Wall clock time and date at job start Mon Mar 30 2020 08:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48505 * 109.47234 * 239.99561 * 3 2 1 5 5 H 1.48495 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46975 * 120.00042 * 3 2 1 7 7 C 1.37880 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99688 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46834 * 180.02562 * 9 7 2 11 11 C 1.39005 * 119.99994 * 90.00703 * 10 9 7 12 12 C 1.39355 * 120.22847 * 88.26811 * 11 10 9 13 13 N 1.31614 * 119.63567 * 179.83383 * 12 11 10 14 14 C 1.32980 * 120.71841 * 0.62103 * 13 12 11 15 15 C 1.37610 * 119.80658 * 359.46404 * 14 13 12 16 16 N 1.32353 * 120.22395 * 268.54201 * 11 10 9 17 17 C 1.50631 * 122.60201 * 180.51375 * 15 14 13 18 18 C 1.52740 * 110.56193 * 342.27437 * 17 15 14 19 19 C 1.53318 * 108.39688 * 51.06302 * 18 17 15 20 20 C 1.50645 * 117.62253 * 179.29626 * 14 13 12 21 21 C 1.46500 * 120.00168 * 269.72731 * 10 9 7 22 22 C 1.52999 * 117.49846 * 183.63561 * 21 10 9 23 23 C 1.53001 * 117.49974 * 115.01061 * 21 10 9 24 24 H 0.97000 * 119.99904 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46865 * 60.00511 * 9 7 2 26 26 H 1.08995 * 109.47350 * 300.00420 * 9 7 2 27 27 H 1.07999 * 120.18056 * 0.09483 * 12 11 10 28 28 H 1.08998 * 109.25494 * 102.55462 * 17 15 14 29 29 H 1.08995 * 109.25564 * 222.03095 * 17 15 14 30 30 H 1.09005 * 109.67733 * 170.79172 * 18 17 15 31 31 H 1.09000 * 109.67889 * 291.33721 * 18 17 15 32 32 H 1.08993 * 109.68161 * 49.85980 * 19 18 17 33 33 H 1.09008 * 109.68086 * 170.40256 * 19 18 17 34 34 H 1.08997 * 109.25466 * 42.13074 * 20 14 13 35 35 H 1.08996 * 109.22769 * 282.66546 * 20 14 13 36 36 H 1.09004 * 115.54811 * 329.33662 * 21 10 9 37 37 H 1.08996 * 117.50202 * 359.97438 * 22 21 10 38 38 H 1.09001 * 117.50045 * 145.02316 * 22 21 10 39 39 H 1.08997 * 117.49569 * 214.97809 * 23 21 10 40 40 H 1.08999 * 117.49501 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6547 -4.1399 1.2070 12 6 1.9474 -5.1641 1.8335 13 7 2.3873 -5.6570 2.9719 14 6 3.4925 -5.1799 3.5367 15 6 4.1926 -4.1672 2.9218 16 7 3.7564 -3.6688 1.7691 17 6 5.4574 -3.5879 3.4996 18 6 5.5820 -3.9416 4.9802 19 6 5.3875 -5.4546 5.1343 20 6 3.9239 -5.7842 4.8475 21 6 2.6746 -4.1744 -1.2655 22 6 3.6012 -5.3900 -1.1985 23 6 4.1606 -4.0226 -1.5964 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 1.0455 -5.5542 1.3853 28 1 6.3155 -3.9892 2.9606 29 1 5.4389 -2.5036 3.3898 30 1 6.5705 -3.6597 5.3430 31 1 4.8171 -3.4134 5.5494 32 1 6.0278 -5.9810 4.4266 33 1 5.6389 -5.7554 6.1514 34 1 3.8012 -6.8663 4.8021 35 1 3.3018 -5.3852 5.6487 36 1 1.9670 -4.1255 -2.0933 37 1 3.8604 -5.7715 -0.2110 38 1 3.5035 -6.1412 -1.9823 39 1 4.4308 -3.8742 -2.6419 40 1 4.7876 -3.5051 -0.8703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310797253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:55 Heat of formation + Delta-G solvation = 75.846307 kcal Electronic energy + Delta-G solvation = -21258.176617 eV Core-core repulsion = 18266.596020 eV Total energy + Delta-G solvation = -2991.580596 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.154 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -40.92206 -37.81743 -36.32110 -34.23395 -33.54959 -32.08530 -30.15925 -29.49814 -26.63907 -24.56035 -23.54685 -22.56641 -22.35526 -21.81433 -20.79710 -19.26080 -17.48332 -16.31452 -16.12992 -15.93217 -15.48314 -14.73973 -14.39927 -14.33688 -13.91971 -13.86182 -13.14435 -13.01028 -12.64848 -12.47266 -12.18371 -11.73499 -11.25367 -11.14632 -11.11683 -11.04507 -10.94891 -10.86453 -10.80726 -10.59054 -10.45259 -10.23338 -10.13210 -9.73471 -9.42051 -8.68229 -8.41607 -8.34737 -6.94753 -5.95952 -4.02048 1.22956 1.63397 3.34880 3.38292 3.42389 3.80686 4.06613 4.34842 4.41319 4.48270 4.65342 4.77191 4.81746 4.85592 5.16152 5.29553 5.34954 5.39329 5.43249 5.51150 5.53893 5.63530 5.72463 5.74130 5.80861 5.89645 5.96314 5.98087 6.00993 6.23434 6.28162 6.32311 6.44059 6.62578 6.70984 7.15773 7.35995 7.75115 7.95379 8.27148 8.33250 8.40983 8.59451 9.08727 9.63592 11.08290 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.006272 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.542421 B = 4463.061763 C = 5219.532261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.277 3.723 10 N -0.629 5.629 11 C 0.370 3.630 12 C 0.048 3.952 13 N -0.443 5.443 14 C 0.053 3.947 15 C 0.096 3.904 16 N -0.447 5.447 17 C -0.066 4.066 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.058 4.058 21 C 0.140 3.860 22 C -0.206 4.206 23 C -0.204 4.204 24 H 0.262 0.738 25 H 0.033 0.967 26 H 0.020 0.980 27 H 0.165 0.835 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 -11.637 6.266 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.159 3.841 10 N -0.355 5.355 11 C 0.137 3.863 12 C -0.119 4.119 13 N -0.158 5.158 14 C -0.085 4.085 15 C -0.043 4.043 16 N -0.165 5.165 17 C -0.104 4.104 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.096 4.096 21 C 0.033 3.967 22 C -0.244 4.244 23 C -0.244 4.244 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.182 0.818 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.840 -11.465 6.269 15.777 hybrid contribution 0.427 1.183 -0.144 1.266 sum 9.267 -10.282 6.124 15.136 Atomic orbital electron populations 1.69923 1.05934 1.26899 1.51431 1.24971 0.94810 0.99098 0.95523 0.86623 0.79521 0.83022 0.78620 1.20257 1.21407 1.20437 1.21737 0.93964 0.90803 1.49498 0.91889 1.19011 0.86089 0.81831 0.97212 1.45769 1.51638 1.40444 0.97611 1.19019 0.88811 0.89530 0.88932 1.24060 1.00654 0.95176 0.92032 1.68183 1.11630 1.26603 1.09352 1.21653 0.92865 0.95955 0.97997 1.21758 0.97279 0.93543 0.91729 1.68465 1.14500 1.24934 1.08574 1.20327 0.93246 1.01826 0.95035 1.21587 1.02336 0.96151 0.95678 1.21582 0.95760 0.96454 1.01897 1.20217 0.96239 1.00861 0.92317 1.21177 0.90840 0.96281 0.88419 1.23192 1.07185 0.92099 1.01941 1.23431 1.00836 0.98595 1.01525 0.92874 0.94872 0.96185 0.81832 0.90069 0.89511 0.90880 0.91330 0.91516 0.90926 0.90097 0.90127 0.86245 0.90375 0.88912 0.89399 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.72 9.39 -34.44 -0.32 -15.05 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.28 7.11 5.48 -5.20 -0.03 7.08 16 10 N -0.63 -13.58 2.81 -167.56 -0.47 -14.05 16 11 C 0.37 7.63 4.49 -154.97 -0.70 6.93 16 12 C 0.05 0.88 11.18 -17.23 -0.19 0.69 16 13 N -0.44 -7.81 10.32 -9.18 -0.09 -7.90 16 14 C 0.05 0.84 6.61 -82.35 -0.54 0.30 16 15 C 0.10 1.66 6.60 -82.37 -0.54 1.12 16 16 N -0.45 -9.23 10.36 -8.55 -0.09 -9.32 16 17 C -0.07 -0.89 5.92 -28.05 -0.17 -1.05 16 18 C -0.12 -1.22 5.98 -26.70 -0.16 -1.38 16 19 C -0.12 -1.11 5.98 -26.70 -0.16 -1.27 16 20 C -0.06 -0.68 5.92 -28.04 -0.17 -0.84 16 21 C 0.14 2.58 6.57 -67.93 -0.45 2.13 16 22 C -0.21 -3.27 9.83 -26.73 -0.26 -3.53 16 23 C -0.20 -3.55 10.36 -26.73 -0.28 -3.83 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 26 H 0.02 0.56 8.05 -51.93 -0.42 0.14 16 27 H 0.16 2.73 8.06 -52.49 -0.42 2.30 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 37 H 0.08 1.35 7.06 -51.93 -0.37 0.98 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 LS Contribution 332.35 15.07 5.01 5.01 Total: -1.00 -31.17 332.35 -10.23 -41.40 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.24 Total: 0.80 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -4.06 Total: -7.18 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.08 Total: -57.18 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.17 -10.23 -41.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310797253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.249 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds