Wall clock time and date at job start Mon Mar 30 2020 08:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00116 * 2 1 4 4 H 1.48492 * 109.47559 * 269.99748 * 3 2 1 5 5 H 1.48504 * 109.47296 * 30.00047 * 3 2 1 6 6 H 1.48509 * 109.47000 * 149.99553 * 3 2 1 7 7 C 1.37877 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47483 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47240 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47230 * 179.97438 * 12 11 10 14 14 C 1.42898 * 114.00186 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.63045 * 54.60691 * 16 15 14 18 18 C 1.53254 * 109.63493 * 175.00026 * 16 15 14 19 19 N 1.46468 * 109.85980 * 181.71167 * 18 16 15 20 20 C 1.46472 * 112.55671 * 287.34210 * 19 18 16 21 21 C 1.53247 * 109.85891 * 72.66007 * 20 19 18 22 22 S 1.81894 * 109.63193 * 294.01652 * 16 15 14 23 23 H 0.97002 * 119.99746 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46959 * 59.99969 * 9 7 2 25 25 H 1.09000 * 109.47374 * 299.99789 * 9 7 2 26 26 H 1.08998 * 109.47228 * 59.99699 * 10 9 7 27 27 H 1.09000 * 109.46829 * 300.00292 * 10 9 7 28 28 H 1.08998 * 109.47267 * 59.99561 * 11 10 9 29 29 H 1.09000 * 109.47194 * 299.99906 * 11 10 9 30 30 H 1.09001 * 109.47081 * 60.00049 * 12 11 10 31 31 H 1.08999 * 109.47384 * 299.99741 * 12 11 10 32 32 H 1.09002 * 109.47259 * 300.00293 * 14 13 12 33 33 H 1.09001 * 109.47074 * 60.00315 * 14 13 12 34 34 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 35 35 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 36 36 H 1.09000 * 109.40328 * 301.82788 * 18 16 15 37 37 H 1.08994 * 109.40642 * 61.66884 * 18 16 15 38 38 H 1.00900 * 110.99893 * 162.23380 * 19 18 16 39 39 H 1.09002 * 109.40428 * 192.78115 * 20 19 18 40 40 H 1.09003 * 109.40577 * 312.54017 * 20 19 18 41 41 H 1.08992 * 109.63294 * 57.70351 * 21 20 19 42 42 H 1.09006 * 109.62856 * 178.09599 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 8 1.7598 -7.3876 0.0005 14 6 2.5997 -8.5437 0.0005 15 6 1.7325 -9.8041 -0.0001 16 6 2.6317 -11.0419 0.0005 17 1 3.3274 -10.9887 0.8380 18 6 1.7709 -12.3037 0.1257 19 7 2.6294 -13.4896 0.1678 20 6 3.2267 -13.7974 -1.1337 21 6 4.3199 -12.7742 -1.4599 22 16 3.5561 -11.1265 -1.5637 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 0.8538 -5.0446 -0.8903 29 1 0.8532 -5.0451 0.8896 30 1 3.1004 -6.0923 0.8910 31 1 3.1017 -6.0923 -0.8890 32 1 3.2290 -8.5356 -0.8894 33 1 3.2290 -8.5356 0.8906 34 1 1.1029 -9.8124 0.8896 35 1 1.1035 -9.8120 -0.8903 36 1 1.1815 -12.2506 1.0410 37 1 1.1021 -12.3724 -0.7322 38 1 2.1287 -14.2857 0.5333 39 1 3.6623 -14.7962 -1.1052 40 1 2.4558 -13.7616 -1.9035 41 1 5.0733 -12.7796 -0.6723 42 1 4.7847 -13.0263 -2.4131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720024447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:52 Heat of formation + Delta-G solvation = -77.041450 kcal Electronic energy + Delta-G solvation = -18130.858776 eV Core-core repulsion = 15235.799669 eV Total energy + Delta-G solvation = -2895.059107 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.33519 -37.68584 -34.92954 -33.97351 -32.24791 -30.61617 -28.89703 -27.54809 -24.70214 -23.60894 -21.99846 -21.75915 -21.44817 -19.96958 -17.64402 -16.70433 -16.24191 -16.16345 -16.13153 -15.58380 -14.90931 -14.59143 -14.39498 -14.19093 -13.88424 -13.45409 -13.09467 -12.72476 -12.65259 -12.32942 -12.12564 -11.77773 -11.62369 -11.42219 -11.07657 -11.03364 -10.96206 -10.62031 -10.49656 -10.35520 -9.98744 -9.62699 -9.39672 -9.27080 -9.18547 -9.00449 -8.30177 -7.98992 -5.95247 -3.97471 1.38767 2.16799 3.34994 3.36305 3.40869 3.44475 3.79003 4.33157 4.38148 4.50050 4.65511 4.70093 4.78073 4.81491 4.95267 5.13669 5.15063 5.20992 5.33389 5.39785 5.39966 5.41548 5.45044 5.59954 5.80580 5.83109 5.87152 6.17059 6.21196 6.34692 6.53246 6.68765 6.83715 6.97188 7.14962 7.42076 7.73648 7.89008 8.05728 8.48104 9.09875 9.66147 11.16133 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.060250 B = 0.002152 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.615011 B =13007.513797 C =13285.913602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.064 3.936 13 O -0.391 6.391 14 C 0.062 3.938 15 C -0.100 4.100 16 C -0.041 4.041 17 H 0.098 0.902 18 C 0.062 3.938 19 N -0.703 5.703 20 C 0.058 3.942 21 C -0.084 4.084 22 S -0.259 6.259 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.353 0.647 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 -30.591 -0.591 31.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.012 4.012 13 O -0.310 6.310 14 C -0.015 4.015 15 C -0.139 4.139 16 C -0.170 4.170 17 H 0.116 0.884 18 C -0.069 4.069 19 N -0.336 5.336 20 C -0.073 4.073 21 C -0.233 4.233 22 S -0.033 6.033 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.173 0.827 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.150 -29.368 -1.212 30.030 hybrid contribution 0.010 -0.281 0.479 0.555 sum 6.161 -29.649 -0.733 30.291 Atomic orbital electron populations 1.69973 1.06042 1.26519 1.50982 1.25043 0.94867 0.99261 0.95441 0.86592 0.79824 0.83500 0.78064 1.20691 1.21250 1.19910 1.21278 0.93033 0.91154 1.50370 0.92716 1.19093 0.94007 0.91190 0.97321 1.21577 0.99185 0.93474 1.00315 1.21635 0.98093 0.92931 1.02708 1.22683 0.95364 0.83404 0.99723 1.87853 1.34043 1.13675 1.95451 1.22415 0.93009 0.85518 1.00552 1.21329 0.97690 0.90510 1.04393 1.23220 0.99448 0.97188 0.97172 0.88388 1.22121 0.93447 0.88924 1.02377 1.59450 1.39694 1.07868 1.26563 1.22059 0.96526 0.98495 0.90247 1.23531 1.00167 0.93946 1.05638 1.87234 1.63483 1.23481 1.29073 0.93047 0.96537 0.96531 0.93340 0.93324 0.91708 0.91742 0.93670 0.93590 0.92708 0.93498 0.89516 0.90034 0.89422 0.93237 0.82727 0.89789 0.93480 0.89146 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.12 -2.14 5.58 -26.74 -0.15 -2.29 16 12 C 0.06 1.02 5.94 37.16 0.22 1.24 16 13 O -0.39 -6.05 10.34 -35.23 -0.36 -6.41 16 14 C 0.06 0.75 5.78 37.16 0.21 0.97 16 15 C -0.10 -0.98 5.06 -26.74 -0.14 -1.11 16 16 C -0.04 -0.35 2.76 -26.60 -0.07 -0.42 16 17 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 18 C 0.06 0.42 5.69 -3.93 -0.02 0.39 16 19 N -0.70 -4.20 6.58 -114.14 -0.75 -4.95 16 20 C 0.06 0.32 6.39 -3.93 -0.03 0.30 16 21 C -0.08 -0.58 6.69 37.29 0.25 -0.33 16 22 S -0.26 -2.52 20.65 -107.50 -2.22 -4.74 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.69 7.19 -51.93 -0.37 0.31 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.35 7.91 -51.93 -0.41 -0.06 16 38 H 0.35 1.42 8.89 -39.29 -0.35 1.07 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 0.29 7.91 -51.93 -0.41 -0.12 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -31.92 348.53 -10.63 -42.55 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -7.85 Total: -4.72 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.41 Total: -17.22 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: -0.01 Total: -31.76 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.36 Total: -6.41 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.22 Total: -4.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.92 -10.63 -42.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720024447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.495 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds