Wall clock time and date at job start Mon Mar 30 2020 07:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47232 * 2 1 4 4 C 1.35988 * 117.00052 * 179.97438 * 3 2 1 5 5 C 1.39272 * 119.86374 * 359.97438 * 4 3 2 6 6 C 1.37683 * 120.61958 * 180.02562 * 5 4 3 7 7 C 1.39102 * 119.99593 * 359.97438 * 6 5 4 8 8 C 1.40615 * 119.52319 * 359.97438 * 7 6 5 9 9 C 1.46490 * 106.07181 * 179.76548 * 8 7 6 10 10 C 1.34239 * 107.02382 * 0.39775 * 9 8 7 11 11 N 1.36807 * 109.93248 * 359.59421 * 10 9 8 12 12 C 1.46505 * 125.07402 * 180.24680 * 11 10 9 13 13 H 1.08997 * 109.47176 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.46891 * 300.02799 * 12 11 10 15 15 C 1.52999 * 109.46934 * 60.02364 * 12 11 10 16 16 C 1.50705 * 109.46917 * 175.00230 * 15 12 11 17 17 H 1.08000 * 119.99988 * 359.97438 * 16 15 12 18 18 C 1.37881 * 119.99862 * 180.02562 * 16 15 12 19 19 N 1.31511 * 120.00285 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99722 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47271 * 59.99803 * 20 18 16 22 22 H 1.48502 * 109.47041 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47033 * 299.99879 * 20 18 16 24 24 C 1.38043 * 119.86887 * 179.97438 * 4 3 2 25 25 H 1.08997 * 109.46883 * 59.99651 * 1 2 3 26 26 H 1.08997 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46979 * 300.00442 * 1 2 3 28 28 H 1.08994 * 109.47135 * 239.99277 * 2 1 3 29 29 H 1.09000 * 109.46513 * 119.99680 * 2 1 3 30 30 H 1.07993 * 119.69024 * 359.97438 * 5 4 3 31 31 H 1.08002 * 120.00254 * 180.02562 * 6 5 4 32 32 H 1.08003 * 126.48892 * 180.25586 * 9 8 7 33 33 H 1.08002 * 125.03689 * 179.86407 * 10 9 8 34 34 H 1.09005 * 109.47116 * 180.02562 * 14 12 11 35 35 H 1.09004 * 109.46923 * 299.99617 * 14 12 11 36 36 H 1.08997 * 109.47598 * 59.99784 * 14 12 11 37 37 H 1.09004 * 109.47231 * 294.99996 * 15 12 11 38 38 H 1.08995 * 109.47492 * 55.00197 * 15 12 11 39 39 H 0.96995 * 120.00344 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.19444 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.2003 0.4189 0.0016 6 6 5.5675 0.5812 0.0027 7 6 6.1160 1.8596 0.0022 8 6 5.2648 2.9788 0.0000 9 6 6.1398 4.1537 0.0058 10 6 7.4040 3.7023 0.0020 11 7 7.4107 2.3343 0.0033 12 6 8.6139 1.4983 0.0052 13 1 8.3259 0.4471 0.0055 14 6 9.4457 1.7990 -1.2432 15 6 9.4428 1.8005 1.2552 16 6 10.6155 0.8562 1.3206 17 1 10.7553 0.1145 0.5481 18 6 11.5093 0.9385 2.3673 19 7 11.3382 1.8407 3.3087 20 14 12.9625 -0.2324 2.4486 21 1 13.8078 -0.0571 1.2403 22 1 13.7665 0.0601 3.6625 23 1 12.4682 -1.6315 2.5082 24 6 3.8793 2.8022 0.0000 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7798 -0.5758 0.0024 31 1 6.2141 -0.2838 0.0031 32 1 5.8269 5.1874 0.0099 33 1 8.2853 4.3266 0.0026 34 1 10.3407 1.1767 -1.2420 35 1 8.8551 1.5837 -2.1338 36 1 9.7337 2.8502 -1.2435 37 1 9.8053 2.8275 1.2114 38 1 8.8227 1.6716 2.1423 39 1 11.9672 1.8988 4.0448 40 1 3.2224 3.6594 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:00 Heat of formation + Delta-G solvation = -8.716574 kcal Electronic energy + Delta-G solvation = -20340.103239 eV Core-core repulsion = 17312.562969 eV Total energy + Delta-G solvation = -3027.540269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 4.96 seconds Orbital eigenvalues (eV) -42.26877 -40.30843 -37.48057 -35.96748 -34.31382 -32.85527 -31.78486 -29.73539 -29.32077 -28.62209 -25.68063 -24.63509 -23.54237 -22.88342 -21.93541 -20.25733 -18.82474 -18.66265 -17.64620 -17.02022 -16.93576 -16.61496 -16.17246 -15.64492 -15.28255 -14.71963 -14.55193 -14.30050 -13.97318 -13.84611 -13.73360 -13.65826 -13.57074 -13.15358 -13.01146 -12.89072 -12.71084 -12.45545 -12.35548 -12.25120 -11.90624 -11.60640 -11.50210 -11.36177 -11.22671 -10.60809 -10.42384 -8.90179 -8.32974 -8.21531 -6.36185 0.14556 0.72253 1.40827 1.43015 1.50770 1.86241 2.02435 2.37168 2.41641 2.92485 3.10479 3.71863 3.85088 3.97116 4.06196 4.12500 4.20805 4.26546 4.32460 4.40598 4.43345 4.45459 4.63515 4.75636 4.85787 4.93041 4.94822 5.00032 5.04848 5.11351 5.22631 5.24836 5.33241 5.36513 5.42691 5.47154 5.70991 5.73517 5.92233 6.07815 6.32760 6.51741 6.61419 6.78680 7.33632 8.87800 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025926 B = 0.003804 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.754184 B = 7359.859938 C = 7892.216869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.091 3.909 5 C -0.178 4.178 6 C -0.099 4.099 7 C 0.043 3.957 8 C -0.091 4.091 9 C -0.229 4.229 10 C 0.062 3.938 11 N -0.476 5.476 12 C 0.143 3.857 13 H 0.083 0.917 14 C -0.138 4.138 15 C 0.033 3.967 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.004 3.996 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.262 1.262 22 H -0.287 1.287 23 H -0.267 1.267 24 C -0.126 4.126 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.154 0.846 31 H 0.128 0.872 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.003 0.997 38 H -0.019 1.019 39 H 0.264 0.736 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.897 -2.627 -8.951 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.045 3.955 5 C -0.198 4.198 6 C -0.119 4.119 7 C -0.063 4.063 8 C -0.097 4.097 9 C -0.254 4.254 10 C -0.065 4.065 11 N -0.157 5.157 12 C 0.042 3.958 13 H 0.101 0.899 14 C -0.195 4.195 15 C -0.005 4.005 16 C -0.574 4.574 17 H 0.090 0.910 18 C -0.195 4.195 19 N -0.572 5.572 20 Si 0.790 3.210 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.146 4.146 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.172 0.828 31 H 0.146 0.854 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.021 0.979 38 H -0.001 1.001 39 H 0.073 0.927 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.677 -2.628 -8.802 18.170 hybrid contribution 1.134 -0.478 0.628 1.382 sum -14.543 -3.106 -8.174 16.969 Atomic orbital electron populations 1.21791 0.91384 1.04085 1.03150 1.23026 0.96920 0.81124 1.02011 1.86030 1.18266 1.30876 1.89560 1.18597 0.82646 0.93605 1.00637 1.21074 0.92264 0.98991 1.07450 1.20077 0.95191 0.93929 1.02713 1.18652 0.84416 0.95587 1.07663 1.19170 0.92364 0.93318 1.04801 1.21807 0.90452 0.98027 1.15086 1.22111 0.99619 0.83187 1.01583 1.44588 1.04485 1.05936 1.60738 1.21484 0.82844 0.93631 0.97853 0.89855 1.21950 0.99975 1.02605 0.94997 1.19220 0.93710 0.96519 0.91069 1.21439 1.09341 1.17679 1.08898 0.90989 1.25947 1.01189 0.97254 0.95087 1.70099 1.38323 1.36095 1.12654 0.85495 0.78671 0.79102 0.77778 1.18703 1.21314 1.19202 1.19696 0.92478 0.95541 1.06852 0.91736 0.88225 0.91984 0.91255 0.91664 0.82845 0.85376 0.81512 0.80916 0.90389 0.91976 0.92433 0.97870 1.00059 0.92731 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.04 0.78 5.45 71.98 0.39 1.17 16 3 O -0.33 -8.65 10.13 -93.41 -0.95 -9.60 16 4 C 0.09 2.68 6.68 22.47 0.15 2.83 16 5 C -0.18 -5.01 9.01 22.39 0.20 -4.81 16 6 C -0.10 -3.23 9.80 22.35 0.22 -3.01 16 7 C 0.04 1.58 6.81 38.98 0.27 1.85 16 8 C -0.09 -3.21 6.37 -20.20 -0.13 -3.34 16 9 C -0.23 -7.48 11.08 23.51 0.26 -7.22 16 10 C 0.06 2.20 10.25 83.00 0.85 3.05 16 11 N -0.48 -18.28 2.66 -493.44 -1.31 -19.60 16 12 C 0.14 5.76 2.96 44.99 0.13 5.89 16 13 H 0.08 3.31 7.33 -2.39 -0.02 3.29 16 14 C -0.14 -4.75 9.04 71.98 0.65 -4.10 16 15 C 0.03 1.65 4.43 29.85 0.13 1.78 16 16 C -0.54 -28.50 8.41 25.60 0.22 -28.29 16 17 H 0.07 3.57 7.06 -2.91 -0.02 3.54 16 18 C 0.00 0.20 5.46 84.66 0.46 0.67 16 19 N -0.93 -55.46 13.29 21.45 0.28 -55.18 16 20 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 24 C -0.13 -4.00 10.03 22.57 0.23 -3.77 16 25 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.08 7.65 -2.39 -0.02 1.06 16 29 H 0.07 1.08 7.65 -2.39 -0.02 1.06 16 30 H 0.15 3.28 6.26 -2.91 -0.02 3.26 16 31 H 0.13 3.87 7.55 -2.91 -0.02 3.85 16 32 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.17 5.52 8.06 -2.91 -0.02 5.49 16 34 H 0.08 2.74 6.95 -2.38 -0.02 2.72 16 35 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.06 1.94 7.89 -2.39 -0.02 1.92 16 37 H 0.00 0.16 8.04 -2.38 -0.02 0.14 16 38 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 40 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -65.12 332.55 5.84 -59.28 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.01 Total: 19.06 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 4.77 Total: -38.46 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -1.03 Total: -74.77 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.95 Total: -9.60 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.12 5.84 -59.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.568 kcal (2) G-P(sol) polarization free energy of solvation -65.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.96 seconds