Wall clock time and date at job start Mon Mar 30 2020 07:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.56282 * 2 1 4 4 C 1.52999 * 117.50113 * 214.31376 * 2 1 3 5 5 H 1.09002 * 117.50279 * 145.01696 * 4 2 1 6 6 C 1.50705 * 117.49587 * 359.97438 * 4 2 1 7 7 O 1.21280 * 120.00197 * 291.37737 * 6 4 2 8 8 N 1.34772 * 119.99998 * 111.37835 * 6 4 2 9 9 C 1.46502 * 120.00020 * 359.97438 * 8 6 4 10 10 C 1.46503 * 120.00073 * 179.97438 * 8 6 4 11 11 C 1.50696 * 109.47004 * 89.99850 * 10 8 6 12 12 H 1.08000 * 120.00549 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99860 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00329 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99971 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47217 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47145 * 120.00129 * 15 13 11 18 18 H 1.48504 * 109.47103 * 240.00401 * 15 13 11 19 19 C 1.52996 * 117.49961 * 145.69139 * 2 1 3 20 20 H 1.09001 * 117.51909 * 0.02562 * 19 2 1 21 21 C 1.50706 * 117.49821 * 214.97670 * 19 2 1 22 22 C 1.38238 * 119.99758 * 171.37711 * 21 19 2 23 23 C 1.38234 * 119.99693 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.00240 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00194 * 351.40037 * 21 19 2 27 27 H 1.08999 * 109.47013 * 274.31171 * 1 2 3 28 28 H 1.09007 * 109.47063 * 34.30725 * 1 2 3 29 29 H 1.09000 * 109.46877 * 154.30830 * 1 2 3 30 30 H 1.09001 * 109.47084 * 90.00565 * 9 8 6 31 31 H 1.09006 * 109.47453 * 209.99865 * 9 8 6 32 32 H 1.08993 * 109.47216 * 330.00004 * 9 8 6 33 33 H 1.09001 * 109.47087 * 209.99742 * 10 8 6 34 34 H 1.09002 * 109.47199 * 330.00086 * 10 8 6 35 35 H 0.96992 * 120.00374 * 180.02562 * 14 13 11 36 36 H 1.08005 * 120.00103 * 0.02562 * 22 21 19 37 37 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 38 38 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 40 40 H 1.07999 * 119.99990 * 359.97438 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7650 5 1 3.1715 -0.8751 -1.2684 6 6 1.3720 -2.1409 -1.4604 7 8 0.7109 -2.9211 -0.8085 8 7 1.3335 -2.1860 -2.8069 9 6 2.1316 -1.2431 -3.5945 10 6 0.4936 -3.1778 -3.4829 11 6 -0.8787 -2.5998 -3.7144 12 1 -1.1028 -1.5941 -3.3908 13 6 -1.8480 -3.3546 -4.3403 14 7 -1.5752 -4.5791 -4.7349 15 14 -3.5490 -2.6379 -4.6280 16 1 -3.5990 -1.2527 -4.0953 17 1 -3.8381 -2.6184 -6.0845 18 1 -4.5618 -3.4728 -3.9333 19 6 2.2364 -1.1210 0.7649 20 1 1.6115 -1.8589 1.2680 21 6 3.5293 -0.7811 1.4607 22 6 4.1186 -1.6983 2.3108 23 6 5.3047 -1.3867 2.9486 24 6 5.9014 -0.1579 2.7368 25 6 5.3091 0.7615 1.8914 26 6 4.1257 0.4479 1.2493 27 1 -0.3633 0.0773 1.0247 28 1 -0.3633 0.8489 -0.5793 29 1 -0.3633 -0.9261 -0.4455 30 1 3.1139 -1.6734 -3.7900 31 1 1.6282 -1.0423 -4.5402 32 1 2.2467 -0.3122 -3.0393 33 1 0.9427 -3.4423 -4.4402 34 1 0.4122 -4.0694 -2.8611 35 1 -2.2569 -5.1100 -5.1756 36 1 3.6526 -2.6585 2.4760 37 1 5.7649 -2.1031 3.6130 38 1 6.8279 0.0856 3.2355 39 1 5.7729 1.7233 1.7293 40 1 3.6654 1.1644 0.5851 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360219693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:11 Heat of formation + Delta-G solvation = -8.646008 kcal Electronic energy + Delta-G solvation = -20592.888133 eV Core-core repulsion = 17565.350924 eV Total energy + Delta-G solvation = -3027.537209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44899 -39.98415 -37.78319 -36.49401 -34.70996 -32.03473 -31.70341 -30.24315 -29.08826 -27.38440 -26.03300 -24.29379 -23.57704 -22.44813 -20.97744 -19.53696 -18.69978 -18.36420 -17.47039 -17.11239 -16.47225 -16.20770 -15.92343 -15.73300 -15.18621 -14.65569 -14.40929 -14.21714 -13.99799 -13.84899 -13.60579 -13.48218 -13.38912 -13.23568 -13.07596 -12.80380 -12.59944 -12.52076 -12.22472 -12.08919 -11.85859 -11.69217 -11.46606 -11.01102 -10.66478 -10.59342 -9.77942 -9.46214 -9.41267 -8.23602 -6.38549 0.41014 0.54355 1.35149 1.37579 1.49485 1.66519 2.26437 2.42243 2.72568 3.05721 3.08988 3.46551 3.72210 3.79034 3.98072 4.10097 4.19310 4.21553 4.31222 4.43711 4.46692 4.63519 4.68349 4.69786 4.75860 4.83936 4.90555 4.96303 5.02625 5.09213 5.14377 5.20660 5.22363 5.38593 5.56253 5.63002 5.66799 5.76844 5.83330 6.04540 6.15752 6.68722 6.77710 7.26947 7.47384 8.83876 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033480 B = 0.003910 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.129256 B = 7160.263017 C = 7297.322890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.153 0.847 4 C -0.173 4.173 5 H 0.147 0.853 6 C 0.528 3.472 7 O -0.595 6.595 8 N -0.607 5.607 9 C 0.079 3.921 10 C 0.259 3.741 11 C -0.539 4.539 12 H 0.054 0.946 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.268 1.268 18 H -0.282 1.282 19 C -0.087 4.087 20 H 0.094 0.906 21 C -0.060 4.060 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.119 4.119 26 C -0.124 4.124 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.023 0.977 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.096 14.770 11.378 23.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.171 0.829 4 C -0.194 4.194 5 H 0.164 0.836 6 C 0.317 3.683 7 O -0.477 6.477 8 N -0.338 5.338 9 C -0.063 4.063 10 C 0.138 3.862 11 C -0.577 4.577 12 H 0.073 0.927 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.793 3.207 16 H -0.189 1.189 17 H -0.193 1.193 18 H -0.208 1.208 19 C -0.106 4.106 20 H 0.112 0.888 21 C -0.060 4.060 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.137 4.137 26 C -0.141 4.141 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.692 14.211 11.569 23.487 hybrid contribution -1.223 -0.770 -0.458 1.516 sum 13.469 13.441 11.111 22.035 Atomic orbital electron populations 1.21489 0.93349 1.01887 1.02615 1.22639 0.94967 0.94407 0.99184 0.82942 1.22525 1.02030 1.00555 0.94315 0.83553 1.20205 0.81642 0.84280 0.82160 1.90615 1.46750 1.44406 1.65971 1.48085 1.44808 1.35075 1.05785 1.21919 0.94820 0.92861 0.96681 1.18766 0.89318 0.87167 0.90980 1.21705 0.97469 1.00467 1.38095 0.92737 1.25890 1.03188 0.95107 0.95111 1.70060 1.35883 1.10175 1.40855 0.85353 0.78547 0.78574 0.78259 1.18917 1.19326 1.20800 1.21060 0.96752 1.01998 0.90761 0.88775 1.19132 0.94172 0.95290 0.97439 1.21167 0.96887 0.99266 0.97836 1.21383 0.95100 0.97992 0.99758 1.21515 1.00749 0.93616 0.98773 1.21479 0.95186 1.00530 0.96455 1.21292 0.96331 0.95860 1.00647 0.90882 0.90411 0.95267 0.91427 0.91382 0.88811 0.95885 0.98679 0.92402 0.86899 0.84426 0.83660 0.83325 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 10.03 71.98 0.72 -3.38 16 2 C -0.09 -2.39 5.73 -10.80 -0.06 -2.45 16 3 H 0.15 2.63 6.18 -2.38 -0.01 2.61 16 4 C -0.17 -5.29 4.43 -11.54 -0.05 -5.34 16 5 H 0.15 3.58 7.27 -2.39 -0.02 3.57 16 6 C 0.53 23.11 6.09 87.66 0.53 23.65 16 7 O -0.60 -32.19 14.89 -3.03 -0.05 -32.23 16 8 N -0.61 -26.96 2.86 -851.12 -2.43 -29.40 16 9 C 0.08 2.48 10.01 127.77 1.28 3.76 16 10 C 0.26 14.48 5.16 85.63 0.44 14.92 16 11 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 12 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 13 C 0.01 0.34 5.46 84.66 0.46 0.80 16 14 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 15 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 C -0.09 -2.50 5.27 -11.54 -0.06 -2.56 16 20 H 0.09 3.29 7.67 -2.39 -0.02 3.27 16 21 C -0.06 -1.44 5.61 -19.86 -0.11 -1.55 16 22 C -0.13 -3.14 9.74 22.27 0.22 -2.92 16 23 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 24 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 25 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 26 C -0.12 -2.26 9.30 22.27 0.21 -2.06 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 29 H 0.03 1.17 5.70 -2.39 -0.01 1.16 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.20 8.07 -2.38 -0.02 2.18 16 32 H 0.09 2.27 6.64 -2.39 -0.02 2.25 16 33 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 34 H 0.00 -0.32 7.42 -2.39 -0.02 -0.34 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.11 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 40 H 0.14 1.98 6.02 -2.91 -0.02 1.96 16 Total: -1.00 -76.51 334.06 5.34 -71.16 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.02 Total: 13.93 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 4.49 Total: -13.99 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -2.15 Total: -86.38 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.05 Total: -32.23 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -76.51 5.34 -71.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360219693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.515 kcal (2) G-P(sol) polarization free energy of solvation -76.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds