Wall clock time and date at job start Mon Mar 30 2020 07:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47269 * 2 1 4 4 C 1.35875 * 117.00451 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.22166 * 0.62500 * 4 3 2 6 6 C 1.38749 * 120.31946 * 179.97438 * 5 4 3 7 7 C 1.37758 * 120.71570 * 359.64570 * 6 5 4 8 8 C 1.39178 * 120.02807 * 359.97438 * 7 6 5 9 9 C 1.40012 * 120.22516 * 179.97438 * 4 3 2 10 10 C 1.46487 * 133.98702 * 359.97438 * 9 4 3 11 11 C 1.34217 * 106.99360 * 180.02562 * 10 9 4 12 12 N 1.36929 * 109.89377 * 359.97438 * 11 10 9 13 13 C 1.46500 * 125.06480 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46930 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46959 * 60.03074 * 13 12 11 16 16 C 1.52997 * 109.47520 * 300.02791 * 13 12 11 17 17 C 1.50701 * 109.47212 * 184.99880 * 16 13 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 13 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 H 1.09005 * 109.46892 * 299.99800 * 1 2 3 26 26 H 1.08996 * 109.47069 * 59.99970 * 1 2 3 27 27 H 1.09007 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47264 * 240.00115 * 2 1 3 29 29 H 1.09003 * 109.47185 * 119.99644 * 2 1 3 30 30 H 1.08000 * 119.83709 * 359.55078 * 5 4 3 31 31 H 1.07999 * 119.64370 * 179.66644 * 6 5 4 32 32 H 1.08009 * 119.98740 * 180.02562 * 7 6 5 33 33 H 1.08002 * 126.50619 * 359.97438 * 10 9 4 34 34 H 1.07997 * 125.05050 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47403 * 59.99567 * 15 13 12 36 36 H 1.09001 * 109.46917 * 180.02562 * 15 13 12 37 37 H 1.09004 * 109.46741 * 299.99432 * 15 13 12 38 38 H 1.09002 * 109.47153 * 64.99881 * 16 13 12 39 39 H 1.09001 * 109.46832 * 305.00072 * 16 13 12 40 40 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3534 1.5254 -0.0005 5 6 4.1993 0.4330 -0.0141 6 6 5.5751 0.6125 -0.0152 7 6 6.1196 1.8779 -0.0102 8 6 5.2881 2.9939 -0.0045 9 6 3.8935 2.8171 -0.0011 10 6 3.3136 4.1623 -0.0018 11 6 4.3371 5.0306 -0.0027 12 7 5.5254 4.3503 -0.0021 13 6 6.8516 4.9727 -0.0034 14 1 7.6171 4.1967 -0.0030 15 6 7.0074 5.8434 1.2451 16 6 7.0063 5.8411 -1.2534 17 6 8.4111 6.3829 -1.3180 18 1 9.1225 6.1325 -0.5450 19 6 8.7884 7.1974 -2.3646 20 7 7.9222 7.5019 -3.3061 21 14 10.5298 7.8684 -2.4450 22 1 11.3027 7.3810 -1.2744 23 1 11.1818 7.4043 -3.6960 24 1 10.4896 9.3528 -2.4289 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7876 -0.5655 -0.0169 31 1 6.2263 -0.2491 -0.0204 32 1 7.1923 2.0040 -0.0115 33 1 2.2621 4.4087 -0.0023 34 1 4.2380 6.1060 -0.0030 35 1 6.8972 5.2247 2.1357 36 1 7.9940 6.3069 1.2439 37 1 6.2419 6.6194 1.2447 38 1 6.2991 6.6694 -1.2102 39 1 6.8076 5.2397 -2.1405 40 1 8.1875 8.0753 -4.0422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:25 Heat of formation + Delta-G solvation = -9.440026 kcal Electronic energy + Delta-G solvation = -20498.794943 eV Core-core repulsion = 17471.223303 eV Total energy + Delta-G solvation = -3027.571640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.32116 -40.20833 -37.52985 -36.19165 -34.34004 -32.81926 -31.25026 -30.04916 -29.22961 -28.75241 -25.76534 -24.61315 -23.30324 -22.86896 -22.14602 -20.51177 -18.79111 -18.17545 -17.65249 -16.99252 -16.98737 -16.59368 -16.16685 -15.73846 -15.59610 -15.03541 -14.48376 -14.31175 -14.00321 -13.79866 -13.57959 -13.54948 -13.31693 -13.13250 -12.92234 -12.86512 -12.75380 -12.39547 -12.26290 -12.19776 -11.91205 -11.79870 -11.56590 -11.44118 -11.34086 -10.62473 -10.05307 -9.13979 -8.28756 -8.20999 -6.36291 0.29576 0.68787 1.40256 1.41091 1.53673 1.84451 1.95001 2.37515 2.42812 2.94784 3.10408 3.80717 3.87844 3.95897 4.08218 4.11987 4.24434 4.27094 4.31071 4.40869 4.44115 4.49477 4.56226 4.75615 4.84809 4.89112 4.99025 4.99155 5.03891 5.14170 5.22316 5.24052 5.35556 5.41432 5.47410 5.59979 5.69747 5.75936 5.88741 6.07336 6.30704 6.50149 6.61495 6.78796 7.33537 8.88064 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.003791 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.449373 B = 7383.247044 C = 7577.927536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.330 6.330 4 C 0.165 3.835 5 C -0.249 4.249 6 C -0.058 4.058 7 C -0.185 4.185 8 C 0.110 3.890 9 C -0.167 4.167 10 C -0.206 4.206 11 C 0.043 3.957 12 N -0.474 5.474 13 C 0.143 3.857 14 H 0.086 0.914 15 C -0.137 4.137 16 C 0.032 3.968 17 C -0.532 4.532 18 H 0.073 0.927 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.282 1.282 24 H -0.279 1.279 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.122 0.878 33 H 0.157 0.843 34 H 0.172 0.828 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.002 0.998 39 H -0.019 1.019 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.601 -14.555 8.952 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.244 6.244 4 C 0.119 3.881 5 C -0.269 4.269 6 C -0.077 4.077 7 C -0.206 4.206 8 C 0.002 3.998 9 C -0.172 4.172 10 C -0.230 4.230 11 C -0.083 4.083 12 N -0.155 5.155 13 C 0.042 3.958 14 H 0.104 0.896 15 C -0.195 4.195 16 C -0.006 4.006 17 C -0.571 4.571 18 H 0.091 0.909 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.791 3.209 22 H -0.180 1.180 23 H -0.208 1.208 24 H -0.205 1.205 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.172 0.828 31 H 0.175 0.825 32 H 0.140 0.860 33 H 0.175 0.825 34 H 0.190 0.810 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.020 0.980 39 H -0.001 1.001 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.481 -14.123 8.814 19.158 hybrid contribution 0.811 0.671 -0.647 1.235 sum -8.671 -13.452 8.167 17.968 Atomic orbital electron populations 1.21804 0.91513 1.04180 1.02998 1.23091 0.96841 0.80778 1.02375 1.86034 1.18744 1.31448 1.88202 1.18437 0.82639 0.91909 0.95111 1.21146 0.93931 0.97942 1.13911 1.20856 0.94652 0.95974 0.96232 1.20212 0.98947 0.90670 1.10735 1.18435 0.94005 0.84778 1.02626 1.18686 0.92410 0.92631 1.13522 1.21683 0.98765 0.89732 1.12868 1.22006 0.83822 0.98734 1.03731 1.44625 1.06876 1.03686 1.60268 1.21516 0.80388 0.95934 0.97938 0.89628 1.21947 1.03474 0.99105 0.94965 1.19225 0.96898 0.93397 0.91032 1.21487 0.96978 1.29774 1.08837 0.90917 1.25963 1.01901 0.96630 0.95099 1.70122 1.36849 1.37538 1.12709 0.85369 0.79105 0.77976 0.78439 1.17977 1.20842 1.20491 0.91951 0.92226 0.87853 0.91190 0.90818 0.82829 0.82453 0.85959 0.82542 0.81044 0.91945 0.90236 0.92530 0.97967 1.00058 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.28 71.98 0.74 -1.31 16 2 C 0.04 0.80 5.46 71.98 0.39 1.19 16 3 O -0.33 -9.41 10.15 -92.15 -0.93 -10.34 16 4 C 0.17 5.27 6.72 22.68 0.15 5.42 16 5 C -0.25 -6.58 9.04 22.38 0.20 -6.38 16 6 C -0.06 -1.55 10.01 22.28 0.22 -1.32 16 7 C -0.18 -6.13 9.80 22.38 0.22 -5.91 16 8 C 0.11 4.23 6.81 39.02 0.27 4.50 16 9 C -0.17 -6.22 6.32 -20.13 -0.13 -6.35 16 10 C -0.21 -7.40 11.08 23.50 0.26 -7.14 16 11 C 0.04 1.60 10.25 82.98 0.85 2.45 16 12 N -0.47 -18.89 2.65 -493.50 -1.31 -20.20 16 13 C 0.14 5.91 2.95 44.99 0.13 6.05 16 14 H 0.09 3.48 7.32 -2.39 -0.02 3.46 16 15 C -0.14 -4.86 9.04 71.98 0.65 -4.21 16 16 C 0.03 1.66 4.43 29.85 0.13 1.79 16 17 C -0.53 -28.66 8.41 25.60 0.22 -28.45 16 18 H 0.07 3.65 7.06 -2.91 -0.02 3.63 16 19 C 0.00 0.13 5.46 84.66 0.46 0.59 16 20 N -0.93 -55.94 13.29 21.45 0.28 -55.65 16 21 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.07 1.13 7.64 -2.39 -0.02 1.11 16 29 H 0.07 1.13 7.69 -2.39 -0.02 1.11 16 30 H 0.15 2.93 6.29 -2.91 -0.02 2.91 16 31 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.12 3.83 7.55 -2.91 -0.02 3.81 16 33 H 0.16 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.17 5.86 8.06 -2.91 -0.02 5.83 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.85 6.95 -2.39 -0.02 2.83 16 37 H 0.06 1.97 7.89 -2.39 -0.02 1.95 16 38 H 0.00 0.11 8.04 -2.39 -0.02 0.09 16 39 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 40 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -67.24 332.62 5.85 -61.39 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.01 Total: 18.99 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 4.77 Total: -39.08 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.03 Total: -75.85 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.93 Total: -10.34 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -67.24 5.85 -61.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.948 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds