.12 -1.40 9.68 -39.63 -0.38 -1.78 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.42 8.14 -51.94 -0.42 -0.01 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.07 0.49 8.08 -51.94 -0.42 0.07 16 30 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.13 1.80 7.87 -52.48 -0.41 1.39 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.18 3.27 -51.93 -0.17 1.01 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.14 1.97 7.88 -52.49 -0.41 1.56 16 37 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 314.81 15.07 4.74 4.74 Total: -1.00 -29.43 314.81 -7.04 -36.47 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.77 Total: -0.32 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -4.10 Total: -15.14 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 1.03 Total: -43.75 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.20 Total: 2.00 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.14 Total: 16.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.43 -7.04 -36.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594732607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.970 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds