Wall clock time and date at job start Mon Mar 30 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47209 * 2 1 4 4 C 1.50701 * 109.47358 * 119.99988 * 2 1 3 5 5 H 1.07992 * 120.00279 * 119.99569 * 4 2 1 6 6 C 1.37880 * 119.99601 * 300.27343 * 4 2 1 7 7 N 1.31509 * 120.00034 * 359.72943 * 6 4 2 8 8 Si 1.86797 * 119.99702 * 179.72020 * 6 4 2 9 9 H 1.48508 * 109.46711 * 90.00318 * 8 6 4 10 10 H 1.48500 * 109.47190 * 209.99946 * 8 6 4 11 11 H 1.48494 * 109.47423 * 330.00580 * 8 6 4 12 12 C 1.50705 * 109.47059 * 239.99990 * 2 1 3 13 13 O 1.21287 * 119.99655 * 216.44617 * 12 2 1 14 14 N 1.34773 * 119.99868 * 36.43898 * 12 2 1 15 15 C 1.40176 * 120.55211 * 26.21632 * 14 12 2 16 16 C 1.39039 * 119.14670 * 13.33081 * 15 14 12 17 17 C 1.38036 * 120.03303 * 180.14528 * 16 15 14 18 18 C 1.38307 * 119.91097 * 0.07733 * 17 16 15 19 19 C 1.38130 * 120.14774 * 359.87727 * 18 17 16 20 20 C 1.38499 * 120.30238 * 0.02562 * 19 18 17 21 21 C 1.50598 * 118.93039 * 180.37223 * 20 19 18 22 22 C 1.52848 * 110.49696 * 200.54365 * 21 20 19 23 23 C 1.46929 * 120.55016 * 205.92880 * 14 12 2 24 24 H 1.09004 * 109.79779 * 255.02909 * 23 14 12 25 25 C 1.53005 * 109.79061 * 15.87934 * 23 14 12 26 26 H 1.09001 * 109.46897 * 269.27695 * 1 2 3 27 27 H 1.08998 * 109.47130 * 29.27825 * 1 2 3 28 28 H 1.08997 * 109.47100 * 149.27768 * 1 2 3 29 29 H 0.97003 * 119.99964 * 180.02562 * 7 6 4 30 30 H 1.07991 * 119.98652 * 0.17404 * 16 15 14 31 31 H 1.07997 * 120.04957 * 180.02562 * 17 16 15 32 32 H 1.07997 * 119.93124 * 179.89622 * 18 17 16 33 33 H 1.07997 * 119.84651 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.26571 * 320.80080 * 21 20 19 35 35 H 1.08998 * 109.27266 * 80.30788 * 21 20 19 36 36 H 1.09005 * 109.57489 * 68.34812 * 22 21 20 37 37 H 1.09003 * 109.57711 * 188.60482 * 22 21 20 38 38 H 1.08995 * 109.47063 * 45.16474 * 25 23 14 39 39 H 1.09005 * 109.46548 * 165.16454 * 25 23 14 40 40 H 1.08994 * 109.47156 * 285.15818 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6946 -0.2426 2.4827 7 7 0.9385 0.8266 2.6033 8 14 2.3109 -1.1277 4.0079 9 1 3.6178 -0.5543 4.4187 10 1 1.3286 -0.9594 5.1087 11 1 2.4765 -2.5727 3.7087 12 6 2.0323 -0.7104 -1.2305 13 8 3.0311 -1.3959 -1.1697 14 7 1.3716 -0.5842 -2.3984 15 6 0.5977 0.5549 -2.6597 16 6 0.7346 1.6694 -1.8396 17 6 -0.0207 2.7998 -2.0784 18 6 -0.9148 2.8217 -3.1334 19 6 -1.0516 1.7160 -3.9499 20 6 -0.2961 0.5785 -3.7183 21 6 -0.4640 -0.6062 -4.6328 22 6 0.0327 -1.8818 -3.9528 23 6 1.4557 -1.6354 -3.4214 24 1 2.1055 -1.3091 -4.2336 25 6 2.0070 -2.9203 -2.7999 26 1 -0.3633 -0.0130 1.0276 27 1 -0.3633 0.8964 -0.5026 28 1 -0.3633 -0.8834 -0.5250 29 1 0.7012 1.1560 3.4843 30 1 1.4324 1.6507 -1.0157 31 1 0.0857 3.6657 -1.4419 32 1 -1.5071 3.7054 -3.3196 33 1 -1.7510 1.7385 -4.7726 34 1 -1.5185 -0.7199 -4.8842 35 1 0.1076 -0.4398 -5.5458 36 1 -0.6305 -2.1371 -3.1263 37 1 0.0478 -2.6984 -4.6746 38 1 1.5098 -3.1057 -1.8478 39 1 1.8247 -3.7572 -3.4741 40 1 3.0791 -2.8133 -2.6352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596677643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:19 Heat of formation + Delta-G solvation = -0.852219 kcal Electronic energy + Delta-G solvation = -22200.784761 eV Core-core repulsion = 19173.585516 eV Total energy + Delta-G solvation = -3027.199245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.36752 -39.66398 -37.66477 -36.20103 -34.84748 -32.87891 -32.15908 -30.60433 -28.78633 -27.26609 -25.77912 -24.63572 -23.26140 -23.14673 -21.56834 -19.86512 -18.73255 -18.04477 -17.52951 -16.90519 -16.78464 -16.27317 -15.71097 -15.42649 -15.10054 -14.74277 -14.59428 -14.34297 -14.10972 -13.81225 -13.47231 -13.28844 -13.00915 -12.90482 -12.85001 -12.79177 -12.54963 -12.42578 -12.17389 -12.09826 -11.92209 -11.75521 -11.53131 -10.98895 -10.81110 -10.54277 -10.28311 -9.39565 -8.58098 -8.19774 -6.31818 0.46257 0.56268 1.37521 1.37776 1.48936 1.69173 1.98547 2.40664 2.98521 3.09085 3.63498 3.77609 3.93880 3.99144 4.13496 4.22493 4.28676 4.41549 4.49588 4.52812 4.66277 4.69198 4.77007 4.79202 4.90529 4.96314 4.99161 5.05616 5.12566 5.22591 5.25079 5.28652 5.35510 5.47498 5.65030 5.66085 5.76423 5.80267 5.98617 6.11832 6.20538 6.55972 6.73705 7.18742 7.35906 8.85968 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.007261 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.162654 B = 3855.316787 C = 4887.587755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.024 3.976 3 H 0.053 0.947 4 C -0.533 4.533 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.527 3.473 13 O -0.549 6.549 14 N -0.572 5.572 15 C 0.151 3.849 16 C -0.185 4.185 17 C -0.111 4.111 18 C -0.143 4.143 19 C -0.095 4.095 20 C -0.130 4.130 21 C -0.070 4.070 22 C -0.122 4.122 23 C 0.129 3.871 24 H 0.083 0.917 25 C -0.146 4.146 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.266 0.734 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.115 0.885 38 H 0.027 0.973 39 H 0.096 0.904 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.064 0.635 -16.116 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.004 3.996 3 H 0.070 0.930 4 C -0.571 4.571 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.543 5.543 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.202 1.202 12 C 0.320 3.680 13 O -0.425 6.425 14 N -0.297 5.297 15 C 0.057 3.943 16 C -0.204 4.204 17 C -0.130 4.130 18 C -0.162 4.162 19 C -0.114 4.114 20 C -0.133 4.133 21 C -0.107 4.107 22 C -0.160 4.160 23 C 0.028 3.972 24 H 0.101 0.899 25 C -0.203 4.203 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.175 0.825 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.046 0.954 39 H 0.115 0.885 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.542 0.267 -15.914 17.208 hybrid contribution 0.729 -0.309 1.579 1.766 sum -5.813 -0.042 -14.335 15.469 Atomic orbital electron populations 1.21888 0.95347 0.98721 1.01520 1.19209 0.95260 0.95705 0.89442 0.92971 1.21236 1.31728 1.13171 0.90978 0.93591 1.25595 0.95016 0.95829 1.01380 1.70026 1.36428 1.23319 1.24479 0.85575 0.78419 0.78782 0.79010 1.19993 1.19746 1.20217 1.21730 0.81501 0.80190 0.84593 1.90492 1.24636 1.41517 1.85902 1.46089 1.47436 1.19642 1.16516 1.17800 0.93571 0.85961 0.97009 1.21928 1.03738 0.93661 1.01119 1.21120 0.96383 0.97031 0.98445 1.21322 0.99493 0.99915 0.95463 1.21212 0.98723 0.91464 0.99970 1.19792 0.97172 0.98701 0.97627 1.20463 1.03677 0.89775 0.96759 1.22018 0.93344 0.99574 1.01069 1.21732 0.98919 0.86938 0.89617 0.89867 1.22015 1.01662 0.96609 1.00027 0.92581 0.91915 0.96273 0.92460 0.85755 0.85283 0.83343 0.82454 0.87800 0.88797 0.92726 0.86686 0.95352 0.88510 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 7.71 71.98 0.55 -5.23 16 2 C 0.02 1.28 1.74 -12.28 -0.02 1.25 16 3 H 0.05 2.95 5.47 -2.39 -0.01 2.94 16 4 C -0.53 -31.53 8.33 25.60 0.21 -31.32 16 5 H 0.05 2.87 7.00 -2.91 -0.02 2.85 16 6 C 0.02 1.24 5.07 84.66 0.43 1.67 16 7 N -0.90 -51.50 11.55 21.45 0.25 -51.25 16 8 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 9 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.53 25.88 5.67 87.66 0.50 26.38 16 13 O -0.55 -29.51 12.97 -3.05 -0.04 -29.55 16 14 N -0.57 -22.56 2.66 -606.27 -1.61 -24.17 16 15 C 0.15 5.41 5.09 38.08 0.19 5.60 16 16 C -0.18 -7.02 5.79 22.41 0.13 -6.89 16 17 C -0.11 -3.45 9.85 22.24 0.22 -3.23 16 18 C -0.14 -3.47 10.04 22.26 0.22 -3.24 16 19 C -0.10 -2.15 9.66 22.31 0.22 -1.93 16 20 C -0.13 -3.53 5.76 -19.75 -0.11 -3.64 16 21 C -0.07 -1.37 5.77 29.77 0.17 -1.20 16 22 C -0.12 -2.78 5.41 30.84 0.17 -2.61 16 23 C 0.13 4.00 3.40 45.21 0.15 4.16 16 24 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 25 C -0.15 -4.83 7.86 71.98 0.57 -4.26 16 26 H 0.06 3.06 5.93 -2.39 -0.01 3.04 16 27 H 0.06 2.85 4.60 -2.39 -0.01 2.84 16 28 H 0.02 0.88 7.58 -2.39 -0.02 0.87 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.13 5.61 3.66 -2.92 -0.01 5.60 16 31 H 0.13 3.67 8.06 -2.91 -0.02 3.64 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.10 1.51 8.12 -2.38 -0.02 1.49 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.03 1.10 7.42 -2.39 -0.02 1.08 16 39 H 0.10 2.32 8.09 -2.38 -0.02 2.30 16 40 H 0.06 2.15 6.57 -2.39 -0.02 2.13 16 Total: -1.00 -69.23 304.67 5.27 -63.96 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.04 Total: 18.15 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.60 Total: -24.49 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -1.36 Total: -75.43 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.04 Total: -29.55 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -69.23 5.27 -63.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596677643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.108 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds