Wall clock time and date at job start Mon Mar 30 2020 08:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46800 * 2 1 4 4 C 1.52997 * 109.47124 * 119.99518 * 2 1 3 5 5 N 1.46906 * 109.46902 * 65.00232 * 4 2 1 6 6 C 1.46899 * 111.00055 * 180.02562 * 5 4 2 7 7 C 1.50693 * 109.47126 * 179.97438 * 6 5 4 8 8 C 1.38749 * 119.82053 * 269.97428 * 7 6 5 9 9 C 1.37894 * 120.65172 * 180.02562 * 8 7 6 10 10 C 1.38967 * 119.92007 * 0.02562 * 9 8 7 11 11 C 1.40683 * 119.45504 * 0.02562 * 10 9 8 12 12 C 1.46662 * 106.07859 * 179.97438 * 11 10 9 13 13 C 1.34301 * 107.04840 * 359.73099 * 12 11 10 14 14 N 1.37000 * 109.93334 * 0.43699 * 13 12 11 15 15 C 1.37210 * 125.09412 * 179.81324 * 14 13 12 16 16 H 1.07997 * 119.99739 * 201.09978 * 15 14 13 17 17 C 1.38852 * 119.99647 * 20.81932 * 15 14 13 18 18 N 1.31439 * 120.00447 * 10.98270 * 17 15 14 19 19 Si 1.86800 * 119.99604 * 190.97859 * 17 15 14 20 20 H 1.48500 * 109.47475 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47176 * 120.00331 * 19 17 15 22 22 H 1.48506 * 109.47139 * 240.00387 * 19 17 15 23 23 C 1.37782 * 119.81807 * 90.00235 * 7 6 5 24 24 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47232 * 300.00340 * 1 2 3 26 26 H 1.09003 * 109.47233 * 60.00105 * 1 2 3 27 27 H 1.08994 * 109.47273 * 240.00091 * 2 1 3 28 28 H 1.08999 * 109.47114 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47435 * 299.99495 * 3 2 1 30 30 H 1.09001 * 109.47505 * 59.99828 * 3 2 1 31 31 H 1.08999 * 109.47355 * 305.00448 * 4 2 1 32 32 H 1.08992 * 109.47181 * 185.00064 * 4 2 1 33 33 H 1.00892 * 110.99922 * 56.04563 * 5 4 2 34 34 H 1.09001 * 109.47104 * 60.00033 * 6 5 4 35 35 H 1.09002 * 109.46838 * 300.00060 * 6 5 4 36 36 H 1.08007 * 119.67242 * 0.02562 * 8 7 6 37 37 H 1.08006 * 120.04504 * 180.02562 * 9 8 7 38 38 H 1.08008 * 126.47969 * 180.02562 * 12 11 10 39 39 H 1.08008 * 125.03775 * 180.24453 * 13 12 11 40 40 H 0.96999 * 120.00176 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.17266 * 359.94876 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 1.6514 -2.1366 1.1905 6 6 2.1248 -2.8622 2.3768 7 6 1.7078 -4.3072 2.2814 8 6 0.4884 -4.7096 2.8072 9 6 0.0900 -6.0274 2.7299 10 6 0.9142 -6.9661 2.1209 11 6 2.1511 -6.5589 1.5885 12 6 2.7686 -7.7650 1.0273 13 6 1.9179 -8.7810 1.2459 14 7 0.8005 -8.3236 1.8931 15 6 -0.2689 -9.0989 2.2646 16 1 -1.2288 -8.6408 2.4519 17 6 -0.1182 -10.4732 2.3941 18 7 1.0825 -11.0074 2.3748 19 14 -1.6221 -11.5626 2.5961 20 1 -2.8468 -10.7228 2.5855 21 1 -1.6811 -12.5372 1.4772 22 1 -1.5340 -12.2940 3.8855 23 6 2.5397 -5.2216 1.6731 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2952 33 1 1.9882 -2.5691 0.3435 34 1 1.6903 -2.4174 3.2721 35 1 3.2117 -2.8001 2.4310 36 1 -0.1550 -3.9834 3.2818 37 1 -0.8614 -6.3298 3.1421 38 1 3.7284 -7.8257 0.5356 39 1 2.0881 -9.8064 0.9520 40 1 1.1878 -11.9674 2.4656 41 1 3.4879 -4.9050 1.2645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229727161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:45 Heat of formation + Delta-G solvation = 38.330638 kcal Electronic energy + Delta-G solvation = -19937.376166 eV Core-core repulsion = 17009.594680 eV Total energy + Delta-G solvation = -2927.781487 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98486 -37.65299 -36.27225 -33.79130 -32.92848 -30.91038 -29.28859 -27.87344 -27.16797 -25.86902 -24.60965 -23.03841 -21.40921 -20.41386 -19.92907 -19.40760 -17.58360 -15.70862 -15.63384 -15.41170 -14.75919 -14.72740 -14.52624 -14.19211 -13.61604 -13.32647 -13.08135 -12.88916 -12.56963 -12.32457 -12.13480 -12.04891 -11.73904 -11.72971 -11.41227 -11.31040 -11.04811 -10.90896 -10.82505 -10.71929 -10.57597 -10.35300 -10.24297 -9.78350 -9.20619 -8.55667 -8.21222 -7.02278 -6.86209 -6.55042 -4.28474 2.20894 2.60495 2.99850 3.03663 3.09135 3.81422 4.07945 4.36334 4.76369 4.80753 4.87607 4.89236 5.07908 5.18362 5.40183 5.48980 5.52655 5.59352 5.62548 5.71312 5.81875 5.88654 5.93590 5.95140 6.03494 6.07391 6.26002 6.39808 6.42064 6.47414 6.54330 6.92769 7.07560 7.11365 7.15076 7.17653 7.24359 7.51598 7.54050 7.62931 7.69220 8.03566 8.20106 8.47884 9.02126 9.45168 10.29188 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.035790 B = 0.003372 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.146091 B = 8302.328168 C = 8677.960083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.062 3.938 5 N -0.683 5.683 6 C 0.116 3.884 7 C -0.139 4.139 8 C -0.113 4.113 9 C -0.111 4.111 10 C 0.056 3.944 11 C -0.118 4.118 12 C -0.285 4.285 13 C 0.086 3.914 14 N -0.293 5.293 15 C -0.339 4.339 16 H 0.105 0.895 17 C 0.041 3.959 18 N -0.854 5.854 19 Si 0.939 3.061 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.074 4.074 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.341 0.659 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.170 0.830 40 H 0.278 0.722 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 14.451 -2.559 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.067 4.067 5 N -0.314 5.314 6 C -0.012 4.012 7 C -0.141 4.141 8 C -0.133 4.133 9 C -0.131 4.131 10 C -0.055 4.055 11 C -0.124 4.124 12 C -0.310 4.310 13 C -0.049 4.049 14 N 0.044 4.956 15 C -0.466 4.466 16 H 0.123 0.877 17 C -0.167 4.167 18 N -0.486 5.486 19 Si 0.764 3.236 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.093 4.093 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.159 0.841 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.187 0.813 40 H 0.089 0.911 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.208 14.104 -2.172 14.272 hybrid contribution 0.403 -0.786 0.007 0.884 sum 0.611 13.318 -2.166 13.507 Atomic orbital electron populations 1.21730 0.94486 1.02867 1.00524 1.21112 0.96919 0.95421 0.97960 1.21819 1.00673 0.96201 1.01718 1.22029 0.96987 0.89485 0.98247 1.60534 1.64307 1.01375 1.05213 1.20647 0.96290 0.91222 0.93049 1.19005 0.96472 0.93251 1.05413 1.20225 0.96173 0.94149 1.02787 1.19858 0.98949 0.91959 1.02311 1.18394 0.96821 0.85663 1.04654 1.18977 0.95278 0.93254 1.04907 1.21275 1.01995 0.91533 1.16149 1.22093 0.87054 0.99283 0.96449 1.40254 1.14121 1.03836 1.37370 1.19877 0.89883 0.89166 1.47695 0.87693 1.25494 0.98516 0.97686 0.95011 1.69901 1.21491 1.13371 1.43885 0.85669 0.80183 0.79404 0.78368 1.18793 1.19915 1.20090 1.20068 0.98100 0.91453 0.99702 0.91147 0.93226 0.93709 0.91459 0.92983 0.92685 0.92722 0.91316 0.95821 0.84095 0.91239 0.95542 0.87562 0.87682 0.85982 0.81301 0.91122 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.08 37.16 0.34 -1.07 16 2 C -0.10 -0.92 3.06 -90.62 -0.28 -1.20 16 3 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 4 C 0.06 0.67 5.07 -3.82 -0.02 0.65 16 5 N -0.68 -9.08 5.94 -115.06 -0.68 -9.76 16 6 C 0.12 1.69 5.80 -4.98 -0.03 1.67 16 7 C -0.14 -2.56 5.39 -104.60 -0.56 -3.12 16 8 C -0.11 -2.19 9.67 -39.52 -0.38 -2.57 16 9 C -0.11 -2.46 9.95 -39.44 -0.39 -2.85 16 10 C 0.06 1.41 6.75 -83.84 -0.57 0.85 16 11 C -0.12 -2.80 6.37 -105.10 -0.67 -3.47 16 12 C -0.29 -6.77 11.09 -37.57 -0.42 -7.18 16 13 C 0.09 2.20 9.89 -16.63 -0.16 2.04 16 14 N -0.29 -7.83 2.92 -59.73 -0.17 -8.00 16 15 C -0.34 -8.95 9.93 -14.92 -0.15 -9.10 16 16 H 0.11 2.66 7.85 -52.49 -0.41 2.25 16 17 C 0.04 1.02 5.35 -17.49 -0.09 0.93 16 18 N -0.85 -22.19 10.84 55.49 0.60 -21.59 16 19 Si 0.94 19.13 29.56 -169.99 -5.03 14.11 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 23 C -0.07 -1.49 9.74 -39.27 -0.38 -1.87 16 24 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.34 4.58 8.72 -39.30 -0.34 4.24 16 34 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 36 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.11 2.22 8.06 -52.48 -0.42 1.79 16 38 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 39 H 0.17 4.35 6.33 -52.48 -0.33 4.02 16 40 H 0.28 6.65 8.31 -40.82 -0.34 6.32 16 41 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 339.42 15.07 5.12 5.12 Total: -1.00 -27.44 339.42 -10.13 -37.57 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -6.54 Total: 9.70 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -3.43 Total: -27.14 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.26 Total: -39.35 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.44 -10.13 -37.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229727161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.900 kcal (2) G-P(sol) polarization free energy of solvation -27.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds