Wall clock time and date at job start Mon Mar 30 2020 07:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47269 * 2 1 4 4 C 1.35875 * 117.00451 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.22166 * 0.62500 * 4 3 2 6 6 C 1.38749 * 120.31946 * 179.97438 * 5 4 3 7 7 C 1.37758 * 120.71570 * 359.64570 * 6 5 4 8 8 C 1.39178 * 120.02807 * 359.97438 * 7 6 5 9 9 C 1.40012 * 120.22516 * 179.97438 * 4 3 2 10 10 C 1.46487 * 133.98702 * 359.97438 * 9 4 3 11 11 C 1.34217 * 106.99360 * 180.02562 * 10 9 4 12 12 N 1.36929 * 109.89377 * 359.97438 * 11 10 9 13 13 C 1.46500 * 125.06480 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46930 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46959 * 60.03074 * 13 12 11 16 16 C 1.52997 * 109.47520 * 300.02791 * 13 12 11 17 17 C 1.50701 * 109.47212 * 184.99880 * 16 13 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 13 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 H 1.09005 * 109.46892 * 299.99800 * 1 2 3 26 26 H 1.08996 * 109.47069 * 59.99970 * 1 2 3 27 27 H 1.09007 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47264 * 240.00115 * 2 1 3 29 29 H 1.09003 * 109.47185 * 119.99644 * 2 1 3 30 30 H 1.08000 * 119.83709 * 359.55078 * 5 4 3 31 31 H 1.07999 * 119.64370 * 179.66644 * 6 5 4 32 32 H 1.08009 * 119.98740 * 180.02562 * 7 6 5 33 33 H 1.08002 * 126.50619 * 359.97438 * 10 9 4 34 34 H 1.07997 * 125.05050 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47403 * 59.99567 * 15 13 12 36 36 H 1.09001 * 109.46917 * 180.02562 * 15 13 12 37 37 H 1.09004 * 109.46741 * 299.99432 * 15 13 12 38 38 H 1.09002 * 109.47153 * 64.99881 * 16 13 12 39 39 H 1.09001 * 109.46832 * 305.00072 * 16 13 12 40 40 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3534 1.5254 -0.0005 5 6 4.1993 0.4330 -0.0141 6 6 5.5751 0.6125 -0.0152 7 6 6.1196 1.8779 -0.0102 8 6 5.2881 2.9939 -0.0045 9 6 3.8935 2.8171 -0.0011 10 6 3.3136 4.1623 -0.0018 11 6 4.3371 5.0306 -0.0027 12 7 5.5254 4.3503 -0.0021 13 6 6.8516 4.9727 -0.0034 14 1 7.6171 4.1967 -0.0030 15 6 7.0074 5.8434 1.2451 16 6 7.0063 5.8411 -1.2534 17 6 8.4111 6.3829 -1.3180 18 1 9.1225 6.1325 -0.5450 19 6 8.7884 7.1974 -2.3646 20 7 7.9222 7.5019 -3.3061 21 14 10.5298 7.8684 -2.4450 22 1 11.3027 7.3810 -1.2744 23 1 11.1818 7.4043 -3.6960 24 1 10.4896 9.3528 -2.4289 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7876 -0.5655 -0.0169 31 1 6.2263 -0.2491 -0.0204 32 1 7.1923 2.0040 -0.0115 33 1 2.2621 4.4087 -0.0023 34 1 4.2380 6.1060 -0.0030 35 1 6.8972 5.2247 2.1357 36 1 7.9940 6.3069 1.2439 37 1 6.2419 6.6194 1.2447 38 1 6.2991 6.6694 -1.2102 39 1 6.8076 5.2397 -2.1405 40 1 8.1875 8.0753 -4.0422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:27 Heat of formation + Delta-G solvation = 5.737447 kcal Electronic energy + Delta-G solvation = -20498.136799 eV Core-core repulsion = 17471.223303 eV Total energy + Delta-G solvation = -3026.913496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98959 -39.06665 -36.20703 -34.58320 -32.48276 -31.86939 -29.94524 -28.69011 -27.83749 -27.06942 -24.12341 -23.45250 -22.07139 -21.28361 -20.94254 -19.19467 -17.11310 -16.65917 -16.20648 -16.05031 -15.67197 -14.90008 -14.74203 -14.51048 -14.16080 -13.39364 -13.17170 -13.08372 -12.74681 -12.49610 -12.32714 -12.29697 -11.95846 -11.94548 -11.56984 -11.23959 -11.06859 -11.02948 -10.91336 -10.69987 -10.59662 -10.50002 -10.15488 -9.69363 -9.31943 -8.72566 -8.50247 -7.80267 -6.94882 -6.13873 -4.18516 1.56181 1.95061 3.19334 3.23278 3.24440 3.31533 3.34268 3.55643 4.21440 4.35438 4.83043 4.88455 5.05300 5.14879 5.22109 5.22749 5.29870 5.34387 5.50274 5.61442 5.66407 5.70584 5.82195 5.87768 5.92394 5.99203 6.07171 6.21502 6.38307 6.45434 6.60678 6.63808 6.71485 6.81694 6.93470 7.19893 7.42055 7.47323 7.62832 7.76065 7.81094 7.93820 8.20461 8.86520 9.46355 10.97233 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.003791 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.449373 B = 7383.247044 C = 7577.927536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.313 6.313 4 C 0.173 3.827 5 C -0.255 4.255 6 C -0.071 4.071 7 C -0.159 4.159 8 C 0.134 3.866 9 C -0.137 4.137 10 C -0.206 4.206 11 C 0.063 3.937 12 N -0.461 5.461 13 C 0.131 3.869 14 H 0.085 0.915 15 C -0.147 4.147 16 C 0.020 3.980 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.929 -12.586 7.829 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.227 6.227 4 C 0.128 3.872 5 C -0.275 4.275 6 C -0.090 4.090 7 C -0.180 4.180 8 C 0.024 3.976 9 C -0.143 4.143 10 C -0.230 4.230 11 C -0.064 4.064 12 N -0.141 5.141 13 C 0.031 3.969 14 H 0.103 0.897 15 C -0.205 4.205 16 C -0.018 4.018 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.789 -12.132 7.671 17.374 hybrid contribution 1.049 0.219 -0.279 1.107 sum -8.741 -11.913 7.392 16.522 Atomic orbital electron populations 1.21766 0.93123 1.02478 1.03473 1.22707 0.95502 0.82621 1.01214 1.86045 1.19636 1.28522 1.88484 1.18265 0.81484 0.92104 0.95376 1.20729 0.94123 0.96938 1.15694 1.20392 0.93969 0.95806 0.98878 1.19940 0.98705 0.90159 1.09221 1.18012 0.93085 0.84662 1.01821 1.18339 0.92237 0.91425 1.12292 1.21419 0.98130 0.89751 1.13746 1.21764 0.83815 0.98122 1.02703 1.44719 1.07234 1.03158 1.58989 1.21849 0.79419 0.96382 0.99238 0.89654 1.22049 1.03734 0.99248 0.95438 1.19449 0.97928 0.94099 0.90292 1.21069 0.96132 1.30263 1.08726 0.92160 1.25002 0.97513 0.96201 0.95461 1.69976 1.34476 1.36471 1.11830 0.86492 0.84406 0.78753 0.78109 1.19624 1.20903 1.20894 0.91635 0.91560 0.90688 0.92229 0.92303 0.86212 0.86091 0.86329 0.84129 0.81833 0.94035 0.89897 0.92607 0.95757 0.95885 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.84 16 2 C 0.06 0.57 5.46 37.16 0.20 0.78 16 3 O -0.31 -4.67 10.15 -19.35 -0.20 -4.87 16 4 C 0.17 2.87 6.72 -38.94 -0.26 2.61 16 5 C -0.25 -3.70 9.04 -39.42 -0.36 -4.06 16 6 C -0.07 -1.03 10.01 -39.57 -0.40 -1.43 16 7 C -0.16 -2.70 9.80 -39.41 -0.39 -3.08 16 8 C 0.13 2.54 6.81 -84.00 -0.57 1.97 16 9 C -0.14 -2.54 6.32 -105.03 -0.66 -3.21 16 10 C -0.21 -3.62 11.08 -37.68 -0.42 -4.04 16 11 C 0.06 1.13 10.25 -16.69 -0.17 0.96 16 12 N -0.46 -8.94 2.65 -107.34 -0.28 -9.22 16 13 C 0.13 2.65 2.95 -67.93 -0.20 2.45 16 14 H 0.09 1.71 7.32 -51.93 -0.38 1.33 16 15 C -0.15 -2.62 9.04 37.16 0.34 -2.28 16 16 C 0.02 0.49 4.43 -27.88 -0.12 0.37 16 17 C -0.52 -13.88 8.41 -34.44 -0.29 -14.17 16 18 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 21 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.57 7.64 -51.93 -0.40 0.18 16 29 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 30 H 0.12 1.39 6.29 -52.49 -0.33 1.06 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.88 7.55 -52.48 -0.40 1.48 16 33 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.16 2.65 8.06 -52.49 -0.42 2.23 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 37 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 38 H 0.02 0.63 8.04 -51.93 -0.42 0.21 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -30.40 332.62 -8.75 -39.14 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.98 Total: 1.71 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -3.01 Total: -22.41 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.45 Total: -34.42 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.20 Total: -4.87 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.40 -8.75 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.882 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds