Wall clock time and date at job start Mon Mar 30 2020 08:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00116 * 2 1 4 4 H 1.48492 * 109.47559 * 269.99748 * 3 2 1 5 5 H 1.48504 * 109.47296 * 30.00047 * 3 2 1 6 6 H 1.48509 * 109.47000 * 149.99553 * 3 2 1 7 7 C 1.37877 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47483 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47240 * 180.02562 * 11 10 9 13 13 O 1.42902 * 109.47230 * 179.97438 * 12 11 10 14 14 C 1.42898 * 114.00186 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.52992 * 109.47482 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.63045 * 54.60691 * 16 15 14 18 18 C 1.53254 * 109.63493 * 175.00026 * 16 15 14 19 19 N 1.46468 * 109.85980 * 181.71167 * 18 16 15 20 20 C 1.46472 * 112.55671 * 287.34210 * 19 18 16 21 21 C 1.53247 * 109.85891 * 72.66007 * 20 19 18 22 22 S 1.81894 * 109.63193 * 294.01652 * 16 15 14 23 23 H 0.97002 * 119.99746 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46959 * 59.99969 * 9 7 2 25 25 H 1.09000 * 109.47374 * 299.99789 * 9 7 2 26 26 H 1.08998 * 109.47228 * 59.99699 * 10 9 7 27 27 H 1.09000 * 109.46829 * 300.00292 * 10 9 7 28 28 H 1.08998 * 109.47267 * 59.99561 * 11 10 9 29 29 H 1.09000 * 109.47194 * 299.99906 * 11 10 9 30 30 H 1.09001 * 109.47081 * 60.00049 * 12 11 10 31 31 H 1.08999 * 109.47384 * 299.99741 * 12 11 10 32 32 H 1.09002 * 109.47259 * 300.00293 * 14 13 12 33 33 H 1.09001 * 109.47074 * 60.00315 * 14 13 12 34 34 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 35 35 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 36 36 H 1.09000 * 109.40328 * 301.82788 * 18 16 15 37 37 H 1.08994 * 109.40642 * 61.66884 * 18 16 15 38 38 H 1.00900 * 110.99893 * 162.23380 * 19 18 16 39 39 H 1.09002 * 109.40428 * 192.78115 * 20 19 18 40 40 H 1.09003 * 109.40577 * 312.54017 * 20 19 18 41 41 H 1.08992 * 109.63294 * 57.70351 * 21 20 19 42 42 H 1.09006 * 109.62856 * 178.09599 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4744 -6.1500 0.0005 13 8 1.7598 -7.3876 0.0005 14 6 2.5997 -8.5437 0.0005 15 6 1.7325 -9.8041 -0.0001 16 6 2.6317 -11.0419 0.0005 17 1 3.3274 -10.9887 0.8380 18 6 1.7709 -12.3037 0.1257 19 7 2.6294 -13.4896 0.1678 20 6 3.2267 -13.7974 -1.1337 21 6 4.3199 -12.7742 -1.4599 22 16 3.5561 -11.1265 -1.5637 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 0.8538 -5.0446 -0.8903 29 1 0.8532 -5.0451 0.8896 30 1 3.1004 -6.0923 0.8910 31 1 3.1017 -6.0923 -0.8890 32 1 3.2290 -8.5356 -0.8894 33 1 3.2290 -8.5356 0.8906 34 1 1.1029 -9.8124 0.8896 35 1 1.1035 -9.8120 -0.8903 36 1 1.1815 -12.2506 1.0410 37 1 1.1021 -12.3724 -0.7322 38 1 2.1287 -14.2857 0.5333 39 1 3.6623 -14.7962 -1.1052 40 1 2.4558 -13.7616 -1.9035 41 1 5.0733 -12.7796 -0.6723 42 1 4.7847 -13.0263 -2.4131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720024447.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:03:51 Heat of formation + Delta-G solvation = -97.152771 kcal Electronic energy + Delta-G solvation = -18131.730868 eV Core-core repulsion = 15235.799669 eV Total energy + Delta-G solvation = -2895.931199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.33118 -38.37619 -36.52535 -35.09054 -34.14122 -31.31286 -30.45750 -28.50630 -26.50024 -24.37458 -23.42068 -22.59843 -22.23998 -21.69874 -18.44013 -18.28119 -17.58505 -17.27565 -16.92981 -16.52102 -16.33339 -15.92640 -15.48968 -15.07828 -14.78804 -14.51931 -14.14382 -13.94626 -13.76509 -13.57519 -13.24871 -13.01779 -12.83679 -12.71236 -12.63364 -12.34440 -12.27893 -12.07599 -11.91128 -11.64006 -11.44406 -11.32959 -11.08687 -10.69497 -10.55575 -10.49319 -9.65242 -8.72943 -8.19746 -6.31369 0.74449 1.40143 1.42143 1.53270 1.54984 2.40436 2.54238 3.11471 3.12956 3.67585 3.87017 3.96695 4.04219 4.06657 4.13524 4.21566 4.25081 4.36114 4.40695 4.45004 4.49659 4.59225 4.62204 4.67680 4.74195 4.75591 4.87307 4.89274 4.96970 5.08007 5.16374 5.24894 5.28564 5.53139 5.75271 5.85744 5.87539 6.23946 6.26218 6.35709 6.85885 7.37817 8.92310 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.060250 B = 0.002152 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.615011 B =13007.513797 C =13285.913602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.095 4.095 11 C -0.109 4.109 12 C 0.072 3.928 13 O -0.408 6.408 14 C 0.060 3.940 15 C -0.094 4.094 16 C -0.027 4.027 17 H 0.096 0.904 18 C 0.065 3.935 19 N -0.707 5.707 20 C 0.059 3.941 21 C -0.072 4.072 22 S -0.319 6.319 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.009 1.009 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.044 0.956 38 H 0.366 0.634 39 H 0.107 0.893 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 -31.697 -0.108 32.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.147 4.147 12 C -0.004 4.004 13 O -0.328 6.328 14 C -0.017 4.017 15 C -0.133 4.133 16 C -0.156 4.156 17 H 0.114 0.886 18 C -0.066 4.066 19 N -0.341 5.341 20 C -0.072 4.072 21 C -0.220 4.220 22 S -0.093 6.093 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.062 0.938 38 H 0.187 0.813 39 H 0.125 0.875 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.553 -30.506 -0.725 31.435 hybrid contribution -0.440 -0.001 0.323 0.546 sum 7.114 -30.507 -0.402 31.328 Atomic orbital electron populations 1.70113 1.07882 1.27791 1.51698 1.26056 0.95844 1.03594 0.94747 0.85393 0.78635 0.78165 0.78516 1.19737 1.20698 1.18605 1.21729 0.93648 0.92361 1.50496 0.91971 1.19025 0.94513 0.93203 0.94792 1.21361 0.98065 0.92816 1.01018 1.21456 0.98274 0.92892 1.02032 1.22485 0.94354 0.82805 1.00777 1.87813 1.35138 1.14274 1.95590 1.22582 0.93227 0.85093 1.00771 1.21280 0.97545 0.90045 1.04405 1.23142 0.99092 0.97490 0.95868 0.88566 1.22065 0.93141 0.88480 1.02883 1.59424 1.39744 1.08149 1.26761 1.22074 0.96057 0.99062 0.89976 1.23601 1.00288 0.91850 1.06291 1.87414 1.64501 1.26734 1.30658 0.92765 0.99195 0.99029 0.92428 0.92648 0.92617 0.92287 0.92278 0.92855 0.93285 0.92419 0.88444 0.91009 0.87949 0.93761 0.81292 0.87501 0.93955 0.89235 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 2 C 0.00 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.20 4.97 29.85 0.15 1.34 16 10 C -0.09 -4.04 5.15 30.59 0.16 -3.88 16 11 C -0.11 -4.01 5.58 30.59 0.17 -3.84 16 12 C 0.07 2.19 5.94 71.98 0.43 2.62 16 13 O -0.41 -12.31 10.34 -148.98 -1.54 -13.85 16 14 C 0.06 1.40 5.78 71.98 0.42 1.81 16 15 C -0.09 -1.75 5.06 30.59 0.15 -1.60 16 16 C -0.03 -0.43 2.76 30.68 0.08 -0.34 16 17 H 0.10 1.57 8.14 -2.38 -0.02 1.56 16 18 C 0.07 0.77 5.69 86.47 0.49 1.26 16 19 N -0.71 -6.93 6.58 -515.02 -3.39 -10.32 16 20 C 0.06 0.54 6.39 86.47 0.55 1.09 16 21 C -0.07 -0.89 6.69 72.06 0.48 -0.40 16 22 S -0.32 -6.07 20.65 -56.49 -1.17 -7.23 16 23 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.21 7.19 -2.39 -0.02 1.19 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 0.58 7.91 -2.39 -0.02 0.56 16 38 H 0.37 2.05 8.89 -89.69 -0.80 1.25 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.04 0.45 7.91 -2.39 -0.02 0.43 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -68.68 348.53 0.16 -68.52 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.16 Total: 7.30 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 3.78 Total: -33.45 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -3.10 Total: -68.45 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.54 Total: -13.85 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Atomic # 16 Polarization: -6.07 SS G_CDS: -1.17 Total: -7.23 kcal Total: -68.68 0.16 -68.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720024447.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.630 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds