Wall clock time and date at job start Mon Mar 30 2020 08:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00421 * 2 1 4 4 H 1.48498 * 109.46828 * 270.00443 * 3 2 1 5 5 H 1.48497 * 109.46896 * 30.00212 * 3 2 1 6 6 H 1.48495 * 109.47103 * 150.00282 * 3 2 1 7 7 C 1.37882 * 119.99400 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00144 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47100 * 179.97438 * 9 7 2 11 11 C 1.39867 * 119.99748 * 90.00085 * 10 9 7 12 12 C 1.38893 * 120.07494 * 268.87003 * 11 10 9 13 13 C 1.38106 * 119.92630 * 179.97438 * 12 11 10 14 14 C 1.38286 * 120.07548 * 359.97438 * 13 12 11 15 15 C 1.38277 * 120.14231 * 0.27933 * 14 13 12 16 16 C 1.38118 * 120.07424 * 359.48675 * 15 14 13 17 17 C 1.37650 * 119.99702 * 270.00217 * 10 9 7 18 18 N 1.29570 * 119.84996 * 357.33271 * 17 10 9 19 19 C 1.47467 * 119.89840 * 184.21014 * 18 17 10 20 20 C 1.52430 * 109.95090 * 289.37914 * 19 18 17 21 21 C 1.52704 * 110.82189 * 85.38916 * 20 19 18 22 22 C 1.51459 * 112.34290 * 293.09014 * 21 20 19 23 23 N 1.37421 * 119.83680 * 177.60223 * 17 10 9 24 24 H 0.97005 * 119.99624 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47063 * 60.00519 * 9 7 2 26 26 H 1.08997 * 109.47297 * 300.00351 * 9 7 2 27 27 H 1.08000 * 120.03223 * 359.95944 * 12 11 10 28 28 H 1.08004 * 119.95684 * 180.02562 * 13 12 11 29 29 H 1.07997 * 119.92451 * 180.02562 * 14 13 12 30 30 H 1.08001 * 119.96452 * 179.71861 * 15 14 13 31 31 H 1.07996 * 120.03697 * 180.25352 * 16 15 14 32 32 H 1.08998 * 109.39352 * 169.19769 * 19 18 17 33 33 H 1.08994 * 109.27034 * 49.48558 * 19 18 17 34 34 H 1.08999 * 109.21004 * 325.03901 * 20 19 18 35 35 H 1.09005 * 109.20602 * 205.73019 * 20 19 18 36 36 H 1.09004 * 108.90931 * 172.35048 * 21 20 19 37 37 H 1.08996 * 108.90726 * 53.82714 * 21 20 19 38 38 H 1.09000 * 109.37813 * 302.01744 * 22 21 20 39 39 H 1.09007 * 109.37770 * 182.36798 * 22 21 20 40 40 H 0.96993 * 120.89605 * 68.99174 * 23 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0018 11 6 2.6581 -4.1449 1.2090 12 6 3.8115 -3.6445 1.7993 13 6 4.2580 -4.1718 2.9950 14 6 3.5579 -5.1966 3.6049 15 6 2.4122 -5.7006 3.0172 16 6 1.9575 -5.1745 1.8239 17 6 2.6491 -4.1354 -1.1945 18 7 2.1863 -3.6749 -2.3137 19 6 2.5929 -4.2955 -3.5881 20 6 4.0532 -3.9718 -3.8818 21 6 4.9799 -4.9690 -3.1900 22 6 4.9339 -4.8468 -1.6811 23 7 3.5794 -5.1469 -1.1923 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 4.3586 -2.8440 1.3235 28 1 5.1546 -3.7828 3.4547 29 1 3.9090 -5.6068 4.5402 30 1 1.8702 -6.5041 3.4938 31 1 1.0604 -5.5658 1.3675 32 1 1.9674 -3.9110 -4.3937 33 1 2.4683 -5.3760 -3.5179 34 1 4.2766 -2.9667 -3.5240 35 1 4.2204 -4.0139 -4.9581 36 1 6.0016 -4.7945 -3.5275 37 1 4.6846 -5.9797 -3.4717 38 1 5.2061 -3.8317 -1.3920 39 1 5.6415 -5.5487 -1.2396 40 1 3.3490 -6.0347 -0.8768 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697697190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:00 Heat of formation + Delta-G solvation = 54.735168 kcal Electronic energy + Delta-G solvation = -21515.253649 eV Core-core repulsion = 18522.757605 eV Total energy + Delta-G solvation = -2992.496044 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.154 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85991 -39.41221 -37.07857 -34.82230 -34.06664 -33.37722 -31.74459 -30.81051 -28.61545 -27.77394 -25.53423 -24.44679 -23.36410 -22.65992 -21.51952 -19.87741 -18.98823 -18.48110 -17.46786 -17.14344 -16.61887 -16.26238 -15.86142 -15.65589 -15.23940 -14.83056 -14.57706 -14.42739 -14.22034 -13.93871 -13.46967 -13.41133 -13.26444 -12.96234 -12.84838 -12.63253 -12.41670 -12.25142 -12.01741 -11.78488 -11.64988 -11.59906 -11.03675 -10.58165 -10.05999 -9.77118 -9.53332 -9.19426 -8.66243 -8.08923 -6.25800 0.48042 0.56893 1.35383 1.38024 1.47108 1.79432 2.21799 2.42326 2.93440 3.04221 3.15434 3.86294 4.12583 4.13531 4.19026 4.25384 4.33842 4.41585 4.61420 4.64809 4.66405 4.73925 4.75554 4.79282 4.94211 5.08873 5.12757 5.16296 5.20018 5.24997 5.37382 5.42637 5.57265 5.66476 5.72294 5.82554 6.00510 6.15690 6.18624 6.46157 6.72476 6.85693 7.17533 7.40969 7.92188 8.92576 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.008776 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.476159 B = 3189.756874 C = 4771.330797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.044 0.956 9 C 0.292 3.708 10 N -0.572 5.572 11 C 0.153 3.847 12 C -0.125 4.125 13 C -0.113 4.113 14 C -0.120 4.120 15 C -0.107 4.107 16 C -0.139 4.139 17 C 0.624 3.376 18 N -0.656 5.656 19 C 0.081 3.919 20 C -0.126 4.126 21 C -0.131 4.131 22 C 0.145 3.855 23 N -0.796 5.796 24 H 0.264 0.736 25 H 0.018 0.982 26 H -0.002 1.002 27 H 0.096 0.904 28 H 0.143 0.857 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.032 0.968 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.101 0.899 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.471 -14.544 2.416 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.190 4.190 3 Si 0.784 3.216 4 H -0.205 1.205 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.062 0.938 9 C 0.170 3.830 10 N -0.290 5.290 11 C 0.062 3.938 12 C -0.145 4.145 13 C -0.132 4.132 14 C -0.138 4.138 15 C -0.126 4.126 16 C -0.159 4.159 17 C 0.261 3.739 18 N -0.390 5.390 19 C -0.050 4.050 20 C -0.165 4.165 21 C -0.170 4.170 22 C 0.020 3.980 23 N -0.450 5.450 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.016 0.984 27 H 0.114 0.886 28 H 0.161 0.839 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.119 0.881 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 10.813 -13.615 2.018 17.503 hybrid contribution 0.268 0.598 -0.203 0.686 sum 11.081 -13.017 1.815 17.190 Atomic orbital electron populations 1.70058 1.07348 1.27678 1.51925 1.25736 0.95690 1.02485 0.95070 0.85546 0.78717 0.79230 0.78089 1.20542 1.20194 1.19195 1.21586 0.92641 0.91906 1.49680 0.93788 1.18572 0.86824 0.82490 0.95077 1.44341 1.47909 1.35662 1.01112 1.17728 0.94171 0.94486 0.87452 1.21457 0.96586 0.99375 0.97080 1.21298 1.00772 0.96995 0.94107 1.21480 0.95144 0.96472 1.00680 1.21306 0.96901 1.00271 0.94104 1.21529 0.99965 0.96924 0.97455 1.18654 0.85020 0.84219 0.85974 1.72667 1.33351 1.34710 0.98316 1.21746 0.95227 0.96886 0.91120 1.21640 0.94962 0.98734 1.01129 1.21701 1.00031 0.99605 0.95695 1.20960 0.82806 1.00267 0.93942 1.44600 1.11159 1.10376 1.78839 0.92715 0.96432 0.98427 0.88614 0.83925 0.82606 0.83059 0.86831 0.92235 0.93412 0.94925 0.90057 0.89532 0.90640 0.95008 0.88097 0.76316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.96 46.56 29.54 68.60 2.03 48.59 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.52 -30.84 9.39 25.60 0.24 -30.60 16 8 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 9 C 0.29 16.43 5.18 85.63 0.44 16.88 16 10 N -0.57 -26.17 2.56 -522.61 -1.34 -27.51 16 11 C 0.15 5.87 4.45 38.17 0.17 6.04 16 12 C -0.13 -4.45 9.97 22.40 0.22 -4.23 16 13 C -0.11 -3.01 10.04 22.25 0.22 -2.79 16 14 C -0.12 -2.66 10.04 22.29 0.22 -2.44 16 15 C -0.11 -2.60 10.04 22.25 0.22 -2.37 16 16 C -0.14 -4.47 9.97 22.40 0.22 -4.24 16 17 C 0.62 26.20 7.37 260.81 1.92 28.12 16 18 N -0.66 -30.22 9.38 -348.65 -3.27 -33.49 16 19 C 0.08 2.91 6.37 86.01 0.55 3.46 16 20 C -0.13 -3.79 5.74 30.31 0.17 -3.61 16 21 C -0.13 -3.03 5.63 29.99 0.17 -2.86 16 22 C 0.15 3.79 6.57 85.76 0.56 4.36 16 23 N -0.80 -24.76 4.17 -351.10 -1.46 -26.22 16 24 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 25 H 0.02 1.11 7.32 -2.38 -0.02 1.09 16 26 H 0.00 -0.14 8.05 -2.39 -0.02 -0.15 16 27 H 0.10 3.82 8.06 -2.91 -0.02 3.79 16 28 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.11 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.57 7.70 -2.39 -0.02 1.55 16 34 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.07 1.54 8.01 -2.39 -0.02 1.52 16 38 H 0.03 1.01 8.05 -2.39 -0.02 0.99 16 39 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.40 10.88 8.96 -92.71 -0.83 10.05 16 Total: -1.00 -72.04 331.64 2.24 -69.80 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.19 Total: 19.69 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.81 Total: 6.66 kcal Atomic # 7 Polarization: -138.96 SS G_CDS: -5.79 Total: -144.75 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -72.04 2.24 -69.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697697190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.538 kcal (2) G-P(sol) polarization free energy of solvation -72.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds