Wall clock time and date at job start Mon Mar 30 2020 07:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81398 * 102.99966 * 2 1 4 4 H 1.08998 * 109.56889 * 55.24182 * 3 2 1 5 5 C 1.54523 * 109.57114 * 294.99941 * 3 2 1 6 6 C 1.45871 * 111.67426 * 162.81933 * 5 3 2 7 7 C 1.53983 * 112.66327 * 61.49563 * 6 5 3 8 8 N 1.44300 * 108.32032 * 278.60028 * 7 6 5 9 9 C 1.46897 * 111.00468 * 221.34766 * 8 7 6 10 10 C 1.53006 * 109.46573 * 66.04526 * 9 8 7 11 11 O 1.42901 * 109.46804 * 65.00294 * 10 9 8 12 12 C 1.42899 * 113.99607 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46876 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.47949 * 113.64643 * 95.39013 * 8 7 6 22 22 C 1.50526 * 109.67544 * 175.55815 * 3 2 1 23 23 H 1.09006 * 109.46900 * 60.00678 * 1 2 3 24 24 H 1.09009 * 109.46742 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47522 * 299.99980 * 1 2 3 26 26 H 1.08997 * 109.03929 * 42.25193 * 5 3 2 27 27 H 1.08997 * 109.03853 * 283.38695 * 5 3 2 28 28 H 1.09001 * 108.84668 * 300.67837 * 6 5 3 29 29 H 1.08999 * 108.84506 * 182.32277 * 6 5 3 30 30 H 1.09008 * 109.69366 * 158.89178 * 7 6 5 31 31 H 1.08996 * 109.72731 * 38.33328 * 7 6 5 32 32 H 1.08997 * 109.47142 * 306.05052 * 9 8 7 33 33 H 1.08995 * 109.47294 * 186.04659 * 9 8 7 34 34 H 1.08995 * 109.47721 * 304.99997 * 10 9 8 35 35 H 1.09001 * 109.46499 * 184.99873 * 10 9 8 36 36 H 1.09004 * 109.47206 * 60.00168 * 12 11 10 37 37 H 1.08994 * 109.47548 * 299.99825 * 12 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 39 39 H 1.09004 * 108.70825 * 79.14100 * 21 8 7 40 40 H 1.09001 * 108.70939 * 197.14092 * 21 8 7 41 41 H 1.09002 * 108.79138 * 332.51371 * 22 3 2 42 42 H 1.08999 * 108.79385 * 90.73499 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7337 2.2549 0.8438 5 6 1.7390 2.4103 -1.3196 6 6 1.6701 3.8637 -1.2172 7 6 3.0400 4.5036 -0.9257 8 7 3.2961 4.4017 0.4907 9 6 3.8918 5.6406 1.0086 10 6 2.8742 6.7784 0.9035 11 8 1.7643 6.5053 1.7611 12 6 0.7507 7.5124 1.7383 13 6 -0.3653 7.1232 2.6733 14 1 -0.3062 6.1994 3.2296 15 6 -1.4588 7.9495 2.8232 16 7 -1.5305 9.0746 2.1460 17 14 -2.8385 7.4707 3.9879 18 1 -2.5550 8.0136 5.3408 19 1 -4.1221 8.0274 3.4902 20 1 -2.9353 5.9906 4.0589 21 6 4.1120 3.2250 0.8631 22 6 3.7130 1.9434 0.1098 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 0.7492 2.0235 -1.5619 27 1 2.4295 2.1424 -2.1192 28 1 0.9805 4.1280 -0.4155 29 1 1.2865 4.2649 -2.1553 30 1 3.0260 5.5526 -1.2220 31 1 3.8175 3.9763 -1.4785 32 1 4.7773 5.8900 0.4239 33 1 4.1731 5.4999 2.0521 34 1 2.5262 6.8608 -0.1261 35 1 3.3441 7.7148 1.2043 36 1 0.3586 7.6104 0.7260 37 1 1.1766 8.4639 2.0566 38 1 -2.3001 9.6558 2.2512 39 1 5.1585 3.4440 0.6510 40 1 4.0043 3.0495 1.9335 41 1 4.1304 1.0838 0.6341 42 1 4.1371 1.9797 -0.8937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385329310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:59 Heat of formation + Delta-G solvation = -53.018499 kcal Electronic energy + Delta-G solvation = -19838.435115 eV Core-core repulsion = 16944.417722 eV Total energy + Delta-G solvation = -2894.017393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.150 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.23852 -36.65455 -34.62069 -32.66956 -32.35481 -29.50397 -28.85406 -26.92540 -25.58370 -25.14357 -22.28299 -21.47901 -20.58603 -19.68910 -16.85714 -16.39931 -16.03970 -15.69835 -15.29308 -14.66808 -14.55201 -14.33643 -14.16321 -13.72042 -13.59347 -13.28968 -13.16362 -12.88597 -12.77906 -12.29234 -11.93070 -11.61018 -11.37499 -11.16882 -10.98313 -10.85968 -10.79808 -10.70306 -10.53393 -10.45671 -10.32594 -9.94245 -9.76333 -9.05320 -8.75798 -8.09777 -7.93370 -7.71393 -6.08047 -4.08771 1.70694 2.55418 3.31514 3.36542 3.42046 3.96841 4.37502 4.54741 4.74527 4.88840 5.02970 5.06561 5.12648 5.15121 5.18844 5.28562 5.33109 5.47002 5.55537 5.61164 5.61939 5.67993 5.78086 5.81714 5.90321 6.01784 6.06176 6.11089 6.14806 6.18962 6.26990 6.32695 6.63764 7.14683 7.29704 7.47145 7.48019 7.83838 8.20715 8.66322 9.06281 9.56021 11.03644 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.004850 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.620890 B = 5772.132118 C = 6903.428990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.286 6.286 3 C -0.037 4.037 4 H 0.105 0.895 5 C -0.101 4.101 6 C -0.119 4.119 7 C 0.064 3.936 8 N -0.536 5.536 9 C 0.066 3.934 10 C 0.066 3.934 11 O -0.379 6.379 12 C 0.195 3.805 13 C -0.509 4.509 14 H 0.066 0.934 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.070 3.930 22 C -0.097 4.097 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.002 0.998 37 H 0.001 0.999 38 H 0.263 0.737 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.912 -13.638 -7.478 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.057 6.057 3 C -0.165 4.165 4 H 0.123 0.877 5 C -0.140 4.140 6 C -0.159 4.159 7 C -0.065 4.065 8 N -0.261 5.261 9 C -0.062 4.062 10 C -0.012 4.012 11 O -0.298 6.298 12 C 0.120 3.880 13 C -0.547 4.547 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.540 5.540 17 Si 0.733 3.267 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.059 4.059 22 C -0.136 4.136 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.004 -14.638 -7.169 19.125 hybrid contribution -0.895 1.305 -0.009 1.582 sum 9.110 -13.333 -7.178 17.671 Atomic orbital electron populations 1.23375 0.93901 1.05956 1.05365 1.86611 1.07980 1.13160 1.97987 1.22968 0.99727 0.91477 1.02363 0.87667 1.20814 1.01209 0.96457 0.95528 1.20514 0.98475 0.94424 1.02440 1.21807 0.96344 1.00482 0.87856 1.60574 1.49129 1.02081 1.14277 1.22101 0.94320 0.89250 1.00501 1.22312 0.89354 0.95063 0.94479 1.87942 1.30118 1.48173 1.63589 1.20156 0.85242 0.86249 0.96330 1.21055 1.02401 1.06717 1.24566 0.91604 1.24938 0.98376 0.94828 0.96382 1.69967 1.30576 1.11726 1.41704 0.86374 0.80809 0.78850 0.80684 1.20501 1.21143 1.19657 1.22326 0.94043 0.89172 1.00328 1.21168 0.93567 0.97576 1.01335 0.90424 0.88550 0.90194 0.92242 0.91996 0.89819 0.92123 0.91114 0.94554 0.94477 0.90245 0.94536 0.94424 0.97995 0.98121 0.92760 0.94962 0.90684 0.90616 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.45 101.05 1.06 -0.14 16 2 S -0.29 -3.42 21.51 -107.50 -2.31 -5.73 16 3 C -0.04 -0.45 2.35 -27.17 -0.06 -0.52 16 4 H 0.11 1.55 7.79 -51.93 -0.40 1.14 16 5 C -0.10 -1.18 4.72 -29.30 -0.14 -1.32 16 6 C -0.12 -1.58 5.37 -29.59 -0.16 -1.74 16 7 C 0.06 0.83 5.07 -4.70 -0.02 0.81 16 8 N -0.54 -7.69 3.95 -234.63 -0.93 -8.61 16 9 C 0.07 0.96 5.20 -3.82 -0.02 0.94 16 10 C 0.07 1.21 5.98 37.16 0.22 1.43 16 11 O -0.38 -9.12 10.27 -35.23 -0.36 -9.49 16 12 C 0.19 5.36 5.69 36.01 0.20 5.57 16 13 C -0.51 -15.07 9.43 -34.44 -0.32 -15.40 16 14 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 17 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.07 0.84 5.38 -2.77 -0.01 0.82 16 22 C -0.10 -1.08 4.84 -27.49 -0.13 -1.21 16 23 H 0.08 0.75 6.83 -51.92 -0.35 0.39 16 24 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.68 6.39 -51.93 -0.33 0.35 16 27 H 0.06 0.67 7.59 -51.93 -0.39 0.28 16 28 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.95 5.86 -51.92 -0.30 0.65 16 31 H 0.04 0.42 6.79 -51.93 -0.35 0.07 16 32 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 34 H 0.04 0.66 6.28 -51.93 -0.33 0.33 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.03 0.34 8.02 -51.93 -0.42 -0.07 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.81 7.68 -51.93 -0.40 0.41 16 42 H 0.06 0.68 6.66 -51.93 -0.35 0.34 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -30.97 337.07 -9.69 -40.66 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -7.39 Total: -3.32 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 0.51 Total: -9.24 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.19 Total: -34.95 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.36 Total: -9.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -2.31 Total: -5.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.97 -9.69 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385329310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.354 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds