Wall clock time and date at job start Mon Mar 30 2020 08:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47110 * 119.99984 * 2 1 3 5 5 N 1.46500 * 109.47555 * 65.67627 * 4 2 1 6 6 C 1.46500 * 119.99983 * 83.63588 * 5 4 2 7 7 C 1.50698 * 109.47301 * 274.35140 * 6 5 4 8 8 H 1.07995 * 119.99841 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00254 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99778 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00507 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47188 * 60.00041 * 11 9 7 13 13 H 1.48503 * 109.47547 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47212 * 300.00512 * 11 9 7 15 15 S 1.65602 * 120.00149 * 263.64081 * 5 4 2 16 16 O 1.42099 * 102.99878 * 160.78425 * 15 5 4 17 17 C 1.81396 * 102.99891 * 274.63778 * 15 5 4 18 18 C 1.54891 * 110.75554 * 181.79425 * 17 15 5 19 19 C 1.54269 * 104.31416 * 156.32276 * 18 17 15 20 20 C 1.53875 * 106.59692 * 336.32702 * 19 18 17 21 21 C 1.54268 * 106.59799 * 359.97438 * 20 19 18 22 22 H 1.08996 * 109.47153 * 63.76438 * 1 2 3 23 23 H 1.08999 * 109.46711 * 183.75753 * 1 2 3 24 24 H 1.08994 * 109.47261 * 303.75488 * 1 2 3 25 25 H 1.08998 * 109.47175 * 239.99979 * 2 1 3 26 26 H 1.08996 * 109.46599 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46767 * 300.00217 * 3 2 1 28 28 H 1.08998 * 109.47199 * 59.99994 * 3 2 1 29 29 H 1.09001 * 109.47591 * 305.67457 * 4 2 1 30 30 H 1.08998 * 109.47161 * 185.67915 * 4 2 1 31 31 H 1.09003 * 109.46850 * 34.35695 * 6 5 4 32 32 H 1.08995 * 109.46931 * 154.35096 * 6 5 4 33 33 H 0.97007 * 119.99989 * 179.97438 * 10 9 7 34 34 H 1.09004 * 110.81674 * 58.46255 * 17 15 5 35 35 H 1.09009 * 110.48182 * 37.58016 * 18 17 15 36 36 H 1.09001 * 110.49021 * 275.07147 * 18 17 15 37 37 H 1.08996 * 110.03057 * 95.61028 * 19 18 17 38 38 H 1.08993 * 110.03323 * 216.99683 * 19 18 17 39 39 H 1.09000 * 110.03026 * 119.28082 * 20 19 18 40 40 H 1.08996 * 110.03570 * 240.71548 * 20 19 18 41 41 H 1.09002 * 110.48737 * 142.29044 * 21 20 19 42 42 H 1.09002 * 110.48548 * 264.79721 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6665 -2.1362 1.1830 6 6 2.5006 -3.0798 0.4344 7 6 2.0941 -3.0679 -1.0167 8 1 1.2947 -2.4219 -1.3482 9 6 2.7434 -3.8811 -1.9212 10 7 3.7172 -4.6674 -1.5174 11 14 2.2401 -3.8659 -3.7199 12 1 2.4198 -2.4993 -4.2728 13 1 3.0856 -4.8224 -4.4787 14 1 0.8145 -4.2642 -3.8384 15 16 0.3013 -2.6693 1.9541 16 8 0.0309 -3.9053 1.3073 17 6 0.8836 -2.9851 3.6428 18 6 -0.2621 -3.5434 4.5230 19 6 0.4613 -4.3079 5.6509 20 6 1.8489 -4.6875 5.1047 21 6 1.9200 -4.1409 3.6639 22 1 -0.3633 0.4543 -0.9218 23 1 -0.3633 -1.0255 0.0673 24 1 -0.3633 0.5710 0.8544 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.5961 -0.2695 2.1363 30 1 3.1253 -0.6340 1.3015 31 1 3.5471 -2.7874 0.5211 32 1 2.3687 -4.0826 0.8405 33 1 4.1739 -5.2399 -2.1537 34 1 1.3035 -2.0808 4.0832 35 1 -0.8914 -4.2208 3.9455 36 1 -0.8580 -2.7291 4.9353 37 1 0.5670 -3.6685 6.5272 38 1 -0.0974 -5.2071 5.9103 39 1 2.6280 -4.2321 5.7161 40 1 1.9641 -5.7713 5.0986 41 1 2.9187 -3.7607 3.4489 42 1 1.6456 -4.9157 2.9480 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385720463.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:14:22 Heat of formation + Delta-G solvation = -87.527227 kcal Electronic energy + Delta-G solvation = -20519.587512 eV Core-core repulsion = 17624.073708 eV Total energy + Delta-G solvation = -2895.513804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -38.58548 -38.18156 -36.63067 -35.20731 -33.73421 -29.66557 -29.61114 -29.19059 -27.78677 -26.22984 -23.92890 -21.70641 -21.21444 -20.76234 -18.69366 -18.54554 -17.60697 -16.75196 -16.57492 -16.46701 -15.64088 -15.31687 -15.11023 -14.61171 -14.36679 -14.29568 -13.76457 -13.49322 -13.29043 -13.19323 -12.95596 -12.76131 -12.64174 -12.44401 -12.26364 -12.18983 -12.09934 -12.07206 -11.96900 -11.74166 -11.63139 -11.46585 -11.31425 -11.17361 -10.96001 -10.58335 -9.62388 -8.76677 -8.15085 -6.27274 1.27308 1.31515 1.35286 1.41886 1.91137 2.37592 3.11397 3.22320 3.62320 3.75370 3.97713 4.11897 4.30775 4.39856 4.45788 4.50836 4.52854 4.61613 4.73036 4.83949 4.90829 4.93160 5.02152 5.04889 5.06097 5.12104 5.16009 5.19937 5.22541 5.27295 5.29123 5.32388 5.45366 5.51487 5.54460 5.70104 5.77981 5.93177 6.19454 6.34141 6.84527 7.39856 8.90117 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.007327 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.602726 B = 3820.611049 C = 4837.684945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C -0.133 4.133 4 C 0.143 3.857 5 N -0.876 5.876 6 C 0.283 3.717 7 C -0.512 4.512 8 H 0.062 0.938 9 C -0.007 4.007 10 N -0.941 5.941 11 Si 0.957 3.043 12 H -0.258 1.258 13 H -0.284 1.284 14 H -0.279 1.279 15 S 1.529 4.471 16 O -0.935 6.935 17 C -0.468 4.468 18 C -0.096 4.096 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.109 4.109 22 H 0.053 0.947 23 H 0.027 0.973 24 H 0.097 0.903 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.047 0.953 31 H -0.010 1.010 32 H -0.019 1.019 33 H 0.260 0.740 34 H 0.145 0.855 35 H 0.041 0.959 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 13.688 13.768 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.191 4.191 4 C 0.017 3.983 5 N -0.704 5.704 6 C 0.156 3.844 7 C -0.552 4.552 8 H 0.080 0.920 9 C -0.204 4.204 10 N -0.583 5.583 11 Si 0.782 3.218 12 H -0.182 1.182 13 H -0.209 1.209 14 H -0.205 1.205 15 S 1.631 4.369 16 O -0.922 6.922 17 C -0.584 4.584 18 C -0.135 4.135 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.148 4.148 22 H 0.072 0.928 23 H 0.046 0.954 24 H 0.116 0.884 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.065 0.935 31 H 0.008 0.992 32 H -0.001 1.001 33 H 0.069 0.931 34 H 0.163 0.837 35 H 0.060 0.940 36 H 0.136 0.864 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -9.034 13.411 13.255 20.908 hybrid contribution 2.103 -2.621 -1.352 3.622 sum -6.932 10.790 11.903 17.497 Atomic orbital electron populations 1.21867 0.94493 1.00558 1.03357 1.21624 0.97110 0.96700 0.99208 1.21703 1.00346 0.94256 1.02820 1.21356 0.99603 0.79034 0.98347 1.54879 1.41462 1.12629 1.61451 1.18279 0.88846 0.86816 0.90430 1.21881 1.16998 1.21907 0.94418 0.92015 1.25914 0.95417 0.95331 1.03722 1.70085 1.24991 1.27010 1.36187 0.85623 0.77852 0.78599 0.79706 1.18243 1.20892 1.20453 1.67242 0.89352 0.98344 0.81918 1.93042 1.79083 1.49843 1.70186 1.29682 1.02913 1.03516 1.22246 1.22082 0.95597 1.00246 0.95544 1.22129 0.94166 1.00393 0.98581 1.22161 0.99345 0.99735 0.94690 1.22189 0.98220 0.96794 0.97589 0.92764 0.95354 0.88411 0.93955 0.93745 0.92748 0.89842 0.86629 0.93464 0.99246 1.00115 0.93136 0.83679 0.94045 0.86446 0.88951 0.91824 0.90514 0.93461 0.93693 0.96733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.92 71.98 0.64 -2.93 16 2 C -0.13 -3.68 2.85 -10.79 -0.03 -3.71 16 3 C -0.13 -2.85 9.19 71.98 0.66 -2.19 16 4 C 0.14 4.21 5.18 86.38 0.45 4.66 16 5 N -0.88 -35.15 2.37 -519.86 -1.23 -36.38 16 6 C 0.28 15.82 5.01 85.63 0.43 16.25 16 7 C -0.51 -30.74 8.31 25.60 0.21 -30.53 16 8 H 0.06 3.59 6.83 -2.91 -0.02 3.57 16 9 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 10 N -0.94 -61.40 13.29 21.45 0.28 -61.12 16 11 Si 0.96 48.04 29.54 68.60 2.03 50.06 16 12 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 15 S 1.53 52.88 11.45 -56.49 -0.65 52.24 16 16 O -0.94 -48.55 15.87 -148.98 -2.36 -50.91 16 17 C -0.47 -13.21 3.58 32.01 0.11 -13.09 16 18 C -0.10 -2.21 6.27 31.67 0.20 -2.01 16 19 C -0.11 -2.51 6.80 31.32 0.21 -2.30 16 20 C -0.12 -3.41 6.80 31.32 0.21 -3.20 16 21 C -0.11 -4.04 6.10 31.80 0.19 -3.85 16 22 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.03 0.82 6.24 -2.39 -0.01 0.81 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.69 6.24 -2.39 -0.01 1.68 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.12 2.09 7.98 -2.39 -0.02 2.07 16 30 H 0.05 1.50 8.02 -2.39 -0.02 1.49 16 31 H -0.01 -0.62 8.01 -2.39 -0.02 -0.64 16 32 H -0.02 -1.25 7.12 -2.39 -0.02 -1.27 16 33 H 0.26 16.07 8.31 -92.70 -0.77 15.30 16 34 H 0.15 3.04 8.14 -2.38 -0.02 3.02 16 35 H 0.04 1.14 8.04 -2.38 -0.02 1.12 16 36 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.01 0.66 7.38 -2.39 -0.02 0.65 16 Total: -1.00 -86.31 340.18 2.78 -83.52 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.96 Total: 5.45 kcal Atomic # 6 Polarization: -46.63 SS G_CDS: 3.76 Total: -42.87 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -0.95 Total: -97.50 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -2.36 Total: -50.91 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Atomic # 16 Polarization: 52.88 SS G_CDS: -0.65 Total: 52.24 kcal Total: -86.31 2.78 -83.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385720463.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.004 kcal (2) G-P(sol) polarization free energy of solvation -86.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds