Wall clock time and date at job start Mon Mar 30 2020 08:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47110 * 119.99984 * 2 1 3 5 5 N 1.46500 * 109.47555 * 65.67627 * 4 2 1 6 6 C 1.46500 * 119.99983 * 83.63588 * 5 4 2 7 7 C 1.50698 * 109.47301 * 274.35140 * 6 5 4 8 8 H 1.07995 * 119.99841 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00254 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99778 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00507 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47188 * 60.00041 * 11 9 7 13 13 H 1.48503 * 109.47547 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47212 * 300.00512 * 11 9 7 15 15 S 1.65602 * 120.00149 * 263.64081 * 5 4 2 16 16 O 1.42099 * 102.99878 * 160.78425 * 15 5 4 17 17 C 1.81396 * 102.99891 * 274.63778 * 15 5 4 18 18 C 1.54891 * 110.75554 * 181.79425 * 17 15 5 19 19 C 1.54269 * 104.31416 * 156.32276 * 18 17 15 20 20 C 1.53875 * 106.59692 * 336.32702 * 19 18 17 21 21 C 1.54268 * 106.59799 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.47153 * 63.76438 * 1 2 3 23 23 H 1.08999 * 109.46711 * 183.75753 * 1 2 3 24 24 H 1.08994 * 109.47261 * 303.75488 * 1 2 3 25 25 H 1.08998 * 109.47175 * 239.99979 * 2 1 3 26 26 H 1.08996 * 109.46599 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46767 * 300.00217 * 3 2 1 28 28 H 1.08998 * 109.47199 * 59.99994 * 3 2 1 29 29 H 1.09001 * 109.47591 * 305.67457 * 4 2 1 30 30 H 1.08998 * 109.47161 * 185.67915 * 4 2 1 31 31 H 1.09003 * 109.46850 * 34.35695 * 6 5 4 32 32 H 1.08995 * 109.46931 * 154.35096 * 6 5 4 33 33 H 0.97007 * 119.99989 * 179.97438 * 10 9 7 34 34 H 1.09004 * 110.81674 * 58.46255 * 17 15 5 35 35 H 1.09009 * 110.48182 * 37.58016 * 18 17 15 36 36 H 1.09001 * 110.49021 * 275.07147 * 18 17 15 37 37 H 1.08996 * 110.03057 * 95.61028 * 19 18 17 38 38 H 1.08993 * 110.03323 * 216.99683 * 19 18 17 39 39 H 1.09000 * 110.03026 * 119.28082 * 20 19 18 40 40 H 1.08996 * 110.03570 * 240.71548 * 20 19 18 41 41 H 1.09002 * 110.48737 * 142.29044 * 21 20 19 42 42 H 1.09002 * 110.48548 * 264.79721 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6665 -2.1362 1.1830 6 6 2.5006 -3.0798 0.4344 7 6 2.0941 -3.0679 -1.0167 8 1 1.2947 -2.4219 -1.3482 9 6 2.7434 -3.8811 -1.9212 10 7 3.7172 -4.6674 -1.5174 11 14 2.2401 -3.8659 -3.7199 12 1 2.4198 -2.4993 -4.2728 13 1 3.0856 -4.8224 -4.4787 14 1 0.8145 -4.2642 -3.8384 15 16 0.3013 -2.6693 1.9541 16 8 0.0309 -3.9053 1.3073 17 6 0.8836 -2.9851 3.6428 18 6 -0.2621 -3.5434 4.5230 19 6 0.4613 -4.3079 5.6509 20 6 1.8489 -4.6875 5.1047 21 6 1.9200 -4.1409 3.6639 22 1 -0.3633 0.4543 -0.9218 23 1 -0.3633 -1.0255 0.0673 24 1 -0.3633 0.5710 0.8544 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.5961 -0.2695 2.1363 30 1 3.1253 -0.6340 1.3015 31 1 3.5471 -2.7874 0.5211 32 1 2.3687 -4.0826 0.8405 33 1 4.1739 -5.2399 -2.1537 34 1 1.3035 -2.0808 4.0832 35 1 -0.8914 -4.2208 3.9455 36 1 -0.8580 -2.7291 4.9353 37 1 0.5670 -3.6685 6.5272 38 1 -0.0974 -5.2071 5.9103 39 1 2.6280 -4.2321 5.7161 40 1 1.9641 -5.7713 5.0986 41 1 2.9187 -3.7607 3.4489 42 1 1.6456 -4.9157 2.9480 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385720463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:23 Heat of formation + Delta-G solvation = -63.700610 kcal Electronic energy + Delta-G solvation = -20518.554312 eV Core-core repulsion = 17624.073708 eV Total energy + Delta-G solvation = -2894.480604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -37.37499 -36.77996 -34.86904 -33.36353 -31.86807 -28.46225 -28.38302 -27.24631 -26.77595 -24.61675 -21.98268 -20.39975 -20.06291 -19.54003 -17.16242 -16.45042 -16.12601 -15.25161 -15.12839 -14.68549 -14.14338 -13.90275 -13.78618 -13.33862 -13.09981 -12.45841 -12.28801 -12.06349 -11.83741 -11.76631 -11.36179 -11.14099 -11.08175 -11.04723 -10.84644 -10.79307 -10.67010 -10.53927 -10.39673 -10.37159 -10.26667 -10.19974 -9.89617 -9.51358 -9.24782 -8.29163 -7.91845 -7.17264 -5.89805 -3.91571 2.73603 3.37243 3.38544 3.42152 3.46040 4.53593 4.68509 4.84437 4.94939 5.10244 5.34651 5.40914 5.44803 5.52004 5.64040 5.67777 5.75533 5.78496 5.86929 5.95704 5.99046 6.11043 6.12913 6.15636 6.17263 6.26208 6.28640 6.31672 6.43916 6.49806 6.54677 6.68131 6.72626 6.76283 7.13162 7.47729 7.72758 7.97136 8.12765 8.45289 9.10374 9.70958 11.18452 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.007327 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.602726 B = 3820.611049 C = 4837.684945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C -0.141 4.141 4 C 0.152 3.848 5 N -0.868 5.868 6 C 0.257 3.743 7 C -0.507 4.507 8 H 0.059 0.941 9 C 0.056 3.944 10 N -0.901 5.901 11 Si 0.891 3.109 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.278 1.278 15 S 1.473 4.527 16 O -0.857 6.857 17 C -0.479 4.479 18 C -0.094 4.094 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.102 4.102 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.016 0.984 32 H 0.030 0.970 33 H 0.260 0.740 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.717 10.555 11.692 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.199 4.199 4 C 0.024 3.976 5 N -0.698 5.698 6 C 0.133 3.867 7 C -0.547 4.547 8 H 0.078 0.922 9 C -0.145 4.145 10 N -0.541 5.541 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.203 1.203 15 S 1.571 4.429 16 O -0.842 6.842 17 C -0.591 4.591 18 C -0.133 4.133 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.140 4.140 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.387 10.230 11.208 16.877 hybrid contribution 1.579 -1.661 -0.837 2.440 sum -5.808 8.569 10.370 14.653 Atomic orbital electron populations 1.21823 0.96101 1.01223 1.01027 1.21693 0.95664 0.95222 1.01878 1.21772 1.00810 0.96467 1.00899 1.20978 0.99549 0.81432 0.95621 1.55068 1.42007 1.11529 1.61233 1.18974 0.89318 0.87662 0.90717 1.21501 1.17519 1.22545 0.93146 0.92239 1.24955 0.95269 0.95523 0.98745 1.69932 1.23566 1.25938 1.34668 0.86684 0.78569 0.77618 0.85253 1.20347 1.21461 1.20344 1.68418 0.91271 1.01063 0.82175 1.93166 1.77171 1.46627 1.67254 1.29814 1.02621 1.02834 1.23814 1.21949 0.96297 0.99006 0.96007 1.22101 0.96123 0.99459 0.97957 1.22128 0.96768 1.00157 0.96932 1.22237 0.98452 0.96883 0.96445 0.93088 0.92938 0.92984 0.88545 0.92997 0.93202 0.93273 0.92404 0.92325 0.96637 0.95220 0.93079 0.87722 0.91889 0.91276 0.92247 0.92430 0.92483 0.92549 0.91863 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.92 37.16 0.33 -1.61 16 2 C -0.12 -1.89 2.85 -90.62 -0.26 -2.15 16 3 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 4 C 0.15 2.36 5.18 -4.04 -0.02 2.34 16 5 N -0.87 -17.06 2.37 -115.67 -0.27 -17.33 16 6 C 0.26 6.74 5.01 -5.19 -0.03 6.71 16 7 C -0.51 -14.47 8.31 -34.44 -0.29 -14.75 16 8 H 0.06 1.66 6.83 -52.49 -0.36 1.30 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.90 -27.91 13.29 55.43 0.74 -27.18 16 11 Si 0.89 22.65 29.54 -169.99 -5.02 17.63 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 15 S 1.47 25.53 11.45 -107.50 -1.23 24.30 16 16 O -0.86 -21.06 15.87 -35.23 -0.56 -21.62 16 17 C -0.48 -7.22 3.58 -24.54 -0.09 -7.31 16 18 C -0.09 -1.23 6.27 -25.07 -0.16 -1.39 16 19 C -0.12 -1.50 6.80 -25.61 -0.17 -1.67 16 20 C -0.12 -1.78 6.80 -25.61 -0.17 -1.96 16 21 C -0.10 -1.83 6.10 -24.87 -0.15 -1.98 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.80 6.24 -51.93 -0.32 0.48 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.10 1.88 6.24 -51.93 -0.32 1.55 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.66 7.98 -51.93 -0.41 0.25 16 30 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 31 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 32 H 0.03 0.89 7.12 -51.93 -0.37 0.52 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.06 0.91 8.04 -51.92 -0.42 0.49 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.51 7.38 -51.93 -0.38 1.13 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -35.49 340.18 -9.61 -45.10 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -7.63 Total: -2.43 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -0.76 Total: -23.60 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.46 Total: -44.51 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.56 Total: -21.62 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Atomic # 16 Polarization: 25.53 SS G_CDS: -1.23 Total: 24.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.49 -9.61 -45.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385720463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.601 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds