Wall clock time and date at job start Mon Mar 30 2020 07:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 112.84814 * 2 1 4 4 O 1.21290 * 119.99942 * 244.18321 * 3 2 1 5 5 N 1.34777 * 120.00629 * 64.18772 * 3 2 1 6 6 C 1.46504 * 119.99439 * 2.96651 * 5 3 2 7 7 C 1.50707 * 109.46812 * 264.90602 * 6 5 3 8 8 H 1.07995 * 120.00563 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99405 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00057 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99588 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46764 * 89.99908 * 11 9 7 13 13 H 1.48500 * 109.46861 * 209.99527 * 11 9 7 14 14 H 1.48497 * 109.47325 * 329.99983 * 11 9 7 15 15 C 1.39926 * 120.00560 * 182.97071 * 5 3 2 16 16 C 1.38864 * 120.07040 * 172.00779 * 15 5 3 17 17 C 1.38113 * 119.92905 * 180.02562 * 16 15 5 18 18 C 1.38278 * 120.07139 * 0.02562 * 17 16 15 19 19 C 1.38288 * 120.14163 * 0.25080 * 18 17 16 20 20 C 1.38115 * 120.06563 * 359.49122 * 19 18 17 21 21 C 1.53774 * 113.61402 * 131.19447 * 2 1 3 22 22 C 1.53956 * 87.01773 * 89.22844 * 21 2 1 23 23 C 1.53775 * 87.11231 * 25.36269 * 22 21 2 24 24 H 1.09003 * 109.47292 * 49.69823 * 1 2 3 25 25 H 1.09001 * 109.47323 * 169.70185 * 1 2 3 26 26 H 1.09003 * 109.46640 * 289.70223 * 1 2 3 27 27 H 1.09001 * 109.47449 * 24.90379 * 6 5 3 28 28 H 1.08994 * 109.46919 * 144.90970 * 6 5 3 29 29 H 0.97004 * 119.99765 * 180.02562 * 10 9 7 30 30 H 1.08000 * 120.03720 * 0.02562 * 16 15 5 31 31 H 1.07997 * 119.96512 * 180.02562 * 17 16 15 32 32 H 1.08003 * 119.93423 * 179.97438 * 18 17 16 33 33 H 1.07992 * 119.96656 * 179.74574 * 19 18 17 34 34 H 1.08003 * 120.03648 * 180.25308 * 20 19 18 35 35 H 1.08994 * 113.61755 * 203.74364 * 21 2 1 36 36 H 1.09000 * 113.61943 * 334.65638 * 21 2 1 37 37 H 1.08999 * 113.54101 * 270.80747 * 22 21 2 38 38 H 1.09003 * 113.74582 * 139.94647 * 22 21 2 39 39 H 1.09011 * 113.61597 * 220.09094 * 23 22 21 40 40 H 1.09004 * 113.61678 * 89.18719 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.7722 1.7699 -0.9456 5 7 1.9086 2.2072 1.0507 6 6 1.1704 1.7249 2.2207 7 6 -0.2801 2.1138 2.0948 8 1 -0.6183 2.6653 1.2300 9 6 -1.1753 1.7662 3.0842 10 7 -0.7634 1.0950 4.1375 11 14 -2.9732 2.2489 2.9285 12 1 -3.7154 1.1727 2.2239 13 1 -3.5521 2.4449 4.2819 14 1 -3.0815 3.5124 2.1560 15 6 2.3989 3.5174 1.0241 16 6 2.0482 4.4121 2.0265 17 6 2.5334 5.7049 1.9970 18 6 3.3673 6.1087 0.9705 19 6 3.7139 5.2218 -0.0323 20 6 3.2362 3.9262 -0.0057 21 6 2.1460 -0.9280 1.0602 22 6 2.0950 -2.0419 -0.0013 23 6 2.1460 -0.9281 -1.0602 24 1 -0.3634 0.6647 -0.7838 25 1 -0.3634 -1.0111 -0.1837 26 1 -0.3633 0.3465 0.9676 27 1 1.2518 0.6395 2.2797 28 1 1.5889 2.1703 3.1232 29 1 -1.3933 0.8502 4.8334 30 1 1.3966 4.0974 2.8282 31 1 2.2614 6.4010 2.7765 32 1 3.7451 7.1203 0.9495 33 1 4.3620 5.5415 -0.8348 34 1 3.5105 3.2327 -0.7870 35 1 3.1585 -0.6477 1.3506 36 1 1.4940 -1.1080 1.9149 37 1 1.1595 -2.6013 -0.0006 38 1 2.9737 -2.6869 -0.0033 39 1 1.4938 -1.1080 -1.9150 40 1 3.1585 -0.6477 -1.3507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720708564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:55 Heat of formation + Delta-G solvation = 11.709716 kcal Electronic energy + Delta-G solvation = -21882.115467 eV Core-core repulsion = 18855.460948 eV Total energy + Delta-G solvation = -3026.654519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19600 -40.03456 -38.41330 -36.96961 -34.63292 -31.77046 -31.44806 -29.86122 -29.21732 -26.68985 -25.76853 -25.18887 -23.59885 -22.89748 -21.10669 -19.29196 -18.70807 -18.22184 -17.91187 -17.12682 -16.50658 -16.36310 -15.83314 -15.66227 -15.13785 -14.80728 -14.45671 -14.29169 -14.24058 -13.72942 -13.46547 -13.27834 -13.19753 -13.11362 -12.87975 -12.68298 -12.50400 -12.20034 -12.10488 -12.00150 -11.95249 -11.68205 -11.30883 -11.06915 -10.85443 -10.59163 -10.02409 -9.76277 -8.76303 -8.20218 -6.31123 0.42990 0.58215 1.39217 1.42935 1.50631 1.69483 2.13974 2.40308 3.04944 3.08296 3.46094 3.61534 3.72452 3.91607 4.00789 4.18071 4.22984 4.43474 4.61275 4.63380 4.66965 4.70568 4.75062 4.81244 4.90908 4.97344 5.02517 5.08015 5.12538 5.18741 5.28128 5.28911 5.47572 5.50849 5.62286 5.66392 5.70429 5.74703 5.84441 6.00510 6.33576 6.49140 6.76384 7.17933 7.34988 8.83644 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.009854 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.097117 B = 2840.930764 C = 4710.274504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.520 3.480 4 O -0.562 6.562 5 N -0.539 5.539 6 C 0.235 3.765 7 C -0.526 4.526 8 H 0.045 0.955 9 C 0.033 3.967 10 N -0.911 5.911 11 Si 0.945 3.055 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.278 1.278 15 C 0.135 3.865 16 C -0.165 4.165 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.106 4.106 20 C -0.200 4.200 21 C -0.127 4.127 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.016 0.984 29 H 0.269 0.731 30 H 0.116 0.884 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.164 0.836 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -0.564 -5.194 7.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 C 0.313 3.687 4 O -0.444 6.444 5 N -0.257 5.257 6 C 0.116 3.884 7 C -0.564 4.564 8 H 0.064 0.936 9 C -0.168 4.168 10 N -0.549 5.549 11 Si 0.771 3.229 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.203 1.203 15 C 0.040 3.960 16 C -0.186 4.186 17 C -0.122 4.122 18 C -0.169 4.169 19 C -0.124 4.124 20 C -0.219 4.219 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.148 4.148 24 H 0.058 0.942 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.274 -0.550 -5.470 7.619 hybrid contribution -1.179 0.482 0.422 1.342 sum 4.095 -0.067 -5.048 6.501 Atomic orbital electron populations 1.21947 0.90585 1.02251 1.04932 1.22127 0.97879 0.89007 1.01370 1.21291 0.78897 0.88042 0.80501 1.90219 1.41786 1.75930 1.36462 1.46035 1.50543 1.09953 1.19136 1.19634 0.90317 0.97042 0.81434 1.21265 0.93205 1.36193 1.05735 0.93623 1.25432 1.02071 0.94780 0.94537 1.69982 1.36487 1.38797 1.09667 0.85746 0.80877 0.78799 0.77498 1.19404 1.20644 1.20334 1.18475 0.95757 0.85082 0.96673 1.21138 1.03043 0.94641 0.99753 1.21225 0.97073 0.94524 0.99372 1.21409 0.99862 1.00866 0.94813 1.21399 0.99369 0.92512 0.99168 1.22712 0.99493 0.99345 1.00390 1.23032 1.00270 0.96116 0.97037 1.22800 1.03712 0.95343 0.93699 1.22860 1.01044 0.94411 0.96479 0.94218 0.90256 0.88867 0.91776 0.96549 0.92147 0.86562 0.83827 0.83050 0.83732 0.81962 0.90876 0.90772 0.88516 0.89242 0.90093 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 8.42 71.98 0.61 -4.55 16 2 C -0.10 -3.62 0.70 -52.40 -0.04 -3.66 16 3 C 0.52 22.32 6.64 87.66 0.58 22.90 16 4 O -0.56 -25.15 12.53 -3.06 -0.04 -25.19 16 5 N -0.54 -24.40 2.69 -635.30 -1.71 -26.11 16 6 C 0.24 11.23 3.97 85.63 0.34 11.57 16 7 C -0.53 -26.48 5.86 25.60 0.15 -26.33 16 8 H 0.05 2.43 7.81 -2.91 -0.02 2.41 16 9 C 0.03 1.67 5.41 84.66 0.46 2.13 16 10 N -0.91 -47.70 13.29 21.45 0.28 -47.42 16 11 Si 0.94 40.77 29.54 68.60 2.03 42.79 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 15 C 0.14 5.97 6.47 38.15 0.25 6.22 16 16 C -0.17 -6.87 9.02 22.39 0.20 -6.67 16 17 C -0.10 -3.44 10.04 22.25 0.22 -3.22 16 18 C -0.15 -4.43 10.04 22.29 0.22 -4.21 16 19 C -0.11 -3.43 10.04 22.25 0.22 -3.21 16 20 C -0.20 -8.07 9.03 22.39 0.20 -7.87 16 21 C -0.13 -4.09 5.65 31.18 0.18 -3.91 16 22 C -0.12 -2.92 7.74 31.18 0.24 -2.68 16 23 C -0.11 -3.21 6.88 31.12 0.21 -2.99 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 2.41 7.34 -2.39 -0.02 2.40 16 26 H 0.09 4.03 4.13 -2.39 -0.01 4.02 16 27 H 0.06 3.02 3.87 -2.39 -0.01 3.01 16 28 H 0.02 0.85 6.88 -2.39 -0.02 0.84 16 29 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 30 H 0.12 5.29 6.15 -2.91 -0.02 5.27 16 31 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 32 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 33 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.16 6.99 4.58 -58.83 -0.27 6.72 16 35 H 0.07 2.38 8.09 -2.39 -0.02 2.37 16 36 H 0.07 2.58 7.03 -2.39 -0.02 2.56 16 37 H 0.10 2.14 7.65 -2.39 -0.02 2.12 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 2.14 8.10 -2.38 -0.02 2.12 16 40 H 0.08 2.41 7.69 -2.38 -0.02 2.39 16 Total: -1.00 -58.10 313.35 5.40 -52.69 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.79 Total: 29.72 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 4.05 Total: -26.49 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.42 Total: -73.53 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.04 Total: -25.19 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Total: -58.10 5.40 -52.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720708564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.404 kcal (2) G-P(sol) polarization free energy of solvation -58.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds