Wall clock time and date at job start Mon Mar 30 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38272 * 119.94155 * 2 1 4 4 C 1.38146 * 120.05231 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.02473 * 180.02562 * 4 3 2 6 6 C 1.38726 * 119.94739 * 0.02562 * 4 3 2 7 7 O 1.35897 * 120.05655 * 180.02562 * 6 4 3 8 8 C 1.42905 * 117.00093 * 90.00134 * 7 6 4 9 9 C 1.52997 * 109.47264 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47192 * 54.99822 * 9 8 7 11 11 C 1.47209 * 109.46866 * 294.99890 * 9 8 7 12 12 N 7.36235 * 162.37406 * 181.82272 * 2 1 3 13 13 C 1.53001 * 109.47242 * 175.00315 * 9 8 7 14 14 C 1.50699 * 109.47005 * 184.99914 * 13 9 8 15 15 H 1.07991 * 120.00133 * 0.02562 * 14 13 9 16 16 C 1.37880 * 119.99671 * 179.97438 * 14 13 9 17 17 N 1.31521 * 120.00123 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99878 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47145 * 60.00651 * 18 16 14 20 20 H 1.48509 * 109.47108 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47461 * 300.00221 * 18 16 14 22 22 C 1.38727 * 119.88677 * 0.27631 * 6 4 3 23 23 C 1.50700 * 120.02840 * 179.72013 * 22 6 4 24 24 C 1.38149 * 119.94641 * 359.42205 * 22 6 4 25 25 H 1.09008 * 109.46728 * 90.00169 * 1 2 3 26 26 H 1.08996 * 109.47138 * 209.99633 * 1 2 3 27 27 H 1.09001 * 109.47478 * 330.00218 * 1 2 3 28 28 H 1.07997 * 119.97411 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47204 * 269.97941 * 5 4 3 30 30 H 1.08999 * 109.47467 * 29.98045 * 5 4 3 31 31 H 1.09006 * 109.47334 * 149.97843 * 5 4 3 32 32 H 1.09001 * 109.47103 * 300.00408 * 8 7 6 33 33 H 1.09004 * 109.47054 * 59.99912 * 8 7 6 34 34 H 1.09005 * 109.46584 * 305.00085 * 13 9 8 35 35 H 1.09000 * 109.47396 * 64.99207 * 13 9 8 36 36 H 0.96996 * 119.99988 * 180.02562 * 17 16 14 37 37 H 1.09005 * 109.47049 * 89.99812 * 23 22 6 38 38 H 1.08998 * 109.47654 * 209.99728 * 23 22 6 39 39 H 1.09000 * 109.47155 * 330.00369 * 23 22 6 40 40 H 1.08000 * 119.97692 * 180.31789 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.3301 2.5071 0.0011 6 6 4.2734 0.0001 0.0005 7 8 5.6324 0.0002 0.0016 8 6 6.2802 -0.0004 1.2754 9 6 7.7971 0.0004 1.0761 10 1 8.0802 0.8427 0.4449 11 6 8.2077 -1.2569 0.4298 12 7 8.5237 -2.2282 -0.0709 13 6 8.4899 0.1254 2.4345 14 6 9.9778 0.2497 2.2300 15 1 10.3882 0.2408 1.2311 16 6 10.8150 0.3757 3.3182 17 7 10.3152 0.3870 4.5347 18 14 12.6594 0.5290 3.0648 19 1 12.9483 1.7354 2.2484 20 1 13.3318 0.6505 4.3834 21 1 13.1644 -0.6774 2.3615 22 6 3.5786 -1.2006 -0.0058 23 6 4.3303 -2.5068 -0.0122 24 6 2.1972 -1.1980 0.0000 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6557 2.1327 0.0004 29 1 4.5120 2.8220 -1.0264 30 1 3.7396 3.2658 0.5146 31 1 5.2824 2.3782 0.5156 32 1 5.9868 0.8893 1.8326 33 1 5.9869 -0.8907 1.8318 34 1 8.1190 1.0105 2.9514 35 1 8.2781 -0.7604 3.0333 36 1 10.9042 0.4761 5.3002 37 1 4.5112 -2.8269 1.0140 38 1 3.7403 -3.2630 -0.5300 39 1 5.2831 -2.3752 -0.5250 40 1 1.6558 -2.1325 0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153000000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:21 Heat of formation + Delta-G solvation = -18.378042 kcal Electronic energy + Delta-G solvation = -20335.417140 eV Core-core repulsion = 17307.457919 eV Total energy + Delta-G solvation = -3027.959222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26733 -37.83081 -36.07530 -33.83115 -33.58585 -32.79687 -31.72708 -28.03087 -27.48431 -26.72330 -25.78151 -23.52189 -21.86013 -20.96483 -20.64143 -17.61315 -17.17196 -16.62217 -16.19593 -15.13568 -14.69055 -14.54788 -14.04555 -14.02924 -13.66931 -13.22814 -13.11281 -13.06970 -12.99230 -12.67575 -12.62321 -12.46813 -12.28498 -11.98279 -11.77619 -11.47200 -11.28602 -11.16874 -11.13803 -10.99131 -10.68120 -10.61558 -10.31806 -9.70733 -9.64560 -9.33317 -8.61277 -8.49317 -8.28812 -6.13846 -4.17594 1.17446 1.30801 3.29492 3.33770 3.34714 3.39415 3.59870 3.68763 4.02891 4.38880 4.69761 4.71388 4.74644 4.77927 5.18900 5.18982 5.24317 5.38862 5.41485 5.42090 5.48655 5.54787 5.60324 5.65831 5.69457 5.73356 5.76534 5.83325 5.86225 6.12264 6.26608 6.30434 6.39056 6.42310 6.48602 6.60323 6.81005 7.33625 7.43329 7.70817 7.81246 8.16554 8.43965 8.86362 9.48148 10.97013 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029208 B = 0.003832 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.419359 B = 7306.023037 C = 7737.740415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.117 4.117 4 C -0.094 4.094 5 C -0.113 4.113 6 C 0.095 3.905 7 O -0.333 6.333 8 C 0.074 3.926 9 C 0.012 3.988 10 H 0.111 0.889 11 C 0.247 3.753 12 N -0.471 5.471 13 C 0.034 3.966 14 C -0.528 4.528 15 H 0.058 0.942 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.894 3.106 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.093 4.093 23 C -0.114 4.114 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.997 2.486 -6.701 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.094 4.094 5 C -0.169 4.169 6 C 0.051 3.949 7 O -0.251 6.251 8 C -0.001 4.001 9 C -0.010 4.010 10 H 0.129 0.871 11 C -0.070 4.070 12 N -0.148 5.148 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.094 4.094 23 C -0.171 4.171 24 C -0.135 4.135 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.335 1.031 -7.412 19.804 hybrid contribution 0.852 0.425 0.350 1.014 sum -17.483 1.455 -7.062 18.912 Atomic orbital electron populations 1.20754 0.91239 1.02644 1.02137 1.19861 0.95964 0.93052 1.00279 1.20761 0.92867 0.97560 1.02364 1.20223 0.93879 0.95283 1.00049 1.20736 1.00432 0.93098 1.02678 1.18345 0.83368 0.91352 1.01788 1.86037 1.14775 1.94303 1.29971 1.22936 0.91476 1.01899 0.83750 1.19295 0.91489 0.89150 1.01078 0.87082 1.28987 0.91861 0.94288 0.91877 1.81065 1.10047 1.12311 1.11362 1.19159 0.95150 0.98946 0.87118 1.21053 0.91066 1.51416 0.93088 0.92364 1.24946 0.99023 0.94811 0.95092 1.69926 1.35551 1.49560 0.97895 0.86620 0.85021 0.78873 0.77382 1.19965 1.21150 1.20186 1.20231 0.93903 0.95300 0.99947 1.20721 1.00616 0.93229 1.02538 1.20762 0.92832 0.97608 1.02334 0.91339 0.91664 0.91622 0.85923 0.90964 0.91699 0.90642 0.90952 0.92433 0.94083 0.95378 0.92643 0.91197 0.91675 0.90653 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.00 0.36 -0.47 16 2 C -0.09 -0.97 5.88 -104.60 -0.62 -1.59 16 3 C -0.12 -1.30 9.35 -39.60 -0.37 -1.67 16 4 C -0.09 -1.19 5.89 -104.48 -0.62 -1.81 16 5 C -0.11 -1.25 9.79 36.00 0.35 -0.89 16 6 C 0.10 1.38 5.67 -39.22 -0.22 1.15 16 7 O -0.33 -5.28 8.06 -19.42 -0.16 -5.44 16 8 C 0.07 1.18 5.04 37.16 0.19 1.36 16 9 C 0.01 0.22 2.45 -93.40 -0.23 -0.01 16 10 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 11 C 0.25 5.19 13.72 -20.71 -0.28 4.90 16 12 N -0.47 -10.62 18.55 42.21 0.78 -9.84 16 13 C 0.03 0.79 4.42 -27.88 -0.12 0.66 16 14 C -0.53 -13.91 8.60 -34.44 -0.30 -14.20 16 15 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.09 -1.26 5.89 -104.47 -0.62 -1.87 16 23 C -0.11 -1.50 9.79 36.01 0.35 -1.14 16 24 C -0.12 -1.35 9.35 -39.61 -0.37 -1.72 16 25 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.07 0.89 6.33 -51.93 -0.33 0.57 16 32 H 0.07 1.03 7.26 -51.93 -0.38 0.65 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.07 1.14 7.53 -51.93 -0.39 0.75 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -29.95 344.54 -7.17 -37.12 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -6.11 Total: -3.02 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.59 Total: -15.66 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 1.52 Total: -34.29 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.16 Total: -5.44 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.95 -7.17 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153000000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.741 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds