Wall clock time and date at job start Mon Mar 30 2020 07:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47367 * 2 1 4 4 C 1.50702 * 109.47275 * 120.00769 * 2 1 3 5 5 H 1.08002 * 120.00233 * 119.99456 * 4 2 1 6 6 C 1.37879 * 119.99533 * 299.99830 * 4 2 1 7 7 N 1.31509 * 120.00315 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99599 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47283 * 60.00053 * 8 6 4 10 10 H 1.48506 * 109.46902 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46997 * 299.99271 * 8 6 4 12 12 C 1.50703 * 109.46819 * 240.00102 * 2 1 3 13 13 O 1.21279 * 120.00086 * 267.48399 * 12 2 1 14 14 N 1.34780 * 119.99875 * 87.48428 * 12 2 1 15 15 C 1.43851 * 117.71418 * 353.57826 * 14 12 2 16 16 C 1.51435 * 110.81710 * 263.53251 * 15 14 12 17 17 C 1.52268 * 111.78629 * 300.13869 * 16 15 14 18 18 C 1.41545 * 108.85602 * 222.05903 * 17 16 15 19 19 C 1.37045 * 121.90264 * 180.08803 * 18 17 16 20 20 C 1.38356 * 118.79954 * 359.97438 * 19 18 17 21 21 C 1.37045 * 118.79753 * 359.97438 * 20 19 18 22 22 C 1.31874 * 131.84548 * 42.14520 * 17 16 15 23 23 C 1.52319 * 131.87986 * 359.92851 * 22 17 16 24 24 C 1.43845 * 117.71624 * 173.60291 * 14 12 2 25 25 H 1.09001 * 109.46659 * 292.15900 * 1 2 3 26 26 H 1.08995 * 109.46867 * 52.15623 * 1 2 3 27 27 H 1.08996 * 109.47422 * 172.16060 * 1 2 3 28 28 H 0.96995 * 120.00688 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.19938 * 23.86322 * 15 14 12 30 30 H 1.08998 * 109.19946 * 143.20006 * 15 14 12 31 31 H 1.08999 * 109.01546 * 60.79193 * 16 15 14 32 32 H 1.08994 * 109.01815 * 179.60743 * 16 15 14 33 33 H 1.08001 * 119.04825 * 0.11563 * 18 17 16 34 34 H 1.07995 * 120.59766 * 180.02562 * 19 18 17 35 35 H 1.07993 * 120.60099 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.04893 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.01816 * 197.38998 * 23 22 17 38 38 H 1.09003 * 109.01968 * 78.57391 * 23 22 17 39 39 H 1.09005 * 109.19933 * 216.83745 * 24 14 12 40 40 H 1.08995 * 109.20375 * 336.18040 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8299 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.8075 -1.1194 4.0076 10 1 1.8280 -0.4197 5.2204 11 1 1.8280 -2.5202 4.0079 12 6 2.0323 -0.7104 -1.2305 13 8 2.2778 -1.8973 -1.1877 14 7 2.2086 -0.0267 -2.3786 15 6 1.7704 1.3430 -2.4156 16 6 0.3878 1.4495 -3.0240 17 6 0.3547 0.9144 -4.4492 18 6 -0.4244 1.7861 -5.2471 19 6 -0.6325 1.5545 -6.5817 20 6 -0.0618 0.4350 -7.1608 21 6 0.6914 -0.4014 -6.3790 22 6 0.8985 -0.1527 -5.0011 23 6 1.7709 -1.2616 -4.4272 24 6 2.8211 -0.7178 -3.4815 25 1 -0.3633 0.3876 0.9518 26 1 -0.3633 0.6305 -0.8115 27 1 -0.3634 -1.0180 -0.1402 28 1 0.7096 1.1615 3.4844 29 1 1.7470 1.7393 -1.4005 30 1 2.4707 1.9273 -3.0124 31 1 -0.3136 0.8805 -2.4137 32 1 0.0826 2.4958 -3.0312 33 1 -0.8673 2.6592 -4.7910 34 1 -1.2305 2.2339 -7.1708 35 1 -0.2065 0.2246 -8.2101 36 1 1.1392 -1.2762 -6.8270 37 1 2.2661 -1.7836 -5.2458 38 1 1.1390 -1.9676 -3.8881 39 1 3.4676 -0.0269 -4.0228 40 1 3.4202 -1.5440 -3.0986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597256498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:24 Heat of formation + Delta-G solvation = -1.495472 kcal Electronic energy + Delta-G solvation = -21479.100205 eV Core-core repulsion = 18451.873067 eV Total energy + Delta-G solvation = -3027.227139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35048 -38.86652 -35.70834 -34.27220 -33.24608 -32.22410 -30.58249 -29.40066 -27.37142 -25.19386 -24.61874 -23.18146 -22.47328 -21.52053 -19.64711 -18.29119 -16.65202 -16.28569 -16.07992 -15.64892 -15.37137 -15.09836 -14.51633 -14.18107 -13.77935 -13.35699 -13.04189 -12.87925 -12.84600 -12.42641 -12.27755 -11.79818 -11.60166 -11.39481 -11.36355 -11.22640 -10.98449 -10.87435 -10.68580 -10.51972 -10.34522 -10.02845 -10.00446 -8.96652 -8.77884 -8.63266 -8.54505 -8.25154 -7.97399 -6.03250 -4.06934 1.35505 1.56196 3.35829 3.38489 3.43672 3.68900 3.80859 3.82037 4.46821 4.56345 4.82692 4.96968 5.04057 5.28078 5.29841 5.32560 5.42322 5.46476 5.54876 5.63748 5.75328 5.82149 5.93537 6.00604 6.03105 6.12569 6.25717 6.31961 6.33818 6.52557 6.56121 6.72348 6.76570 6.92326 7.00650 7.11659 7.34827 7.44025 7.78983 7.97109 8.12449 8.39582 8.98197 9.23513 9.57860 11.03488 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035278 B = 0.004774 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.512946 B = 5864.035012 C = 6368.843050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.030 3.970 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.067 0.933 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.514 3.486 13 O -0.546 6.546 14 N -0.615 5.615 15 C 0.111 3.889 16 C -0.108 4.108 17 C -0.057 4.057 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.060 4.060 23 C -0.096 4.096 24 C 0.120 3.880 25 H 0.096 0.904 26 H 0.021 0.979 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 3.879 -16.603 17.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.009 3.991 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.306 3.694 13 O -0.421 6.421 14 N -0.349 5.349 15 C -0.013 4.013 16 C -0.146 4.146 17 C -0.057 4.057 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.060 4.060 23 C -0.134 4.134 24 C -0.004 4.004 25 H 0.114 0.886 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.496 3.366 -16.463 16.870 hybrid contribution 0.105 -0.339 0.527 0.635 sum -1.390 3.027 -15.937 16.281 Atomic orbital electron populations 1.21862 0.96285 0.98844 1.02470 1.18919 0.94300 0.96554 0.89319 0.93248 1.21045 1.31084 1.12482 0.89175 0.91458 1.24918 0.95105 0.95057 0.99005 1.69840 1.36948 1.22977 1.23659 0.86532 0.79219 0.79836 0.81720 1.20242 1.21324 1.20167 1.22160 0.75093 0.87576 0.84564 1.90511 1.50503 1.16212 1.84912 1.46821 1.62652 1.12550 1.12878 1.20835 0.94097 0.83049 1.03298 1.21458 0.99653 1.01310 0.92165 1.18780 0.96811 0.93933 0.96224 1.22075 0.98850 0.99484 0.94146 1.20941 1.00519 0.97946 0.95393 1.20930 0.98704 0.95657 0.99547 1.22040 0.99447 0.99482 0.93751 1.18757 0.98279 0.95254 0.93720 1.21171 0.97243 0.95775 0.99238 1.20448 0.94559 0.97642 0.87769 0.88586 0.96020 0.95273 0.92865 0.87781 0.91916 0.89279 0.89877 0.86329 0.86396 0.86448 0.86560 0.90343 0.90428 0.92026 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.98 37.16 0.33 -2.85 16 2 C 0.03 0.73 1.81 -92.92 -0.17 0.57 16 3 H 0.05 1.22 5.96 -51.93 -0.31 0.91 16 4 C -0.50 -14.05 8.33 -34.44 -0.29 -14.34 16 5 H 0.07 2.00 7.08 -52.49 -0.37 1.63 16 6 C 0.06 1.65 5.28 -17.82 -0.09 1.55 16 7 N -0.89 -24.70 11.29 55.43 0.63 -24.07 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.51 11.77 6.62 -10.98 -0.07 11.69 16 13 O -0.55 -14.17 15.17 5.56 0.08 -14.08 16 14 N -0.62 -11.12 2.42 -179.74 -0.44 -11.56 16 15 C 0.11 1.71 5.35 -6.24 -0.03 1.68 16 16 C -0.11 -1.51 5.45 -27.90 -0.15 -1.66 16 17 C -0.06 -0.80 5.64 -104.49 -0.59 -1.39 16 18 C -0.13 -1.54 9.24 -38.76 -0.36 -1.90 16 19 C -0.13 -1.43 10.07 -39.97 -0.40 -1.84 16 20 C -0.13 -1.43 10.07 -39.97 -0.40 -1.84 16 21 C -0.13 -1.56 9.24 -38.76 -0.36 -1.91 16 22 C -0.06 -0.84 5.65 -104.46 -0.59 -1.43 16 23 C -0.10 -1.36 5.70 -27.87 -0.16 -1.52 16 24 C 0.12 1.88 5.63 -6.24 -0.04 1.84 16 25 H 0.10 2.45 5.90 -51.93 -0.31 2.14 16 26 H 0.02 0.42 4.81 -51.93 -0.25 0.17 16 27 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.10 1.74 5.19 -51.93 -0.27 1.47 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.42 5.47 -51.93 -0.28 1.13 16 32 H 0.08 0.96 7.17 -51.93 -0.37 0.59 16 33 H 0.12 1.21 7.32 -52.49 -0.38 0.83 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.18 7.32 -52.49 -0.38 0.80 16 37 H 0.08 0.90 7.17 -51.93 -0.37 0.53 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.49 7.07 -51.93 -0.37 1.12 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -30.81 310.26 -8.78 -39.59 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.34 Total: 2.15 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.37 Total: -13.33 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.19 Total: -35.63 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.08 Total: -14.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.81 -8.78 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597256498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.096 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds