Wall clock time and date at job start Mon Mar 30 2020 07:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47378 * 2 1 4 4 C 1.36716 * 120.00493 * 95.31695 * 3 2 1 5 5 H 1.08002 * 119.99495 * 316.50603 * 4 3 2 6 6 C 1.39116 * 120.00150 * 136.50607 * 4 3 2 7 7 N 1.31328 * 119.99805 * 160.02339 * 6 4 3 8 8 Si 1.86801 * 120.00205 * 340.02142 * 6 4 3 9 9 H 1.48498 * 109.46995 * 94.27354 * 8 6 4 10 10 H 1.48495 * 109.47239 * 214.27150 * 8 6 4 11 11 H 1.48498 * 109.46932 * 334.27529 * 8 6 4 12 12 C 1.34784 * 119.99880 * 275.04439 * 3 2 1 13 13 O 1.21758 * 120.00050 * 179.97438 * 12 3 2 14 14 C 1.46235 * 119.99666 * 359.97438 * 12 3 2 15 15 C 1.34978 * 119.99787 * 180.02562 * 14 12 3 16 16 C 1.47134 * 120.00254 * 179.97438 * 15 14 12 17 17 C 1.39904 * 120.17270 * 359.72244 * 16 15 14 18 18 C 1.37855 * 119.82059 * 179.74414 * 17 16 15 19 19 C 1.38431 * 120.17758 * 0.52982 * 18 17 16 20 20 C 1.50698 * 119.82363 * 179.76114 * 19 18 17 21 21 C 1.38387 * 120.34896 * 359.74855 * 19 18 17 22 22 C 1.37896 * 120.17993 * 359.96687 * 21 19 18 23 23 C 1.50696 * 120.09097 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.46891 * 184.81902 * 1 2 3 25 25 H 1.09002 * 109.47164 * 304.81692 * 1 2 3 26 26 H 1.08998 * 109.47398 * 64.82033 * 1 2 3 27 27 H 1.09002 * 109.47083 * 239.99995 * 2 1 3 28 28 H 1.09002 * 109.47701 * 119.99980 * 2 1 3 29 29 H 0.96999 * 119.99740 * 179.97438 * 7 6 4 30 30 H 1.07993 * 120.00053 * 359.97438 * 14 12 3 31 31 H 1.08004 * 119.99749 * 359.97438 * 15 14 12 32 32 H 1.08004 * 120.08489 * 0.02628 * 17 16 15 33 33 H 1.08000 * 119.90696 * 180.27584 * 18 17 16 34 34 H 1.08997 * 109.47630 * 269.98202 * 20 19 18 35 35 H 1.09001 * 109.47333 * 29.98657 * 20 19 18 36 36 H 1.09001 * 109.47129 * 149.98478 * 20 19 18 37 37 H 1.08003 * 119.91066 * 179.97438 * 21 19 18 38 38 H 1.09005 * 109.47034 * 269.98096 * 23 22 21 39 39 H 1.08997 * 109.47154 * 29.98246 * 23 22 21 40 40 H 1.09003 * 109.46947 * 149.98422 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3497 1.9892 1.1788 5 1 1.7099 1.8785 2.0419 6 6 3.5108 2.7504 1.2666 7 7 3.6438 3.6369 2.2264 8 14 4.8808 2.5114 0.0194 9 1 4.7243 3.4947 -1.0823 10 1 6.1942 2.7151 0.6817 11 1 4.8130 1.1346 -0.5326 12 6 2.1462 2.0508 -1.1628 13 8 2.5517 3.1988 -1.1628 14 6 1.7980 1.3983 -2.4243 15 6 1.9266 2.0686 -3.5888 16 6 1.5767 1.4120 -4.8582 17 6 1.1160 0.0910 -4.8629 18 6 0.7853 -0.5154 -6.0560 19 6 0.9185 0.1755 -7.2481 20 6 0.5597 -0.4969 -8.5482 21 6 1.3790 1.4805 -7.2523 22 6 1.7084 2.1032 -6.0669 23 6 2.2092 3.5245 -6.0737 24 1 -0.3633 -1.0240 0.0863 25 1 -0.3633 0.5868 0.8437 26 1 -0.3634 0.4372 -0.9300 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.4536 4.1674 2.2878 30 1 1.4388 0.3798 -2.4243 31 1 2.2862 3.0870 -3.5887 32 1 1.0154 -0.4507 -3.9340 33 1 0.4253 -1.5336 -6.0608 34 1 1.4384 -0.9999 -8.9517 35 1 -0.2293 -1.2283 -8.3733 36 1 0.2105 0.2511 -9.2599 37 1 1.4805 2.0128 -8.1866 38 1 3.2955 3.5266 -6.1644 39 1 1.7731 4.0593 -6.9174 40 1 1.9213 4.0156 -5.1441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:17 Heat of formation + Delta-G solvation = 7.765328 kcal Electronic energy + Delta-G solvation = -20659.877554 eV Core-core repulsion = 17633.051994 eV Total energy + Delta-G solvation = -3026.825560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -39.64220 -38.80347 -35.05735 -34.44051 -32.86092 -32.26981 -30.74772 -29.66499 -27.41256 -26.83418 -24.79898 -23.10727 -22.51541 -21.21861 -19.96614 -18.48896 -17.46802 -16.22324 -15.83275 -15.36972 -15.00211 -14.68648 -14.14931 -14.00044 -13.57802 -13.32280 -13.27223 -13.16610 -13.04568 -12.78620 -12.52461 -12.35297 -12.08655 -12.00799 -11.81285 -11.72266 -11.20609 -10.97379 -10.81570 -10.70056 -10.48184 -10.32917 -9.94304 -9.73275 -8.76329 -8.59130 -8.49691 -7.81922 -7.56707 -6.23751 -3.94727 0.80954 1.40376 2.36132 3.41467 3.48352 3.65959 3.82332 4.35608 4.46341 4.60326 4.70135 4.76780 4.88671 5.02679 5.15406 5.21135 5.25982 5.40764 5.44399 5.46261 5.58689 5.63015 5.66966 5.70748 5.79000 5.88100 5.91463 6.01817 6.15786 6.16997 6.24359 6.31298 6.44500 6.50034 6.54674 6.72287 6.85319 6.95467 7.02829 7.82461 8.01676 8.77930 8.95446 9.40112 9.86335 10.81595 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.004931 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.155401 B = 5676.870670 C = 6411.257626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.450 5.450 4 C -0.347 4.347 5 H 0.095 0.905 6 C 0.094 3.906 7 N -0.859 5.859 8 Si 0.908 3.092 9 H -0.253 1.253 10 H -0.305 1.305 11 H -0.279 1.279 12 C 0.465 3.535 13 O -0.553 6.553 14 C -0.167 4.167 15 C -0.081 4.081 16 C -0.056 4.056 17 C -0.105 4.105 18 C -0.126 4.126 19 C -0.090 4.090 20 C -0.112 4.112 21 C -0.123 4.123 22 C -0.068 4.068 23 C -0.121 4.121 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 -9.075 -18.123 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.171 5.171 4 C -0.473 4.473 5 H 0.112 0.888 6 C -0.116 4.116 7 N -0.493 5.493 8 Si 0.738 3.262 9 H -0.179 1.179 10 H -0.235 1.235 11 H -0.205 1.205 12 C 0.258 3.742 13 O -0.438 6.438 14 C -0.188 4.188 15 C -0.101 4.101 16 C -0.056 4.056 17 C -0.123 4.123 18 C -0.144 4.144 19 C -0.090 4.090 20 C -0.169 4.169 21 C -0.141 4.141 22 C -0.068 4.068 23 C -0.178 4.178 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.118 -8.376 -17.951 20.460 hybrid contribution 0.622 -0.265 -0.403 0.787 sum -4.496 -8.641 -18.354 20.779 Atomic orbital electron populations 1.22191 0.96847 1.00929 1.02422 1.21630 0.93938 0.85530 1.01686 1.43576 1.57438 1.09951 1.06104 1.18819 1.07822 1.31409 0.89224 0.88761 1.25345 0.97827 0.92978 0.95467 1.69727 1.27524 1.18597 1.33434 0.86427 0.78412 0.79207 0.82139 1.17859 1.23453 1.20490 1.18201 0.84801 0.86786 0.84424 1.90656 1.49015 1.17748 1.86348 1.23389 1.01702 1.00047 0.93688 1.22224 0.97683 1.00172 0.90056 1.18986 0.99966 0.93804 0.92808 1.21400 0.98394 0.94267 0.98241 1.20892 1.01825 0.99761 0.91919 1.19945 0.99391 0.94395 0.95264 1.20773 1.01478 1.00341 0.94289 1.20788 1.01279 0.94665 0.97333 1.20070 0.98167 0.96349 0.92239 1.20880 1.01368 0.92252 1.03277 0.92694 0.91967 0.93022 0.92506 0.90345 0.91680 0.86283 0.84841 0.85597 0.86156 0.91346 0.91662 0.91725 0.86185 0.90916 0.91602 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.11 37.15 0.38 -2.24 16 2 C 0.10 1.78 5.72 -4.04 -0.02 1.76 16 3 N -0.45 -11.07 2.15 -116.46 -0.25 -11.32 16 4 C -0.35 -9.93 9.64 -15.05 -0.14 -10.07 16 5 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 6 C 0.09 2.81 4.82 -17.44 -0.08 2.73 16 7 N -0.86 -26.47 13.95 55.50 0.77 -25.70 16 8 Si 0.91 24.66 24.93 -169.99 -4.24 20.42 16 9 H -0.25 -7.19 6.34 56.52 0.36 -6.83 16 10 H -0.31 -8.04 7.11 56.52 0.40 -7.64 16 11 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 12 C 0.47 11.54 5.78 -13.04 -0.08 11.47 16 13 O -0.55 -15.91 11.91 5.14 0.06 -15.84 16 14 C -0.17 -3.25 8.18 -37.53 -0.31 -3.56 16 15 C -0.08 -1.46 8.89 -37.13 -0.33 -1.79 16 16 C -0.06 -0.84 5.87 -105.06 -0.62 -1.46 16 17 C -0.11 -1.41 9.41 -39.10 -0.37 -1.78 16 18 C -0.13 -1.45 9.68 -39.65 -0.38 -1.84 16 19 C -0.09 -0.99 5.89 -104.50 -0.62 -1.60 16 20 C -0.11 -0.88 10.00 36.00 0.36 -0.52 16 21 C -0.12 -1.43 9.33 -39.65 -0.37 -1.80 16 22 C -0.07 -0.92 5.92 -104.14 -0.62 -1.53 16 23 C -0.12 -1.46 9.52 36.00 0.34 -1.11 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.80 7.57 -51.93 -0.39 0.41 16 27 H 0.06 0.92 6.39 -51.93 -0.33 0.59 16 28 H 0.08 1.41 8.00 -51.93 -0.42 1.00 16 29 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 30 H 0.12 1.93 4.11 -52.49 -0.22 1.71 16 31 H 0.13 2.56 5.82 -52.48 -0.31 2.26 16 32 H 0.13 1.54 6.17 -52.48 -0.32 1.22 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.08 1.00 6.33 -51.93 -0.33 0.67 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -34.11 325.94 -7.31 -41.42 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.71 Total: -0.55 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.86 Total: -13.34 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.52 Total: -37.01 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.06 Total: -15.84 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -4.24 Total: 20.42 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.11 -7.31 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.181 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds