Wall clock time and date at job start Mon Mar 30 2020 08:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48505 * 109.47234 * 239.99561 * 3 2 1 5 5 H 1.48495 * 109.47406 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46975 * 120.00042 * 3 2 1 7 7 C 1.37880 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99688 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99996 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46834 * 180.02562 * 9 7 2 11 11 C 1.39005 * 119.99994 * 90.00703 * 10 9 7 12 12 C 1.39355 * 120.22847 * 88.26811 * 11 10 9 13 13 N 1.31614 * 119.63567 * 179.83383 * 12 11 10 14 14 C 1.32980 * 120.71841 * 0.62103 * 13 12 11 15 15 C 1.37610 * 119.80658 * 359.46404 * 14 13 12 16 16 N 1.32353 * 120.22395 * 268.54201 * 11 10 9 17 17 C 1.50631 * 122.60201 * 180.51375 * 15 14 13 18 18 C 1.52740 * 110.56193 * 342.27437 * 17 15 14 19 19 C 1.53318 * 108.39688 * 51.06302 * 18 17 15 20 20 C 1.50645 * 117.62253 * 179.29626 * 14 13 12 21 21 C 1.46500 * 120.00168 * 269.72731 * 10 9 7 22 22 C 1.52999 * 117.49846 * 183.63561 * 21 10 9 23 23 C 1.53001 * 117.49974 * 115.01061 * 21 10 9 24 24 H 0.97000 * 119.99904 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46865 * 60.00511 * 9 7 2 26 26 H 1.08995 * 109.47350 * 300.00420 * 9 7 2 27 27 H 1.07999 * 120.18056 * 0.09483 * 12 11 10 28 28 H 1.08998 * 109.25494 * 102.55462 * 17 15 14 29 29 H 1.08995 * 109.25564 * 222.03095 * 17 15 14 30 30 H 1.09005 * 109.67733 * 170.79172 * 18 17 15 31 31 H 1.09000 * 109.67889 * 291.33721 * 18 17 15 32 32 H 1.08993 * 109.68161 * 49.85980 * 19 18 17 33 33 H 1.09008 * 109.68086 * 170.40256 * 19 18 17 34 34 H 1.08997 * 109.25466 * 42.13074 * 20 14 13 35 35 H 1.08996 * 109.22769 * 282.66546 * 20 14 13 36 36 H 1.09004 * 115.54811 * 329.33662 * 21 10 9 37 37 H 1.08996 * 117.50202 * 359.97438 * 22 21 10 38 38 H 1.09001 * 117.50045 * 145.02316 * 22 21 10 39 39 H 1.08997 * 117.49569 * 214.97809 * 23 21 10 40 40 H 1.08999 * 117.49501 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6547 -4.1399 1.2070 12 6 1.9474 -5.1641 1.8335 13 7 2.3873 -5.6570 2.9719 14 6 3.4925 -5.1799 3.5367 15 6 4.1926 -4.1672 2.9218 16 7 3.7564 -3.6688 1.7691 17 6 5.4574 -3.5879 3.4996 18 6 5.5820 -3.9416 4.9802 19 6 5.3875 -5.4546 5.1343 20 6 3.9239 -5.7842 4.8475 21 6 2.6746 -4.1744 -1.2655 22 6 3.6012 -5.3900 -1.1985 23 6 4.1606 -4.0226 -1.5964 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 1.0455 -5.5542 1.3853 28 1 6.3155 -3.9892 2.9606 29 1 5.4389 -2.5036 3.3898 30 1 6.5705 -3.6597 5.3430 31 1 4.8171 -3.4134 5.5494 32 1 6.0278 -5.9810 4.4266 33 1 5.6389 -5.7554 6.1514 34 1 3.8012 -6.8663 4.8021 35 1 3.3018 -5.3852 5.6487 36 1 1.9670 -4.1255 -2.0933 37 1 3.8604 -5.7715 -0.2110 38 1 3.5035 -6.1412 -1.9823 39 1 4.4308 -3.8742 -2.6419 40 1 4.7876 -3.5051 -0.8703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310797253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:54 Heat of formation + Delta-G solvation = 57.901558 kcal Electronic energy + Delta-G solvation = -21258.954759 eV Core-core repulsion = 18266.596020 eV Total energy + Delta-G solvation = -2992.358739 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.154 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.28094 -39.20784 -37.43901 -35.73357 -35.31811 -33.89762 -31.28738 -30.90469 -28.51878 -25.88494 -24.98967 -24.18414 -23.73836 -23.17183 -22.00808 -20.50809 -18.95391 -18.36208 -17.60221 -17.32424 -17.05485 -16.23623 -15.95242 -15.61907 -15.02756 -14.85088 -14.59955 -14.47350 -14.11384 -13.81934 -13.76440 -13.16379 -13.04418 -12.77903 -12.59766 -12.47919 -12.34916 -12.22996 -12.20810 -12.07864 -11.73073 -11.65993 -11.43222 -11.38419 -11.21030 -10.61418 -10.11374 -9.72463 -8.67990 -8.07593 -6.29914 -0.16033 0.20373 1.34780 1.36617 1.45111 2.25818 2.41911 2.67271 3.00766 3.10357 3.15862 3.37269 3.57466 3.76744 3.98374 4.00942 4.04359 4.13213 4.16918 4.27437 4.44337 4.56266 4.59255 4.68248 4.71372 4.87529 4.89077 5.00277 5.03288 5.07664 5.14905 5.18112 5.20134 5.24449 5.28445 5.43708 5.46477 5.71428 6.15667 6.34062 6.50746 6.86446 6.89914 7.06104 7.41095 8.87395 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015918 B = 0.006272 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.542421 B = 4463.061763 C = 5219.532261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.046 0.954 9 C 0.296 3.704 10 N -0.634 5.634 11 C 0.342 3.658 12 C 0.041 3.959 13 N -0.449 5.449 14 C 0.058 3.942 15 C 0.084 3.916 16 N -0.481 5.481 17 C -0.065 4.065 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.058 4.058 21 C 0.110 3.890 22 C -0.171 4.171 23 C -0.205 4.205 24 H 0.265 0.735 25 H 0.021 0.979 26 H -0.010 1.010 27 H 0.174 0.826 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.847 -12.605 7.370 18.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.064 0.936 9 C 0.175 3.825 10 N -0.360 5.360 11 C 0.110 3.890 12 C -0.125 4.125 13 N -0.164 5.164 14 C -0.080 4.080 15 C -0.056 4.056 16 N -0.200 5.200 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.149 4.149 20 C -0.096 4.096 21 C 0.005 3.995 22 C -0.209 4.209 23 C -0.245 4.245 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.008 0.992 27 H 0.191 0.809 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.644 -12.461 7.354 17.962 hybrid contribution -0.085 1.438 -0.415 1.499 sum 10.559 -11.024 6.938 16.768 Atomic orbital electron populations 1.70023 1.07176 1.27863 1.51978 1.25743 0.95671 1.02410 0.95079 0.85645 0.78423 0.79130 0.78650 1.19414 1.20283 1.20505 1.21899 0.93209 0.92360 1.49573 0.93563 1.18493 0.86331 0.82671 0.95032 1.45515 1.51508 1.39668 0.99291 1.19125 0.89789 0.90904 0.89147 1.24119 1.00862 0.95024 0.92454 1.68296 1.12383 1.26749 1.08965 1.22453 0.91612 0.94892 0.99037 1.22452 0.98548 0.93792 0.90849 1.68395 1.15072 1.26196 1.10294 1.20467 0.91785 1.00527 0.97609 1.21609 1.03835 0.96962 0.92741 1.21599 0.93802 0.95529 1.03964 1.20431 0.98165 1.01302 0.89747 1.21463 0.91641 0.98661 0.87741 1.23150 1.03944 0.91651 1.02132 1.23371 0.99401 0.99746 1.02009 0.92607 0.96071 0.99181 0.80857 0.88890 0.91273 0.88040 0.91844 0.91109 0.87611 0.88819 0.89114 0.85295 0.91778 0.85370 0.87110 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.53 -31.12 9.39 25.60 0.24 -30.88 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.30 15.93 5.48 85.63 0.47 16.39 16 10 N -0.63 -28.55 2.81 -684.05 -1.92 -30.47 16 11 C 0.34 14.62 4.49 133.13 0.60 15.22 16 12 C 0.04 1.54 11.18 84.99 0.95 2.49 16 13 N -0.45 -15.73 10.32 -182.96 -1.89 -17.62 16 14 C 0.06 1.82 6.61 42.22 0.28 2.10 16 15 C 0.08 2.88 6.60 42.22 0.28 3.16 16 16 N -0.48 -20.55 10.36 -180.96 -1.87 -22.43 16 17 C -0.07 -1.71 5.92 29.74 0.18 -1.53 16 18 C -0.11 -1.99 5.98 30.61 0.18 -1.81 16 19 C -0.11 -1.65 5.98 30.62 0.18 -1.47 16 20 C -0.06 -1.20 5.92 29.74 0.18 -1.03 16 21 C 0.11 4.14 6.57 44.99 0.30 4.44 16 22 C -0.17 -5.25 9.83 30.60 0.30 -4.95 16 23 C -0.21 -7.15 10.36 30.60 0.32 -6.84 16 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 25 H 0.02 1.17 8.07 -2.39 -0.02 1.16 16 26 H -0.01 -0.58 8.05 -2.39 -0.02 -0.60 16 27 H 0.17 5.99 8.06 -2.91 -0.02 5.96 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 33 H 0.11 0.97 8.14 -2.38 -0.02 0.96 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.13 4.46 8.14 -2.38 -0.02 4.44 16 37 H 0.06 2.18 7.06 -2.39 -0.02 2.17 16 38 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -69.87 332.35 2.55 -67.32 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.02 Total: 14.60 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 4.91 Total: -3.70 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -5.40 Total: -126.31 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.87 2.55 -67.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310797253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.222 kcal (2) G-P(sol) polarization free energy of solvation -69.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds