Wall clock time and date at job start Mon Mar 30 2020 07:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86793 * 119.99704 * 2 1 4 4 H 1.48504 * 109.47404 * 240.00293 * 3 2 1 5 5 H 1.48496 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46892 * 120.00375 * 3 2 1 7 7 C 1.38650 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99954 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.35758 * 116.99668 * 185.05715 * 9 7 2 11 11 C 1.38894 * 120.07030 * 354.49227 * 10 9 7 12 12 C 1.38080 * 119.92959 * 179.97438 * 11 10 9 13 13 C 1.38320 * 120.07069 * 359.74443 * 12 11 10 14 14 C 1.38284 * 120.13552 * 0.50730 * 13 12 11 15 15 C 1.50695 * 119.96524 * 179.76324 * 14 13 12 16 16 N 1.46904 * 109.47640 * 269.72644 * 15 14 13 17 17 C 1.46900 * 111.00069 * 179.97438 * 16 15 14 18 18 H 1.08998 * 115.55996 * 350.66604 * 17 16 15 19 19 C 1.53125 * 117.50761 * 136.39487 * 17 16 15 20 20 C 1.52454 * 59.85639 * 107.45061 * 19 17 16 21 21 C 1.53255 * 128.58688 * 117.59983 * 20 19 17 22 22 C 1.53890 * 86.88473 * 114.94445 * 21 20 19 23 23 C 1.53259 * 128.58392 * 242.39754 * 20 19 17 24 24 C 1.38118 * 120.06799 * 359.49740 * 14 13 12 25 25 H 0.96995 * 120.00352 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.03472 * 359.97438 * 11 10 9 27 27 H 1.08005 * 119.96293 * 179.97438 * 12 11 10 28 28 H 1.07999 * 119.93484 * 180.27902 * 13 12 11 29 29 H 1.09005 * 109.47252 * 149.72419 * 15 14 13 30 30 H 1.09000 * 109.47088 * 29.72669 * 15 14 13 31 31 H 1.00905 * 110.99319 * 56.05002 * 16 15 14 32 32 H 1.09004 * 117.51146 * 214.89731 * 19 17 16 33 33 H 1.09003 * 117.51614 * 359.95800 * 19 17 16 34 34 H 1.08999 * 113.65009 * 229.43877 * 21 20 19 35 35 H 1.08995 * 113.64611 * 0.44791 * 21 20 19 36 36 H 1.09006 * 113.58591 * 270.39508 * 22 21 20 37 37 H 1.08997 * 113.66271 * 139.58634 * 22 21 20 38 38 H 1.09000 * 113.64177 * 359.55694 * 23 20 19 39 39 H 1.08999 * 113.64845 * 130.46581 * 23 20 19 40 40 H 1.08000 * 120.03688 * 180.23204 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1056 11 6 3.4575 -3.4394 0.0926 12 6 4.2026 -4.5968 0.2013 13 6 3.5689 -5.8197 0.3282 14 6 2.1878 -5.8885 0.3361 15 6 1.5014 -7.2234 0.4692 16 7 1.2713 -7.7911 -0.8660 17 6 0.6027 -9.0960 -0.7752 18 1 0.5240 -9.5153 0.2278 19 6 -0.5464 -9.3712 -1.7491 20 6 0.7967 -10.0688 -1.9330 21 6 1.1104 -11.5679 -1.8793 22 6 1.4790 -11.4586 -3.3694 23 6 1.7717 -9.9700 -3.1113 24 6 1.4368 -4.7343 0.2277 25 1 -0.4850 0.8400 0.0004 26 1 3.9529 -2.4844 -0.0023 27 1 5.2814 -4.5467 0.1909 28 1 4.1539 -6.7231 0.4175 29 1 0.5462 -7.0917 0.9776 30 1 2.1308 -7.8995 1.0479 31 1 2.1354 -7.8630 -1.3821 32 1 -1.3805 -9.9722 -1.3868 33 1 -0.8065 -8.5838 -2.4565 34 1 1.9556 -11.8151 -1.2370 35 1 0.2363 -12.1910 -1.6898 36 1 0.6369 -11.6276 -4.0406 37 1 2.3619 -12.0353 -3.6451 38 1 1.4277 -9.3120 -3.9093 39 1 2.8006 -9.7708 -2.8119 40 1 0.3582 -4.7882 0.2378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721161237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:06 Heat of formation + Delta-G solvation = 44.325991 kcal Electronic energy + Delta-G solvation = -19810.139809 eV Core-core repulsion = 16784.899638 eV Total energy + Delta-G solvation = -3025.240171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72266 -38.99580 -36.87737 -35.26499 -32.63757 -32.19319 -29.86733 -28.78744 -25.92681 -25.46914 -24.41836 -23.19001 -21.60487 -21.17134 -20.59627 -18.46689 -17.62780 -16.94145 -15.95280 -15.58525 -15.39138 -15.11351 -14.72679 -14.36292 -14.13958 -13.53038 -13.36468 -12.99872 -12.76320 -12.51691 -12.42765 -12.16479 -11.87143 -11.62018 -11.59765 -11.45791 -11.24040 -10.80456 -10.74855 -10.58257 -10.45380 -10.42940 -10.25611 -9.76047 -9.30783 -8.81457 -8.21133 -8.02636 -7.20931 -6.41427 -4.00695 2.13425 2.39426 3.14900 3.15947 3.18803 3.65296 3.96601 3.99412 4.45540 4.50127 4.63705 4.66558 4.74070 5.01101 5.08749 5.17647 5.26993 5.37684 5.47680 5.51120 5.53271 5.61057 5.68103 5.73681 5.74349 5.84677 5.90925 5.95348 6.05635 6.15422 6.18369 6.20399 6.39681 6.68945 6.95040 7.09180 7.13974 7.31206 7.36821 7.46030 7.49845 7.84870 8.03342 9.03960 9.74915 10.76639 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032113 B = 0.003148 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.719644 B = 8892.421551 C = 9220.169915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.152 3.848 11 C -0.232 4.232 12 C -0.076 4.076 13 C -0.207 4.207 14 C -0.049 4.049 15 C 0.109 3.891 16 N -0.649 5.649 17 C 0.034 3.966 18 H 0.097 0.903 19 C -0.138 4.138 20 C -0.172 4.172 21 C -0.101 4.101 22 C -0.136 4.136 23 C -0.099 4.099 24 C -0.166 4.166 25 H 0.270 0.730 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.344 0.656 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -18.833 -2.560 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.098 3.902 11 C -0.251 4.251 12 C -0.094 4.094 13 C -0.227 4.227 14 C -0.050 4.050 15 C -0.019 4.019 16 N -0.279 5.279 17 C -0.076 4.076 18 H 0.115 0.885 19 C -0.176 4.176 20 C -0.173 4.173 21 C -0.139 4.139 22 C -0.173 4.173 23 C -0.136 4.136 24 C -0.186 4.186 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.164 0.836 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.732 -18.245 -2.672 18.641 hybrid contribution 1.249 0.370 0.323 1.342 sum 3.982 -17.875 -2.349 18.463 Atomic orbital electron populations 1.70032 1.05937 1.27720 1.46137 1.25275 0.95829 0.98782 0.96613 0.85794 0.78695 0.79859 0.79144 1.19526 1.20290 1.19545 1.21268 0.91737 0.80890 1.52951 0.89193 1.83987 1.34215 1.11372 1.78588 1.19359 0.90239 0.88083 0.92485 1.21182 0.93876 0.98944 1.11134 1.20684 0.98330 0.92359 0.98064 1.20418 0.93516 0.96876 1.11875 1.19144 0.92986 0.93113 0.99739 1.20844 0.99424 0.92337 0.89338 1.60186 1.29398 1.21340 1.17012 1.22325 1.01600 0.89723 0.93975 0.88485 1.23046 0.90522 1.01369 1.02680 1.22666 1.00845 0.94520 0.99282 1.22466 1.01042 0.93543 0.96820 1.22715 1.01361 0.96767 0.96482 1.22361 0.98291 0.96632 0.96355 1.20030 0.99438 0.89667 1.09416 0.92003 0.85662 0.87580 0.88104 0.90331 0.94757 0.83614 0.88861 0.87972 0.90091 0.91581 0.90185 0.91533 0.91146 0.90019 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.12 9.49 30.88 0.29 -10.82 16 8 H 0.09 2.35 5.20 -52.48 -0.27 2.08 16 9 O -0.18 -5.18 9.76 0.02 0.00 -5.18 16 10 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 11 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 13 C -0.21 -3.61 9.70 -39.53 -0.38 -3.99 16 14 C -0.05 -0.89 5.39 -104.65 -0.56 -1.45 16 15 C 0.11 1.59 5.66 -4.98 -0.03 1.56 16 16 N -0.65 -8.96 6.74 -108.22 -0.73 -9.69 16 17 C 0.03 0.40 6.26 -67.93 -0.42 -0.03 16 18 H 0.10 1.06 7.90 -51.93 -0.41 0.65 16 19 C -0.14 -1.51 10.46 -26.95 -0.28 -1.79 16 20 C -0.17 -1.73 2.98 -154.80 -0.46 -2.19 16 21 C -0.10 -0.84 8.10 -26.14 -0.21 -1.06 16 22 C -0.14 -1.09 8.08 -25.81 -0.21 -1.30 16 23 C -0.10 -0.94 7.60 -26.13 -0.20 -1.14 16 24 C -0.17 -3.61 9.65 -39.40 -0.38 -3.99 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 27 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 30 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.34 4.63 8.23 -39.29 -0.32 4.31 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -30.34 336.50 -9.81 -40.15 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.93 Total: 7.84 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -3.96 Total: -29.02 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.03 Total: -34.57 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.34 -9.81 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721161237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.479 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds