Wall clock time and date at job start Mon Mar 30 2020 08:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00421 * 2 1 4 4 H 1.48498 * 109.46828 * 270.00443 * 3 2 1 5 5 H 1.48497 * 109.46896 * 30.00212 * 3 2 1 6 6 H 1.48495 * 109.47103 * 150.00282 * 3 2 1 7 7 C 1.37882 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00144 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47100 * 179.97438 * 9 7 2 11 11 C 1.39867 * 119.99748 * 90.00085 * 10 9 7 12 12 C 1.38893 * 120.07494 * 268.87003 * 11 10 9 13 13 C 1.38106 * 119.92630 * 179.97438 * 12 11 10 14 14 C 1.38286 * 120.07548 * 359.97438 * 13 12 11 15 15 C 1.38277 * 120.14231 * 0.27933 * 14 13 12 16 16 C 1.38118 * 120.07424 * 359.48675 * 15 14 13 17 17 C 1.37650 * 119.99702 * 270.00217 * 10 9 7 18 18 N 1.29570 * 119.84996 * 357.33271 * 17 10 9 19 19 C 1.47467 * 119.89840 * 184.21014 * 18 17 10 20 20 C 1.52430 * 109.95090 * 289.37914 * 19 18 17 21 21 C 1.52704 * 110.82189 * 85.38916 * 20 19 18 22 22 C 1.51459 * 112.34290 * 293.09014 * 21 20 19 23 23 N 1.37421 * 119.83680 * 177.60223 * 17 10 9 24 24 H 0.97005 * 119.99624 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47063 * 60.00519 * 9 7 2 26 26 H 1.08997 * 109.47297 * 300.00351 * 9 7 2 27 27 H 1.08000 * 120.03223 * 359.95944 * 12 11 10 28 28 H 1.08004 * 119.95684 * 180.02562 * 13 12 11 29 29 H 1.07997 * 119.92451 * 180.02562 * 14 13 12 30 30 H 1.08001 * 119.96452 * 179.71861 * 15 14 13 31 31 H 1.07996 * 120.03697 * 180.25352 * 16 15 14 32 32 H 1.08998 * 109.39352 * 169.19769 * 19 18 17 33 33 H 1.08994 * 109.27034 * 49.48558 * 19 18 17 34 34 H 1.08999 * 109.21004 * 325.03901 * 20 19 18 35 35 H 1.09005 * 109.20602 * 205.73019 * 20 19 18 36 36 H 1.09004 * 108.90931 * 172.35048 * 21 20 19 37 37 H 1.08996 * 108.90726 * 53.82714 * 21 20 19 38 38 H 1.09000 * 109.37813 * 302.01744 * 22 21 20 39 39 H 1.09007 * 109.37770 * 182.36798 * 22 21 20 40 40 H 0.96993 * 120.89605 * 68.99174 * 23 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0018 11 6 2.6581 -4.1449 1.2090 12 6 3.8115 -3.6445 1.7993 13 6 4.2580 -4.1718 2.9950 14 6 3.5579 -5.1966 3.6049 15 6 2.4122 -5.7006 3.0172 16 6 1.9575 -5.1745 1.8239 17 6 2.6491 -4.1354 -1.1945 18 7 2.1863 -3.6749 -2.3137 19 6 2.5929 -4.2955 -3.5881 20 6 4.0532 -3.9718 -3.8818 21 6 4.9799 -4.9690 -3.1900 22 6 4.9339 -4.8468 -1.6811 23 7 3.5794 -5.1469 -1.1923 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 4.3586 -2.8440 1.3235 28 1 5.1546 -3.7828 3.4547 29 1 3.9090 -5.6068 4.5402 30 1 1.8702 -6.5041 3.4938 31 1 1.0604 -5.5658 1.3675 32 1 1.9674 -3.9110 -4.3937 33 1 2.4683 -5.3760 -3.5179 34 1 4.2766 -2.9667 -3.5240 35 1 4.2204 -4.0139 -4.9581 36 1 6.0016 -4.7945 -3.5275 37 1 4.6846 -5.9797 -3.4717 38 1 5.2061 -3.8317 -1.3920 39 1 5.6415 -5.5487 -1.2396 40 1 3.3490 -6.0347 -0.8768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697697190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:03 Heat of formation + Delta-G solvation = 71.344825 kcal Electronic energy + Delta-G solvation = -21514.533400 eV Core-core repulsion = 18522.757605 eV Total energy + Delta-G solvation = -2991.775795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.154 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -39.47143 -38.14914 -35.59770 -32.89693 -32.59708 -31.92911 -30.54471 -29.28263 -26.72653 -26.45388 -24.03679 -22.63472 -22.13672 -21.31497 -20.31647 -18.39435 -17.59820 -16.33934 -16.07453 -15.87591 -14.90641 -14.79018 -14.55110 -14.14598 -13.95808 -13.47505 -13.29623 -13.05144 -12.63443 -12.43011 -12.12741 -11.99260 -11.62919 -11.37742 -11.15121 -11.04613 -10.76579 -10.64508 -10.52009 -10.39549 -10.18118 -9.87392 -9.21211 -8.62028 -8.57191 -8.35382 -8.24527 -7.82335 -6.94216 -5.91661 -3.95178 1.70557 1.77435 3.29277 3.36368 3.42130 3.44974 3.72716 4.15435 4.33510 4.53376 4.99994 5.25212 5.25645 5.30597 5.37097 5.41647 5.43540 5.68843 5.79095 5.82432 5.87860 5.94231 5.99623 6.10978 6.14516 6.22241 6.33018 6.38787 6.58100 6.67732 6.71399 6.83139 7.02345 7.08307 7.36598 7.45452 7.66383 7.96757 8.10688 8.15882 8.38588 8.66787 9.05325 9.41829 9.68156 11.15135 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.008776 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.476159 B = 3189.756874 C = 4771.330797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.268 3.732 10 N -0.565 5.565 11 C 0.186 3.814 12 C -0.105 4.105 13 C -0.118 4.118 14 C -0.133 4.133 15 C -0.118 4.118 16 C -0.128 4.128 17 C 0.624 3.376 18 N -0.599 5.599 19 C 0.081 3.919 20 C -0.131 4.131 21 C -0.139 4.139 22 C 0.146 3.854 23 N -0.808 5.808 24 H 0.261 0.739 25 H 0.055 0.945 26 H 0.023 0.977 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -12.851 1.042 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.149 3.851 10 N -0.283 5.283 11 C 0.094 3.906 12 C -0.125 4.125 13 C -0.137 4.137 14 C -0.152 4.152 15 C -0.137 4.137 16 C -0.148 4.148 17 C 0.262 3.738 18 N -0.333 5.333 19 C -0.050 4.050 20 C -0.169 4.169 21 C -0.178 4.178 22 C 0.020 3.980 23 N -0.461 5.461 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 8.473 -11.877 0.642 14.604 hybrid contribution 0.996 0.149 0.177 1.023 sum 9.469 -11.728 0.818 15.096 Atomic orbital electron populations 1.69935 1.05860 1.26653 1.51149 1.24878 0.94794 0.98847 0.95525 0.86587 0.79680 0.83615 0.78021 1.20729 1.21320 1.20157 1.21402 0.93085 0.90690 1.49933 0.92858 1.19259 0.86543 0.81002 0.98257 1.44557 1.48268 1.36356 0.99124 1.17485 0.92689 0.92641 0.87795 1.21557 0.96432 0.99048 0.95416 1.21001 0.99977 0.97102 0.95595 1.21016 0.96285 0.97975 0.99882 1.20916 0.96860 1.00270 0.95637 1.21475 1.00087 0.97027 0.96223 1.18699 0.84751 0.83612 0.86787 1.72783 1.31639 1.32475 0.96399 1.21701 0.93681 0.96572 0.93043 1.21691 0.96067 0.99789 0.99389 1.21754 0.99319 0.99719 0.97010 1.20799 0.83531 1.00858 0.92814 1.44739 1.11243 1.11189 1.78935 0.92950 0.92733 0.95896 0.86029 0.86532 0.86719 0.86518 0.86351 0.91363 0.94628 0.91579 0.92442 0.92132 0.92382 0.92173 0.91637 0.77472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.48 9.39 -34.44 -0.32 -14.80 16 8 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.27 7.06 5.18 -5.19 -0.03 7.03 16 10 N -0.56 -12.22 2.56 -116.54 -0.30 -12.51 16 11 C 0.19 3.49 4.45 -83.71 -0.37 3.12 16 12 C -0.10 -1.85 9.97 -39.39 -0.39 -2.24 16 13 C -0.12 -1.71 10.04 -39.61 -0.40 -2.11 16 14 C -0.13 -1.76 10.04 -39.55 -0.40 -2.15 16 15 C -0.12 -1.61 10.04 -39.61 -0.40 -2.01 16 16 C -0.13 -2.09 9.97 -39.39 -0.39 -2.48 16 17 C 0.62 12.53 7.37 -320.88 -2.37 10.17 16 18 N -0.60 -13.09 9.38 -61.55 -0.58 -13.66 16 19 C 0.08 1.43 6.37 -3.80 -0.02 1.41 16 20 C -0.13 -1.98 5.74 -27.17 -0.16 -2.14 16 21 C -0.14 -1.75 5.63 -27.66 -0.16 -1.91 16 22 C 0.15 1.99 6.57 -4.50 -0.03 1.97 16 23 N -0.81 -12.63 4.17 -62.32 -0.26 -12.89 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.05 1.58 7.32 -51.93 -0.38 1.20 16 26 H 0.02 0.64 8.05 -51.93 -0.42 0.22 16 27 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 28 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 29 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 0.59 7.70 -51.93 -0.40 0.19 16 34 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.69 8.01 -51.93 -0.42 0.27 16 38 H 0.06 0.94 8.05 -51.93 -0.42 0.53 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.39 5.48 8.96 -40.82 -0.37 5.12 16 LS Contribution 331.64 15.07 5.00 5.00 Total: -1.00 -30.93 331.64 -12.12 -43.05 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.17 Total: 4.51 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -5.53 Total: -4.50 kcal Atomic # 7 Polarization: -64.82 SS G_CDS: -0.40 Total: -65.22 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.93 -12.12 -43.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697697190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.393 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds