Wall clock time and date at job start Mon Mar 30 2020 07:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86795 * 120.00126 * 2 1 4 4 H 1.48507 * 109.47052 * 274.64964 * 3 2 1 5 5 H 1.48502 * 109.47365 * 34.64712 * 3 2 1 6 6 H 1.48503 * 109.47314 * 154.65017 * 3 2 1 7 7 C 1.39874 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99758 * 162.15157 * 7 2 1 9 9 C 1.41172 * 120.00149 * 342.15739 * 7 2 1 10 10 C 1.40856 * 120.17486 * 155.12268 * 9 7 2 11 11 C 1.36405 * 119.81553 * 180.02562 * 10 9 7 12 12 C 1.39382 * 120.17887 * 0.02562 * 11 10 9 13 13 O 1.35606 * 119.82037 * 179.97438 * 12 11 10 14 14 C 1.35984 * 117.99993 * 180.02562 * 13 12 11 15 15 C 1.39346 * 120.09395 * 89.99616 * 14 13 12 16 16 N 1.39891 * 120.08501 * 0.25287 * 15 14 13 17 17 C 1.38747 * 119.83564 * 179.97438 * 15 14 13 18 18 C 1.38237 * 120.02523 * 0.02562 * 17 15 14 19 19 C 1.38255 * 120.19079 * 359.97438 * 18 17 15 20 20 C 1.38460 * 120.16312 * 0.02562 * 19 18 17 21 21 F 1.35105 * 120.01367 * 180.02562 * 20 19 18 22 22 C 1.39372 * 120.35544 * 0.25284 * 12 11 10 23 23 C 1.36401 * 120.17788 * 359.44402 * 22 12 11 24 24 H 0.97000 * 119.99937 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.09087 * 359.97438 * 10 9 7 26 26 H 1.07999 * 119.90566 * 179.97438 * 11 10 9 27 27 H 0.96994 * 120.00325 * 179.71849 * 16 15 14 28 28 H 0.97000 * 119.99951 * 359.73002 * 16 15 14 29 29 H 1.07997 * 119.99323 * 180.02562 * 17 15 14 30 30 H 1.08005 * 119.90835 * 180.02562 * 18 17 15 31 31 H 1.07999 * 119.91831 * 180.02562 * 19 18 17 32 32 H 1.08000 * 119.91185 * 179.72657 * 22 12 11 33 33 H 1.08009 * 120.08751 * 180.27578 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3922 2.1031 -1.3955 5 1 1.4930 2.6223 0.7960 6 1 3.5862 1.4137 0.5994 7 6 2.0083 -1.2114 0.0005 8 1 3.0493 -1.2340 -0.2861 9 6 1.3533 -2.4044 0.3757 10 6 1.8226 -3.6471 -0.0928 11 6 1.1839 -4.7952 0.2739 12 6 0.0694 -4.7409 1.1092 13 8 -0.5603 -5.8868 1.4687 14 6 -1.6440 -5.7908 2.2845 15 6 -2.9186 -5.6494 1.7394 16 7 -3.0873 -5.6113 0.3512 17 6 -4.0207 -5.5525 2.5767 18 6 -3.8532 -5.5955 3.9482 19 6 -2.5891 -5.7358 4.4903 20 6 -1.4839 -5.8332 3.6620 21 9 -0.2500 -5.9707 4.1949 22 6 -0.4046 -3.5148 1.5723 23 6 0.2267 -2.3582 1.2198 24 1 -0.4850 0.8401 -0.0004 25 1 2.6853 -3.6907 -0.7411 26 1 1.5422 -5.7488 -0.0848 27 1 -3.9754 -5.5169 -0.0270 28 1 -2.3160 -5.6793 -0.2331 29 1 -5.0097 -5.4433 2.1569 30 1 -4.7124 -5.5203 4.5983 31 1 -2.4634 -5.7693 5.5624 32 1 -1.2714 -3.4808 2.2157 33 1 -0.1393 -1.4092 1.5831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302700621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:37 Heat of formation + Delta-G solvation = -31.259438 kcal Electronic energy + Delta-G solvation = -20226.016990 eV Core-core repulsion = 16938.205790 eV Total energy + Delta-G solvation = -3287.811201 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.51795 -40.01887 -37.97269 -36.41013 -34.19267 -33.41869 -30.04464 -29.62064 -29.01031 -28.23259 -25.04440 -22.71872 -22.24523 -21.16314 -20.56078 -17.88946 -17.43631 -17.34322 -17.18035 -15.96837 -15.17252 -15.15533 -14.94242 -14.90187 -14.38245 -13.97306 -13.51077 -13.02846 -12.83574 -12.58745 -12.47331 -12.07465 -11.82828 -11.62780 -11.46725 -11.15498 -11.01970 -10.68222 -10.44589 -10.10524 -9.85259 -9.47667 -9.07115 -8.38126 -7.67334 -7.43294 -7.08626 -6.76879 -4.29733 1.28114 1.56329 2.72685 2.95484 3.06510 3.10321 3.18236 3.63801 3.87760 3.92573 4.25246 4.57610 4.64443 4.95494 5.23169 5.40542 5.61389 5.64685 6.03183 6.11429 6.14918 6.24076 6.26713 6.48394 6.67618 6.87513 6.93588 7.03561 7.23991 7.38372 7.51662 7.56977 7.88631 7.89440 7.97952 8.13995 8.46596 8.64863 8.86388 8.96301 10.17607 Molecular weight = 273.09amu Principal moments of inertia in cm(-1) A = 0.024142 B = 0.005031 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.520948 B = 5563.943879 C = 5737.745713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.093 3.907 10 C -0.201 4.201 11 C -0.104 4.104 12 C -0.028 4.028 13 O -0.261 6.261 14 C -0.004 4.004 15 C 0.237 3.763 16 N -0.859 5.859 17 C -0.208 4.208 18 C -0.051 4.051 19 C -0.212 4.212 20 C 0.134 3.866 21 F -0.129 7.129 22 C -0.154 4.154 23 C -0.135 4.135 24 H 0.280 0.720 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.399 0.601 28 H 0.408 0.592 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.196 -6.926 3.985 11.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.491 4.491 8 H 0.096 0.904 9 C 0.091 3.909 10 C -0.221 4.221 11 C -0.123 4.123 12 C -0.069 4.069 13 O -0.174 6.174 14 C -0.053 4.053 15 C 0.129 3.871 16 N -0.397 5.397 17 C -0.231 4.231 18 C -0.070 4.070 19 C -0.233 4.233 20 C 0.113 3.887 21 F -0.108 7.108 22 C -0.173 4.173 23 C -0.155 4.155 24 H 0.090 0.910 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.227 0.773 28 H 0.238 0.762 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.110 0.890 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.259 -6.938 3.922 11.477 hybrid contribution 0.363 1.021 -0.231 1.108 sum -7.896 -5.917 3.691 10.535 Atomic orbital electron populations 1.69848 1.07559 1.29128 1.35766 1.25893 0.94719 1.01301 0.92282 0.86326 0.80800 0.80751 0.79013 1.19605 1.20078 1.18413 1.19480 0.98124 0.91229 1.40257 0.90401 1.17615 0.91628 0.92203 0.89503 1.20568 1.03398 0.92171 1.05927 1.19575 0.95080 0.97740 0.99884 1.18824 0.98274 0.83386 1.06397 1.84225 1.39632 1.30656 1.62909 1.17980 0.86423 1.12936 0.87982 1.17871 0.92193 0.91816 0.85262 1.42423 1.11903 1.82291 1.03042 1.20503 0.97124 1.12238 0.93267 1.20657 0.96264 0.95797 0.94239 1.20772 0.91535 1.11100 0.99857 1.17865 0.80325 1.00020 0.90467 1.91498 1.40381 1.92637 1.86257 1.20568 1.00793 0.92727 1.03164 1.20924 0.98509 0.96468 0.99579 0.90958 0.88094 0.88435 0.77281 0.76216 0.85449 0.85147 0.84989 0.89026 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.58 10.97 55.54 0.61 -19.97 16 2 C 0.08 1.88 5.13 -17.34 -0.09 1.80 16 3 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.23 9.03 -37.86 -0.34 -12.57 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.09 2.49 5.57 -106.80 -0.59 1.89 16 10 C -0.20 -4.95 9.74 -39.25 -0.38 -5.33 16 11 C -0.10 -2.42 9.92 -39.82 -0.40 -2.81 16 12 C -0.03 -0.65 6.69 -38.73 -0.26 -0.91 16 13 O -0.26 -5.55 9.07 -2.97 -0.03 -5.58 16 14 C 0.00 -0.08 3.96 -38.98 -0.15 -0.23 16 15 C 0.24 3.72 6.66 -83.58 -0.56 3.17 16 16 N -0.86 -11.89 9.09 32.51 0.30 -11.60 16 17 C -0.21 -2.68 9.89 -39.39 -0.39 -3.07 16 18 C -0.05 -0.61 10.04 -39.58 -0.40 -1.01 16 19 C -0.21 -2.99 10.02 -39.49 -0.40 -3.38 16 20 C 0.13 2.39 7.21 -39.31 -0.28 2.10 16 21 F -0.13 -2.52 17.11 2.25 0.04 -2.48 16 22 C -0.15 -3.74 9.13 -39.82 -0.36 -4.10 16 23 C -0.14 -3.57 8.64 -39.25 -0.34 -3.91 16 24 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 25 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 27 H 0.40 4.16 8.84 -40.82 -0.36 3.80 16 28 H 0.41 6.20 8.18 -40.82 -0.33 5.86 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.09 2.14 6.64 -52.49 -0.35 1.79 16 33 H 0.12 3.27 6.18 -52.48 -0.32 2.95 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -29.08 295.14 -7.64 -36.72 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -3.03 Total: 13.21 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -4.94 Total: -28.38 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.90 Total: -31.56 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.03 Total: -5.58 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.08 -7.64 -36.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302700621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.461 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds