Wall clock time and date at job start Mon Mar 30 2020 07:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47367 * 2 1 4 4 C 1.50702 * 109.47275 * 120.00769 * 2 1 3 5 5 H 1.08002 * 120.00233 * 119.99456 * 4 2 1 6 6 C 1.37879 * 119.99533 * 299.99830 * 4 2 1 7 7 N 1.31509 * 120.00315 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99599 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47283 * 60.00053 * 8 6 4 10 10 H 1.48506 * 109.46902 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46997 * 299.99271 * 8 6 4 12 12 C 1.50703 * 109.46819 * 240.00102 * 2 1 3 13 13 O 1.21279 * 120.00086 * 267.48399 * 12 2 1 14 14 N 1.34780 * 119.99875 * 87.48428 * 12 2 1 15 15 C 1.43851 * 117.71418 * 353.57826 * 14 12 2 16 16 C 1.51435 * 110.81710 * 263.53251 * 15 14 12 17 17 C 1.52268 * 111.78629 * 300.13869 * 16 15 14 18 18 C 1.41545 * 108.85602 * 222.05903 * 17 16 15 19 19 C 1.37045 * 121.90264 * 180.08803 * 18 17 16 20 20 C 1.38356 * 118.79954 * 359.97438 * 19 18 17 21 21 C 1.37045 * 118.79753 * 359.97438 * 20 19 18 22 22 C 1.31874 * 131.84548 * 42.14520 * 17 16 15 23 23 C 1.52319 * 131.87986 * 359.92851 * 22 17 16 24 24 C 1.43845 * 117.71624 * 173.60291 * 14 12 2 25 25 H 1.09001 * 109.46659 * 292.15900 * 1 2 3 26 26 H 1.08995 * 109.46867 * 52.15623 * 1 2 3 27 27 H 1.08996 * 109.47422 * 172.16060 * 1 2 3 28 28 H 0.96995 * 120.00688 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.19938 * 23.86322 * 15 14 12 30 30 H 1.08998 * 109.19946 * 143.20006 * 15 14 12 31 31 H 1.08999 * 109.01546 * 60.79193 * 16 15 14 32 32 H 1.08994 * 109.01815 * 179.60743 * 16 15 14 33 33 H 1.08001 * 119.04825 * 0.11563 * 18 17 16 34 34 H 1.07995 * 120.59766 * 180.02562 * 19 18 17 35 35 H 1.07993 * 120.60099 * 180.02562 * 20 19 18 36 36 H 1.08002 * 119.04893 * 180.02562 * 21 20 19 37 37 H 1.08995 * 109.01816 * 197.38998 * 23 22 17 38 38 H 1.09003 * 109.01968 * 78.57391 * 23 22 17 39 39 H 1.09005 * 109.19933 * 216.83745 * 24 14 12 40 40 H 1.08995 * 109.20375 * 336.18040 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6532 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8299 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.8075 -1.1194 4.0076 10 1 1.8280 -0.4197 5.2204 11 1 1.8280 -2.5202 4.0079 12 6 2.0323 -0.7104 -1.2305 13 8 2.2778 -1.8973 -1.1877 14 7 2.2086 -0.0267 -2.3786 15 6 1.7704 1.3430 -2.4156 16 6 0.3878 1.4495 -3.0240 17 6 0.3547 0.9144 -4.4492 18 6 -0.4244 1.7861 -5.2471 19 6 -0.6325 1.5545 -6.5817 20 6 -0.0618 0.4350 -7.1608 21 6 0.6914 -0.4014 -6.3790 22 6 0.8985 -0.1527 -5.0011 23 6 1.7709 -1.2616 -4.4272 24 6 2.8211 -0.7178 -3.4815 25 1 -0.3633 0.3876 0.9518 26 1 -0.3633 0.6305 -0.8115 27 1 -0.3634 -1.0180 -0.1402 28 1 0.7096 1.1615 3.4844 29 1 1.7470 1.7393 -1.4005 30 1 2.4707 1.9273 -3.0124 31 1 -0.3136 0.8805 -2.4137 32 1 0.0826 2.4958 -3.0312 33 1 -0.8673 2.6592 -4.7910 34 1 -1.2305 2.2339 -7.1708 35 1 -0.2065 0.2246 -8.2101 36 1 1.1392 -1.2762 -6.8270 37 1 2.2661 -1.7836 -5.2458 38 1 1.1390 -1.9676 -3.8881 39 1 3.4676 -0.0269 -4.0228 40 1 3.4202 -1.5440 -3.0986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597256498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:23 Heat of formation + Delta-G solvation = -17.978280 kcal Electronic energy + Delta-G solvation = -21479.814953 eV Core-core repulsion = 18451.873067 eV Total energy + Delta-G solvation = -3027.941887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.67819 -40.14498 -37.20623 -36.03868 -34.65687 -33.36352 -32.37929 -30.56102 -28.59922 -27.27048 -25.82067 -24.71206 -23.36230 -23.14070 -20.68179 -19.85297 -18.46817 -17.97225 -17.35195 -17.06299 -16.51366 -16.44152 -16.01620 -15.61302 -15.06923 -14.88300 -14.64305 -14.12496 -13.97579 -13.77477 -13.58120 -13.23667 -13.05908 -12.90748 -12.83566 -12.63505 -12.59659 -12.39667 -12.24020 -12.11959 -12.04624 -11.88124 -11.30676 -10.87065 -10.57528 -10.18332 -9.85801 -9.52287 -9.35209 -8.14342 -6.25174 0.47499 0.63265 1.41134 1.42742 1.50913 1.90195 2.29801 2.49116 2.90698 3.14276 3.54506 3.81000 3.95652 4.05585 4.19161 4.27159 4.31992 4.39511 4.43049 4.54320 4.58502 4.67471 4.71732 4.83707 4.87686 4.92275 4.97801 5.02184 5.05536 5.14648 5.23480 5.33912 5.46168 5.64786 5.67185 5.70117 5.80839 5.94211 5.98149 6.20655 6.21129 6.60556 6.80034 7.39006 7.51857 8.90559 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035278 B = 0.004774 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.512946 B = 5864.035012 C = 6368.843050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.024 3.976 7 N -0.906 5.906 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.512 3.488 13 O -0.588 6.588 14 N -0.603 5.603 15 C 0.105 3.895 16 C -0.102 4.102 17 C -0.078 4.078 18 C -0.135 4.135 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.137 4.137 22 C -0.081 4.081 23 C -0.088 4.088 24 C 0.115 3.885 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.010 0.990 28 H 0.266 0.734 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 5.339 -18.676 19.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.568 4.568 5 H 0.059 0.941 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.206 1.206 12 C 0.303 3.697 13 O -0.468 6.468 14 N -0.335 5.335 15 C -0.018 4.018 16 C -0.139 4.139 17 C -0.078 4.078 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.081 4.081 23 C -0.126 4.126 24 C -0.008 4.008 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.154 0.846 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.868 4.872 -18.570 19.290 hybrid contribution 0.205 -0.738 1.067 1.313 sum -1.662 4.134 -17.503 18.062 Atomic orbital electron populations 1.21687 0.95569 0.98267 1.02615 1.18841 0.94889 0.96229 0.89337 0.93226 1.21200 1.31868 1.12415 0.91352 0.94111 1.25533 0.95151 0.95723 1.01186 1.69910 1.36862 1.23343 1.24424 0.85699 0.78811 0.78619 0.79036 1.19913 1.19740 1.20617 1.21844 0.75161 0.87031 0.85626 1.90480 1.52731 1.17811 1.85784 1.46789 1.61324 1.13325 1.12017 1.21030 0.96012 0.81533 1.03193 1.21390 0.97657 1.02706 0.92186 1.18862 0.98023 0.94754 0.96124 1.22255 0.98619 0.99739 0.94710 1.21319 0.99981 0.98182 0.95190 1.21304 0.97525 0.95085 1.00787 1.22212 0.99894 1.00412 0.93012 1.18831 0.99078 0.95330 0.94873 1.21092 0.96518 0.95680 0.99315 1.20645 0.95249 0.97614 0.87289 0.90684 0.92596 0.97030 0.92475 0.89283 0.89090 0.91715 0.87019 0.84637 0.83762 0.83817 0.84970 0.87524 0.93575 0.89077 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.98 71.98 0.65 -5.26 16 2 C 0.03 1.42 1.81 -12.28 -0.02 1.40 16 3 H 0.05 2.50 5.96 -2.39 -0.01 2.49 16 4 C -0.53 -30.92 8.33 25.60 0.21 -30.71 16 5 H 0.04 2.54 7.08 -2.91 -0.02 2.52 16 6 C 0.02 1.32 5.28 84.66 0.45 1.77 16 7 N -0.91 -50.39 11.29 21.45 0.24 -50.15 16 8 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 9 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.51 24.29 6.62 87.66 0.58 24.87 16 13 O -0.59 -32.14 15.17 -3.03 -0.05 -32.19 16 14 N -0.60 -21.90 2.42 -840.95 -2.04 -23.94 16 15 C 0.11 3.13 5.35 86.36 0.46 3.59 16 16 C -0.10 -2.69 5.45 29.84 0.16 -2.53 16 17 C -0.08 -2.00 5.64 -19.37 -0.11 -2.11 16 18 C -0.14 -2.85 9.24 22.80 0.21 -2.64 16 19 C -0.13 -2.34 10.07 22.02 0.22 -2.12 16 20 C -0.13 -2.36 10.07 22.02 0.22 -2.14 16 21 C -0.14 -2.93 9.24 22.80 0.21 -2.72 16 22 C -0.08 -2.11 5.65 -19.35 -0.11 -2.22 16 23 C -0.09 -2.44 5.70 29.86 0.17 -2.27 16 24 C 0.12 3.57 5.63 86.36 0.49 4.06 16 25 H 0.07 3.91 5.90 -2.39 -0.01 3.89 16 26 H 0.06 2.23 4.81 -2.39 -0.01 2.22 16 27 H 0.01 0.54 8.13 -2.39 -0.02 0.52 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.09 2.94 5.19 -2.39 -0.01 2.93 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.02 5.47 -2.39 -0.01 2.01 16 32 H 0.11 2.28 7.17 -2.39 -0.02 2.26 16 33 H 0.14 2.29 7.32 -2.91 -0.02 2.27 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.13 2.29 7.32 -2.91 -0.02 2.27 16 37 H 0.11 2.28 7.17 -2.39 -0.02 2.26 16 38 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.29 8.14 -2.38 -0.02 2.28 16 40 H 0.07 2.37 7.07 -2.39 -0.02 2.35 16 Total: -1.00 -68.57 310.26 5.03 -63.55 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.05 Total: 14.84 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 3.79 Total: -19.03 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.79 Total: -74.08 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.05 Total: -32.19 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.57 5.03 -63.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597256498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.571 kcal (2) G-P(sol) polarization free energy of solvation -68.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds