Wall clock time and date at job start Mon Mar 30 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.50701 * 109.47358 * 119.99988 * 2 1 3 5 5 H 1.07992 * 120.00279 * 119.99569 * 4 2 1 6 6 C 1.37880 * 119.99601 * 300.27343 * 4 2 1 7 7 N 1.31509 * 120.00034 * 359.72943 * 6 4 2 8 8 Si 1.86797 * 119.99702 * 179.72020 * 6 4 2 9 9 H 1.48508 * 109.46711 * 90.00318 * 8 6 4 10 10 H 1.48500 * 109.47190 * 209.99946 * 8 6 4 11 11 H 1.48494 * 109.47423 * 330.00580 * 8 6 4 12 12 C 1.50705 * 109.47059 * 239.99990 * 2 1 3 13 13 O 1.21287 * 119.99655 * 216.44617 * 12 2 1 14 14 N 1.34773 * 119.99868 * 36.43898 * 12 2 1 15 15 C 1.40176 * 120.55211 * 26.21632 * 14 12 2 16 16 C 1.39039 * 119.14670 * 13.33081 * 15 14 12 17 17 C 1.38036 * 120.03303 * 180.14528 * 16 15 14 18 18 C 1.38307 * 119.91097 * 0.07733 * 17 16 15 19 19 C 1.38130 * 120.14774 * 359.87727 * 18 17 16 20 20 C 1.38499 * 120.30238 * 0.02562 * 19 18 17 21 21 C 1.50598 * 118.93039 * 180.37223 * 20 19 18 22 22 C 1.52848 * 110.49696 * 200.54365 * 21 20 19 23 23 C 1.46929 * 120.55016 * 205.92880 * 14 12 2 24 24 H 1.09004 * 109.79779 * 255.02909 * 23 14 12 25 25 C 1.53005 * 109.79061 * 15.87934 * 23 14 12 26 26 H 1.09001 * 109.46897 * 269.27695 * 1 2 3 27 27 H 1.08998 * 109.47130 * 29.27825 * 1 2 3 28 28 H 1.08997 * 109.47100 * 149.27768 * 1 2 3 29 29 H 0.97003 * 119.99964 * 180.02562 * 7 6 4 30 30 H 1.07991 * 119.98652 * 0.17404 * 16 15 14 31 31 H 1.07997 * 120.04957 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.93124 * 179.89622 * 18 17 16 33 33 H 1.07997 * 119.84651 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.26571 * 320.80080 * 21 20 19 35 35 H 1.08998 * 109.27266 * 80.30788 * 21 20 19 36 36 H 1.09005 * 109.57489 * 68.34812 * 22 21 20 37 37 H 1.09003 * 109.57711 * 188.60482 * 22 21 20 38 38 H 1.08995 * 109.47063 * 45.16474 * 25 23 14 39 39 H 1.09005 * 109.46548 * 165.16454 * 25 23 14 40 40 H 1.08994 * 109.47156 * 285.15818 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6946 -0.2426 2.4827 7 7 0.9385 0.8266 2.6033 8 14 2.3109 -1.1277 4.0079 9 1 3.6178 -0.5543 4.4187 10 1 1.3286 -0.9594 5.1087 11 1 2.4765 -2.5727 3.7087 12 6 2.0323 -0.7104 -1.2305 13 8 3.0311 -1.3959 -1.1697 14 7 1.3716 -0.5842 -2.3984 15 6 0.5977 0.5549 -2.6597 16 6 0.7346 1.6694 -1.8396 17 6 -0.0207 2.7998 -2.0784 18 6 -0.9148 2.8217 -3.1334 19 6 -1.0516 1.7160 -3.9499 20 6 -0.2961 0.5785 -3.7183 21 6 -0.4640 -0.6062 -4.6328 22 6 0.0327 -1.8818 -3.9528 23 6 1.4557 -1.6354 -3.4214 24 1 2.1055 -1.3091 -4.2336 25 6 2.0070 -2.9203 -2.7999 26 1 -0.3633 -0.0130 1.0276 27 1 -0.3633 0.8964 -0.5026 28 1 -0.3633 -0.8834 -0.5250 29 1 0.7012 1.1560 3.4843 30 1 1.4324 1.6507 -1.0157 31 1 0.0857 3.6657 -1.4419 32 1 -1.5071 3.7054 -3.3196 33 1 -1.7510 1.7385 -4.7726 34 1 -1.5185 -0.7199 -4.8842 35 1 0.1076 -0.4398 -5.5458 36 1 -0.6305 -2.1371 -3.1263 37 1 0.0478 -2.6984 -4.6746 38 1 1.5098 -3.1057 -1.8478 39 1 1.8247 -3.7572 -3.4741 40 1 3.0791 -2.8133 -2.6352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596677643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:20 Heat of formation + Delta-G solvation = 15.049461 kcal Electronic energy + Delta-G solvation = -22200.095213 eV Core-core repulsion = 19173.585516 eV Total energy + Delta-G solvation = -3026.509696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.91979 -38.17965 -36.30709 -34.43970 -33.21209 -31.57381 -30.41109 -29.26518 -27.53072 -25.20320 -24.31964 -23.23817 -22.00604 -21.57103 -20.20755 -18.49661 -16.92073 -16.44361 -16.05341 -15.27750 -15.16452 -14.55203 -14.42246 -14.06723 -13.85548 -13.31826 -13.12693 -12.94946 -12.66831 -12.35578 -12.10631 -11.82235 -11.58222 -11.28693 -11.09956 -11.07398 -10.91585 -10.83303 -10.72293 -10.45150 -10.44286 -10.14136 -10.06719 -9.54403 -8.93609 -8.63473 -8.36496 -8.14806 -7.20007 -6.08458 -4.13074 1.72901 1.79844 3.29330 3.32737 3.36915 3.43316 3.46158 4.20723 4.41902 4.80051 4.91753 5.05244 5.20759 5.25078 5.37774 5.40361 5.50098 5.57156 5.71942 5.79391 5.82617 5.89001 5.98069 6.00568 6.12623 6.27707 6.37018 6.40097 6.52239 6.61978 6.70439 6.79778 6.86835 6.90633 7.01806 7.19377 7.38654 7.48225 7.74872 7.89379 8.08571 8.28932 8.87943 8.95558 9.51262 10.98414 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.007261 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.162654 B = 3855.316787 C = 4887.587755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.025 3.975 3 H 0.070 0.930 4 C -0.505 4.505 5 H 0.070 0.930 6 C 0.060 3.940 7 N -0.889 5.889 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.528 3.472 13 O -0.513 6.513 14 N -0.574 5.574 15 C 0.185 3.815 16 C -0.156 4.156 17 C -0.101 4.101 18 C -0.153 4.153 19 C -0.103 4.103 20 C -0.133 4.133 21 C -0.071 4.071 22 C -0.130 4.130 23 C 0.140 3.860 24 H 0.070 0.930 25 C -0.153 4.153 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.019 0.981 29 H 0.262 0.738 30 H 0.161 0.839 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 0.429 -13.409 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.005 3.995 3 H 0.086 0.914 4 C -0.543 4.543 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.387 6.387 14 N -0.299 5.299 15 C 0.089 3.911 16 C -0.176 4.176 17 C -0.119 4.119 18 C -0.173 4.173 19 C -0.121 4.121 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.168 4.168 23 C 0.037 3.963 24 H 0.088 0.912 25 C -0.211 4.211 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.178 0.822 31 H 0.140 0.860 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.265 0.032 -13.173 13.847 hybrid contribution 0.078 -0.343 0.838 0.909 sum -4.187 -0.311 -12.335 13.030 Atomic orbital electron populations 1.22165 0.96319 0.97986 1.03440 1.19318 0.94623 0.96537 0.89037 0.91382 1.21079 1.31084 1.13218 0.88917 0.91210 1.24928 0.94990 0.95161 0.99040 1.69944 1.36278 1.22765 1.23727 0.86459 0.78534 0.80191 0.82092 1.20544 1.21216 1.19824 1.22177 0.81461 0.80742 0.83537 1.90519 1.23223 1.39894 1.85017 1.46226 1.48072 1.18433 1.17217 1.17520 0.91805 0.86609 0.95178 1.22143 1.02775 0.91688 1.00967 1.20928 0.96059 0.97686 0.97257 1.20902 1.00819 0.98492 0.97046 1.20709 0.99217 0.92697 0.99517 1.19311 0.98793 0.96808 0.98735 1.20327 1.01474 0.92004 0.97037 1.22019 0.96416 0.97540 1.00860 1.21371 0.96190 0.88393 0.90338 0.91195 1.22117 1.03819 0.94497 1.00639 0.89658 0.93532 0.96185 0.92817 0.82241 0.85974 0.86758 0.86637 0.90773 0.91177 0.90903 0.90484 0.91974 0.92604 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 7.71 37.16 0.29 -3.04 16 2 C 0.02 0.62 1.74 -92.92 -0.16 0.45 16 3 H 0.07 1.76 5.47 -51.93 -0.28 1.47 16 4 C -0.50 -14.05 8.33 -34.44 -0.29 -14.34 16 5 H 0.07 2.03 7.00 -52.49 -0.37 1.67 16 6 C 0.06 1.65 5.07 -17.82 -0.09 1.56 16 7 N -0.89 -24.51 11.55 55.43 0.64 -23.87 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.53 12.17 5.67 -10.98 -0.06 12.10 16 13 O -0.51 -12.85 12.97 5.55 0.07 -12.78 16 14 N -0.57 -11.07 2.66 -105.56 -0.28 -11.35 16 15 C 0.18 3.34 5.09 -83.62 -0.43 2.91 16 16 C -0.16 -2.89 5.79 -39.36 -0.23 -3.12 16 17 C -0.10 -1.60 9.85 -39.63 -0.39 -1.99 16 18 C -0.15 -2.14 10.04 -39.60 -0.40 -2.53 16 19 C -0.10 -1.40 9.66 -39.52 -0.38 -1.79 16 20 C -0.13 -2.03 5.76 -104.45 -0.60 -2.63 16 21 C -0.07 -0.87 5.77 -28.01 -0.16 -1.04 16 22 C -0.13 -1.70 5.41 -26.35 -0.14 -1.84 16 23 C 0.14 2.23 3.40 -67.23 -0.23 2.00 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.15 -2.51 7.86 37.16 0.29 -2.22 16 26 H 0.08 2.23 5.93 -51.93 -0.31 1.92 16 27 H 0.05 1.02 4.60 -51.93 -0.24 0.78 16 28 H 0.02 0.44 7.58 -51.93 -0.39 0.05 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 30 H 0.16 3.32 3.66 -52.49 -0.19 3.12 16 31 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.17 7.42 -51.93 -0.39 0.78 16 39 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 40 H 0.08 1.52 6.57 -51.93 -0.34 1.18 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -29.51 304.67 -8.42 -37.94 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.45 Total: 4.50 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.98 Total: -15.50 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.36 Total: -35.22 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.51 -8.42 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596677643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.985 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds