Wall clock time and date at job start Mon Mar 30 2020 07:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42893 * 109.47539 * 2 1 4 4 C 1.35991 * 117.00536 * 179.97438 * 3 2 1 5 5 C 1.39272 * 119.86453 * 0.25427 * 4 3 2 6 6 C 1.37676 * 120.62444 * 180.29978 * 5 4 3 7 7 C 1.39102 * 119.99515 * 359.72703 * 6 5 4 8 8 C 1.40623 * 119.51643 * 359.97438 * 7 6 5 9 9 C 1.46495 * 106.06793 * 180.02562 * 8 7 6 10 10 C 1.34250 * 107.02065 * 0.02562 * 9 8 7 11 11 N 1.36804 * 109.93642 * 0.02562 * 10 9 8 12 12 C 1.46500 * 125.07157 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47060 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47219 * 59.97190 * 12 11 10 15 15 C 1.53006 * 109.46982 * 299.97282 * 12 11 10 16 16 C 1.50697 * 109.46972 * 185.00283 * 15 12 11 17 17 H 1.08001 * 120.00168 * 359.97438 * 16 15 12 18 18 C 1.37876 * 119.99950 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99823 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99927 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47122 * 60.00195 * 20 18 16 22 22 H 1.48502 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47305 * 299.99985 * 20 18 16 24 24 C 1.38033 * 119.87004 * 179.97438 * 4 3 2 25 25 H 1.08994 * 109.46975 * 59.99949 * 1 2 3 26 26 H 1.08995 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46911 * 300.00224 * 1 2 3 28 28 H 1.08997 * 109.47063 * 239.99501 * 2 1 3 29 29 H 1.09008 * 109.47061 * 120.00146 * 2 1 3 30 30 H 1.08005 * 119.69029 * 0.02797 * 5 4 3 31 31 H 1.07997 * 120.00574 * 179.74839 * 6 5 4 32 32 H 1.07992 * 126.49047 * 180.02562 * 9 8 7 33 33 H 1.07995 * 125.02834 * 179.97438 * 10 9 8 34 34 H 1.09005 * 109.46743 * 179.97438 * 14 12 11 35 35 H 1.08997 * 109.47011 * 299.99917 * 14 12 11 36 36 H 1.08995 * 109.46694 * 59.99946 * 14 12 11 37 37 H 1.09003 * 109.46904 * 305.00120 * 15 12 11 38 38 H 1.09001 * 109.47042 * 65.00087 * 15 12 11 39 39 H 0.97004 * 119.99638 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.20058 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.2004 0.4189 -0.0043 6 6 5.5675 0.5812 0.0024 7 6 6.1161 1.8595 0.0083 8 6 5.2648 2.9787 0.0069 9 6 6.1397 4.1537 0.0136 10 6 7.4040 3.7021 0.0178 11 7 7.4108 2.3341 0.0138 12 6 8.6139 1.4982 0.0172 13 1 8.3259 0.4470 0.0132 14 6 9.4386 1.7964 1.2710 15 6 9.4500 1.8028 -1.2275 16 6 10.6230 0.8587 -1.2880 17 1 10.7588 0.1160 -0.5158 18 6 11.5233 0.9437 -2.3288 19 7 11.3581 1.8484 -3.2689 20 14 12.9777 -0.2262 -2.4034 21 1 12.4846 -1.6254 -2.4690 22 1 13.7898 0.0702 -3.6109 23 1 13.8153 -0.0529 -1.1895 24 6 3.8793 2.8021 0.0000 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7799 -0.5759 -0.0089 31 1 6.2141 -0.2839 0.0026 32 1 5.8270 5.1873 0.0149 33 1 8.2852 4.3264 0.0228 34 1 10.3335 1.1741 1.2737 35 1 9.7265 2.8476 1.2750 36 1 8.8429 1.5794 2.1577 37 1 8.8349 1.6757 -2.1184 38 1 9.8122 2.8297 -1.1795 39 1 11.9918 1.9084 -4.0009 40 1 3.2224 3.6594 -0.0012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:55 Heat of formation + Delta-G solvation = 5.805479 kcal Electronic energy + Delta-G solvation = -20339.085340 eV Core-core repulsion = 17312.174794 eV Total energy + Delta-G solvation = -3026.910546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95346 -39.19184 -36.11010 -34.42730 -32.46330 -31.90750 -30.53484 -28.40952 -27.82508 -27.04700 -23.88596 -23.69059 -22.26211 -21.34775 -20.78628 -18.85266 -17.60051 -16.92840 -16.03496 -15.99523 -15.79239 -15.01966 -14.72381 -14.20723 -13.77449 -13.37544 -13.18155 -13.13073 -12.85930 -12.68559 -12.47062 -12.34738 -12.07782 -11.96229 -11.58294 -11.47978 -11.24142 -11.05992 -10.96112 -10.60989 -10.38849 -10.29351 -10.12260 -9.72815 -9.36546 -9.06352 -8.51182 -7.61334 -6.99983 -6.15244 -4.20249 1.41381 1.99458 3.19377 3.23931 3.28259 3.29768 3.31960 3.48698 4.20051 4.33916 4.82288 4.85048 5.05859 5.09266 5.16703 5.20421 5.28421 5.37926 5.45721 5.62984 5.65068 5.65233 5.80686 5.86090 5.95182 5.97235 6.05241 6.19002 6.33142 6.41593 6.56496 6.62351 6.64582 6.69875 6.94035 7.20303 7.39479 7.46070 7.61906 7.73714 7.80279 7.92342 8.18763 8.84342 9.44633 10.95738 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.003801 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.122176 B = 7364.830471 C = 7896.094900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.322 6.322 4 C 0.090 3.910 5 C -0.188 4.188 6 C -0.083 4.083 7 C 0.070 3.930 8 C -0.073 4.073 9 C -0.236 4.236 10 C 0.085 3.915 11 N -0.464 5.464 12 C 0.131 3.869 13 H 0.084 0.916 14 C -0.147 4.147 15 C 0.021 3.979 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.115 4.115 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.124 0.876 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.264 0.736 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.042 -1.320 7.747 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.237 6.237 4 C 0.045 3.955 5 C -0.207 4.207 6 C -0.104 4.104 7 C -0.037 4.037 8 C -0.078 4.078 9 C -0.261 4.261 10 C -0.044 4.044 11 N -0.144 5.144 12 C 0.031 3.969 13 H 0.102 0.898 14 C -0.205 4.205 15 C -0.017 4.017 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.135 4.135 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.795 -1.318 7.579 16.675 hybrid contribution 1.043 -0.873 -0.253 1.384 sum -13.751 -2.191 7.327 15.735 Atomic orbital electron populations 1.21760 0.93230 1.02498 1.03320 1.22661 0.95386 0.82745 1.01134 1.86018 1.19398 1.28366 1.89910 1.18461 0.81678 0.93680 1.01707 1.20766 0.93042 0.97638 1.09290 1.19832 0.94203 0.94235 1.02098 1.18258 0.84472 0.94410 1.06516 1.18891 0.91654 0.93107 1.04178 1.21451 0.91011 0.96981 1.16634 1.21802 0.98647 0.83454 1.00521 1.44678 1.04697 1.05557 1.59494 1.21826 0.82556 0.93380 0.99158 0.89833 1.22052 1.00403 1.02601 0.95432 1.19439 0.93937 0.97945 0.90369 1.20993 1.08867 1.17461 1.09085 0.92289 1.24996 0.98095 0.95587 0.95430 1.69955 1.36852 1.33885 1.12073 0.86603 0.82292 0.81255 0.77567 1.20123 1.21167 1.20099 1.19474 0.92796 0.94418 1.06762 0.91651 0.90703 0.91709 0.92342 0.92428 0.85784 0.86110 0.84092 0.81844 0.89942 0.92604 0.94069 0.95918 0.95780 0.92660 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.57 5.45 37.16 0.20 0.77 16 3 O -0.32 -4.50 10.13 -19.71 -0.20 -4.70 16 4 C 0.09 1.39 6.68 -39.27 -0.26 1.13 16 5 C -0.19 -2.79 9.01 -39.40 -0.36 -3.15 16 6 C -0.08 -1.39 9.80 -39.47 -0.39 -1.77 16 7 C 0.07 1.30 6.81 -83.92 -0.57 0.73 16 8 C -0.07 -1.29 6.37 -105.14 -0.67 -1.96 16 9 C -0.24 -3.89 11.08 -37.66 -0.42 -4.31 16 10 C 0.08 1.47 10.25 -16.74 -0.17 1.30 16 11 N -0.46 -8.79 2.66 -107.31 -0.29 -9.07 16 12 C 0.13 2.61 2.96 -67.93 -0.20 2.41 16 13 H 0.08 1.65 7.33 -51.93 -0.38 1.27 16 14 C -0.15 -2.59 9.04 37.16 0.34 -2.25 16 15 C 0.02 0.51 4.43 -27.88 -0.12 0.38 16 16 C -0.53 -13.85 8.41 -34.44 -0.29 -14.14 16 17 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 20 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 24 C -0.12 -1.87 10.03 -39.12 -0.39 -2.27 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.56 7.64 -51.93 -0.40 0.17 16 29 H 0.06 0.54 7.66 -51.92 -0.40 0.14 16 30 H 0.12 1.50 6.26 -52.48 -0.33 1.17 16 31 H 0.12 1.86 7.55 -52.49 -0.40 1.46 16 32 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.16 2.55 8.06 -52.49 -0.42 2.12 16 34 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 35 H 0.05 0.95 7.89 -51.93 -0.41 0.54 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.02 0.62 8.04 -51.93 -0.42 0.20 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -29.94 332.55 -8.75 -38.70 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.98 Total: 1.75 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -3.02 Total: -22.33 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.45 Total: -34.15 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.20 Total: -4.70 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.94 -8.75 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.501 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds