Wall clock time and date at job start Mon Mar 30 2020 07:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47378 * 2 1 4 4 C 1.36716 * 120.00493 * 95.31695 * 3 2 1 5 5 H 1.08002 * 119.99495 * 316.50603 * 4 3 2 6 6 C 1.39116 * 120.00150 * 136.50607 * 4 3 2 7 7 N 1.31328 * 119.99805 * 160.02339 * 6 4 3 8 8 Si 1.86801 * 120.00205 * 340.02142 * 6 4 3 9 9 H 1.48498 * 109.46995 * 94.27354 * 8 6 4 10 10 H 1.48495 * 109.47239 * 214.27150 * 8 6 4 11 11 H 1.48498 * 109.46932 * 334.27529 * 8 6 4 12 12 C 1.34784 * 119.99880 * 275.04439 * 3 2 1 13 13 O 1.21758 * 120.00050 * 179.97438 * 12 3 2 14 14 C 1.46235 * 119.99666 * 359.97438 * 12 3 2 15 15 C 1.34978 * 119.99787 * 180.02562 * 14 12 3 16 16 C 1.47134 * 120.00254 * 179.97438 * 15 14 12 17 17 C 1.39904 * 120.17270 * 359.72244 * 16 15 14 18 18 C 1.37855 * 119.82059 * 179.74414 * 17 16 15 19 19 C 1.38431 * 120.17758 * 0.52982 * 18 17 16 20 20 C 1.50698 * 119.82363 * 179.76114 * 19 18 17 21 21 C 1.38387 * 120.34896 * 359.74855 * 19 18 17 22 22 C 1.37896 * 120.17993 * 359.96687 * 21 19 18 23 23 C 1.50696 * 120.09097 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.46891 * 184.81902 * 1 2 3 25 25 H 1.09002 * 109.47164 * 304.81692 * 1 2 3 26 26 H 1.08998 * 109.47398 * 64.82033 * 1 2 3 27 27 H 1.09002 * 109.47083 * 239.99995 * 2 1 3 28 28 H 1.09002 * 109.47701 * 119.99980 * 2 1 3 29 29 H 0.96999 * 119.99740 * 179.97438 * 7 6 4 30 30 H 1.07993 * 120.00053 * 359.97438 * 14 12 3 31 31 H 1.08004 * 119.99749 * 359.97438 * 15 14 12 32 32 H 1.08004 * 120.08489 * 0.02628 * 17 16 15 33 33 H 1.08000 * 119.90696 * 180.27584 * 18 17 16 34 34 H 1.08997 * 109.47630 * 269.98202 * 20 19 18 35 35 H 1.09001 * 109.47333 * 29.98657 * 20 19 18 36 36 H 1.09001 * 109.47129 * 149.98478 * 20 19 18 37 37 H 1.08003 * 119.91066 * 179.97438 * 21 19 18 38 38 H 1.09005 * 109.47034 * 269.98096 * 23 22 21 39 39 H 1.08997 * 109.47154 * 29.98246 * 23 22 21 40 40 H 1.09003 * 109.46947 * 149.98422 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3497 1.9892 1.1788 5 1 1.7099 1.8785 2.0419 6 6 3.5108 2.7504 1.2666 7 7 3.6438 3.6369 2.2264 8 14 4.8808 2.5114 0.0194 9 1 4.7243 3.4947 -1.0823 10 1 6.1942 2.7151 0.6817 11 1 4.8130 1.1346 -0.5326 12 6 2.1462 2.0508 -1.1628 13 8 2.5517 3.1988 -1.1628 14 6 1.7980 1.3983 -2.4243 15 6 1.9266 2.0686 -3.5888 16 6 1.5767 1.4120 -4.8582 17 6 1.1160 0.0910 -4.8629 18 6 0.7853 -0.5154 -6.0560 19 6 0.9185 0.1755 -7.2481 20 6 0.5597 -0.4969 -8.5482 21 6 1.3790 1.4805 -7.2523 22 6 1.7084 2.1032 -6.0669 23 6 2.2092 3.5245 -6.0737 24 1 -0.3633 -1.0240 0.0863 25 1 -0.3633 0.5868 0.8437 26 1 -0.3634 0.4372 -0.9300 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 4.4536 4.1674 2.2878 30 1 1.4388 0.3798 -2.4243 31 1 2.2862 3.0870 -3.5887 32 1 1.0154 -0.4507 -3.9340 33 1 0.4253 -1.5336 -6.0608 34 1 1.4384 -0.9999 -8.9517 35 1 -0.2293 -1.2283 -8.3733 36 1 0.2105 0.2511 -9.2599 37 1 1.4805 2.0128 -8.1866 38 1 3.2955 3.5266 -6.1644 39 1 1.7731 4.0593 -6.9174 40 1 1.9213 4.0156 -5.1441 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:16 Heat of formation + Delta-G solvation = -12.587014 kcal Electronic energy + Delta-G solvation = -20660.760098 eV Core-core repulsion = 17633.051994 eV Total energy + Delta-G solvation = -3027.708104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.96288 -40.33846 -36.83932 -35.68146 -34.51118 -33.73589 -31.88879 -31.28557 -28.41734 -28.01592 -26.47856 -24.51956 -23.72679 -22.56140 -21.24488 -20.09316 -19.15524 -17.86414 -17.48003 -16.70730 -16.47567 -15.85522 -15.61209 -15.39031 -15.01462 -14.83083 -14.74533 -14.25047 -14.21501 -14.03348 -13.94826 -13.79975 -13.47087 -12.96086 -12.89557 -12.82402 -12.80921 -12.57083 -12.29488 -12.11504 -11.93836 -11.88955 -11.68752 -11.08740 -10.76612 -10.48073 -9.69284 -9.60738 -8.97196 -8.48805 -6.19805 -0.39085 0.47613 1.02030 1.26140 1.34153 1.45411 2.28931 2.53727 2.69800 2.91389 3.11084 3.70630 3.77999 3.92670 3.96742 4.14729 4.16321 4.32887 4.38981 4.44953 4.50956 4.65865 4.67492 4.72845 4.79511 4.87010 4.90102 4.96812 5.04672 5.07027 5.10995 5.22929 5.32826 5.36516 5.41681 5.57264 5.67182 5.67917 5.75923 5.87233 6.08806 6.74407 6.89604 7.30212 7.88232 8.60830 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.004931 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.155401 B = 5676.870670 C = 6411.257626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.089 3.911 3 N -0.467 5.467 4 C -0.349 4.349 5 H 0.070 0.930 6 C 0.048 3.952 7 N -0.905 5.905 8 Si 0.956 3.044 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.263 1.263 12 C 0.465 3.535 13 O -0.604 6.604 14 C -0.197 4.197 15 C -0.046 4.046 16 C -0.096 4.096 17 C -0.103 4.103 18 C -0.132 4.132 19 C -0.078 4.078 20 C -0.113 4.113 21 C -0.131 4.131 22 C -0.072 4.072 23 C -0.124 4.124 24 H 0.097 0.903 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.274 0.726 30 H 0.156 0.844 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.145 0.855 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.444 -12.129 -22.167 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.033 4.033 3 N -0.188 5.188 4 C -0.477 4.477 5 H 0.088 0.912 6 C -0.157 4.157 7 N -0.542 5.542 8 Si 0.785 3.215 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.187 1.187 12 C 0.259 3.741 13 O -0.493 6.493 14 C -0.218 4.218 15 C -0.066 4.066 16 C -0.096 4.096 17 C -0.121 4.121 18 C -0.150 4.150 19 C -0.078 4.078 20 C -0.169 4.169 21 C -0.149 4.149 22 C -0.072 4.072 23 C -0.180 4.180 24 H 0.116 0.884 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.174 0.826 31 H 0.130 0.870 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.162 0.838 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.174 -11.486 -21.995 25.570 hybrid contribution 0.783 0.654 0.521 1.146 sum -5.391 -10.832 -21.474 24.648 Atomic orbital electron populations 1.22113 0.94637 1.03196 1.01501 1.21936 0.95712 0.82292 1.03388 1.43768 1.57987 1.12312 1.04690 1.18744 1.07028 1.31782 0.90111 0.91250 1.25970 0.99836 0.93168 0.96753 1.69806 1.28393 1.20462 1.35513 0.85640 0.77019 0.79090 0.79744 1.20647 1.22427 1.18723 1.19085 0.82616 0.86297 0.86111 1.90615 1.51007 1.20217 1.87418 1.23124 1.05658 1.01876 0.91103 1.22371 0.93837 0.98970 0.91454 1.18927 1.03662 0.95225 0.91758 1.21611 0.97390 0.93392 0.99696 1.21256 1.01352 1.01084 0.91291 1.20449 0.96668 0.93994 0.96667 1.20870 1.02484 1.00879 0.92690 1.21105 1.00955 0.95307 0.97491 1.20302 0.97681 0.96720 0.92538 1.20918 1.01739 0.92059 1.03282 0.88408 0.94536 0.92634 0.89244 0.90168 0.91641 0.82633 0.87034 0.84526 0.83316 0.90091 0.90269 0.90517 0.83758 0.90633 0.89158 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.63 10.11 71.98 0.73 -3.90 16 2 C 0.09 3.16 5.72 86.38 0.49 3.65 16 3 N -0.47 -23.19 2.15 -640.56 -1.37 -24.56 16 4 C -0.35 -20.78 9.64 84.14 0.81 -19.97 16 5 H 0.07 4.35 8.06 -2.91 -0.02 4.33 16 6 C 0.05 2.97 4.82 84.98 0.41 3.38 16 7 N -0.90 -58.52 13.95 21.69 0.30 -58.22 16 8 Si 0.96 52.55 24.93 68.60 1.71 54.26 16 9 H -0.28 -16.41 6.34 99.48 0.63 -15.78 16 10 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 11 H -0.26 -13.46 7.11 99.48 0.71 -12.76 16 12 C 0.46 23.37 5.78 86.32 0.50 23.87 16 13 O -0.60 -36.14 11.91 -4.53 -0.05 -36.20 16 14 C -0.20 -7.48 8.18 23.60 0.19 -7.29 16 15 C -0.05 -1.63 8.89 23.86 0.21 -1.42 16 16 C -0.10 -2.71 5.87 -20.15 -0.12 -2.83 16 17 C -0.10 -2.40 9.41 22.58 0.21 -2.19 16 18 C -0.13 -2.44 9.68 22.23 0.22 -2.22 16 19 C -0.08 -1.34 5.89 -19.78 -0.12 -1.46 16 20 C -0.11 -1.17 10.00 71.24 0.71 -0.45 16 21 C -0.13 -2.54 9.33 22.22 0.21 -2.34 16 22 C -0.07 -1.79 5.92 -19.55 -0.12 -1.90 16 23 C -0.12 -2.82 9.52 71.23 0.68 -2.14 16 24 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 27 H 0.09 2.59 6.39 -2.39 -0.02 2.58 16 28 H 0.08 2.80 8.00 -2.39 -0.02 2.78 16 29 H 0.27 16.68 8.31 -92.71 -0.77 15.91 16 30 H 0.16 4.59 4.11 -2.91 -0.01 4.58 16 31 H 0.11 4.43 5.82 -2.91 -0.02 4.42 16 32 H 0.14 2.79 6.17 -2.91 -0.02 2.78 16 33 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 36 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 37 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.09 1.57 8.09 -2.39 -0.02 1.55 16 40 H 0.06 1.49 6.33 -2.39 -0.02 1.48 16 Total: -1.00 -79.06 325.94 6.56 -72.50 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.95 Total: 9.44 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 5.02 Total: -17.22 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.07 Total: -82.78 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.05 Total: -36.20 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 1.71 Total: 54.26 kcal Total: -79.06 6.56 -72.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.909 kcal (2) G-P(sol) polarization free energy of solvation -79.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds