Wall clock time and date at job start Mon Mar 30 2020 07:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46988 * 2 1 4 4 H 1.08998 * 109.47225 * 54.21040 * 3 2 1 5 5 C 1.50701 * 109.46837 * 174.21227 * 3 2 1 6 6 H 1.08003 * 120.00022 * 120.00060 * 5 3 2 7 7 C 1.37871 * 120.00306 * 299.99399 * 5 3 2 8 8 N 1.31520 * 119.99722 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00493 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47158 * 90.00258 * 9 7 5 11 11 H 1.48496 * 109.47568 * 210.00014 * 9 7 5 12 12 H 1.48500 * 109.46896 * 330.00438 * 9 7 5 13 13 N 1.46900 * 109.47042 * 294.20800 * 3 2 1 14 14 C 1.39828 * 111.00375 * 158.54412 * 13 3 2 15 15 C 1.38953 * 120.08050 * 283.12149 * 14 13 3 16 16 Cl 1.73596 * 120.04424 * 359.97438 * 15 14 13 17 17 C 1.38231 * 119.91696 * 179.78345 * 15 14 13 18 18 C 1.38279 * 120.07835 * 0.48875 * 17 15 14 19 19 C 1.38281 * 120.16401 * 359.74304 * 18 17 15 20 20 C 1.38226 * 120.08030 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 120.03976 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.46919 * 186.36225 * 1 2 3 23 23 H 1.08996 * 109.47008 * 306.36402 * 1 2 3 24 24 H 1.09000 * 109.46860 * 66.36002 * 1 2 3 25 25 H 1.08998 * 109.47353 * 240.00165 * 2 1 3 26 26 H 1.09000 * 109.47032 * 119.99836 * 2 1 3 27 27 H 0.97003 * 119.99798 * 179.97438 * 8 7 5 28 28 H 1.00907 * 111.00040 * 34.59543 * 13 3 2 29 29 H 1.07999 * 119.95696 * 180.22747 * 17 15 14 30 30 H 1.08005 * 119.91858 * 179.76427 * 18 17 15 31 31 H 1.08000 * 119.95905 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5945 1.9854 0.8336 5 6 3.5402 1.4449 0.1433 6 1 4.1555 1.8860 -0.6270 7 6 4.1272 0.8842 1.2577 8 7 3.3779 0.3468 2.1955 9 14 5.9867 0.8878 1.4357 10 1 6.4143 2.1240 2.1387 11 1 6.4112 -0.2996 2.2199 12 1 6.6128 0.8420 0.0899 13 7 1.6678 2.0935 -1.2632 14 6 1.6685 3.4853 -1.1290 15 6 0.6161 4.1234 -0.4840 16 17 -0.7027 3.1937 0.1562 17 6 0.6225 5.4991 -0.3494 18 6 1.6695 6.2410 -0.8644 19 6 2.7162 5.6099 -1.5112 20 6 2.7190 4.2342 -1.6454 21 17 4.0339 3.4429 -2.4569 22 1 -0.3633 -1.0213 0.1139 23 1 -0.3633 0.6093 0.8275 24 1 -0.3633 0.4121 -0.9414 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7909 -0.0480 2.9794 28 1 0.7726 1.7624 -1.5906 29 1 -0.1934 5.9954 0.1551 30 1 1.6700 7.3161 -0.7611 31 1 3.5325 6.1926 -1.9118 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083848421.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:28 Heat of formation + Delta-G solvation = 9.656108 kcal Electronic energy + Delta-G solvation = -17174.395774 eV Core-core repulsion = 14314.262330 eV Total energy + Delta-G solvation = -2860.133444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 273.038 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.32499 -36.30283 -36.04219 -35.63263 -32.70020 -31.30637 -30.25643 -28.23425 -26.27510 -23.05443 -22.38104 -21.45634 -19.63881 -17.19555 -16.44440 -15.73842 -15.40850 -14.82396 -14.25486 -13.93202 -13.85122 -13.23594 -12.71141 -12.51963 -11.98551 -11.78782 -11.76270 -11.49390 -11.18924 -10.84498 -10.79248 -10.73380 -10.59423 -10.27273 -9.92616 -9.70065 -9.64470 -9.03673 -8.36448 -8.34359 -8.19729 -7.49698 -5.93492 -3.95846 1.34309 1.49267 2.34031 2.86997 3.34822 3.41345 3.46345 3.79620 4.47426 4.85568 5.03633 5.28919 5.37360 5.43318 5.72783 5.85371 6.18602 6.19017 6.26910 6.40307 6.43797 6.48464 6.80942 6.88535 7.09139 7.14576 7.47286 7.74343 7.94562 8.23248 8.32502 8.62645 9.14107 9.68476 11.12766 Molecular weight = 273.04amu Principal moments of inertia in cm(-1) A = 0.015200 B = 0.009906 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.641475 B = 2825.950791 C = 3863.010406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.227 3.773 4 H 0.015 0.985 5 C -0.500 4.500 6 H 0.078 0.922 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.646 5.646 14 C 0.157 3.843 15 C -0.072 4.072 16 Cl -0.061 7.061 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.109 4.109 20 C -0.005 4.005 21 Cl -0.041 7.041 22 H 0.036 0.964 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.258 0.742 28 H 0.336 0.664 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 8.929 -5.988 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.123 3.877 4 H 0.033 0.967 5 C -0.539 4.539 6 H 0.096 0.904 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.277 5.277 14 C 0.058 3.942 15 C -0.101 4.101 16 Cl -0.033 7.033 17 C -0.125 4.125 18 C -0.140 4.140 19 C -0.128 4.128 20 C -0.033 4.033 21 Cl -0.012 7.012 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.121 0.879 27 H 0.068 0.932 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.781 8.571 -6.078 11.544 hybrid contribution 0.169 -0.076 0.809 0.830 sum -4.612 8.496 -5.269 11.009 Atomic orbital electron populations 1.21922 0.99500 0.99631 0.99666 1.21752 0.91323 0.99757 1.03295 1.19338 0.96115 0.89987 0.82290 0.96703 1.21514 0.91088 1.36512 1.04768 0.90351 1.24908 0.97808 0.95695 0.95898 1.69880 1.34549 1.39698 1.09565 0.86623 0.86200 0.77310 0.78113 1.20907 1.21437 1.19807 1.58414 1.34894 0.99272 1.35123 1.18463 0.90723 0.91955 0.93042 1.21774 0.93227 0.92744 1.02397 1.98357 1.46323 1.73407 1.85163 1.20946 0.99504 0.91652 1.00355 1.20846 0.93764 0.99745 0.99628 1.21043 0.99336 0.92391 1.00028 1.20715 0.91230 0.91594 0.99786 1.98352 1.45344 1.80885 1.76584 0.94490 0.93610 0.94698 0.93902 0.87908 0.93187 0.84115 0.85282 0.84984 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.96 37.16 0.33 -2.56 16 2 C -0.12 -2.85 5.39 -26.73 -0.14 -3.00 16 3 C 0.23 5.49 1.58 -68.86 -0.11 5.38 16 4 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 5 C -0.50 -13.47 8.58 -34.44 -0.30 -13.76 16 6 H 0.08 2.09 5.29 -52.48 -0.28 1.81 16 7 C 0.06 1.57 5.29 -17.82 -0.09 1.48 16 8 N -0.90 -25.39 11.29 55.43 0.63 -24.77 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.65 -13.59 5.41 -52.96 -0.29 -13.88 16 14 C 0.16 3.07 5.05 -83.68 -0.42 2.65 16 15 C -0.07 -1.26 6.03 -39.32 -0.24 -1.49 16 16 Cl -0.06 -1.03 25.09 -51.86 -1.30 -2.33 16 17 C -0.11 -1.53 9.82 -39.57 -0.39 -1.92 16 18 C -0.12 -1.60 10.04 -39.55 -0.40 -2.00 16 19 C -0.11 -1.61 9.82 -39.57 -0.39 -2.00 16 20 C 0.00 -0.09 6.34 -39.32 -0.25 -0.34 16 21 Cl -0.04 -0.77 26.13 -51.86 -1.35 -2.12 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.90 7.15 -51.93 -0.37 0.53 16 24 H 0.03 0.61 6.69 -51.93 -0.35 0.26 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 2.70 5.94 -51.93 -0.31 2.39 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.34 6.57 5.97 -39.29 -0.23 6.34 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -28.34 282.24 -8.62 -36.95 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.14 Total: 2.77 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.39 Total: -17.56 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.34 Total: -38.65 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -2.66 Total: -4.46 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.34 -8.62 -36.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083848421.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.608 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds