Wall clock time and date at job start Mon Mar 30 2020 07:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48506 * 109.46907 * 240.00000 * 3 2 1 5 5 H 1.48497 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47306 * 120.00276 * 3 2 1 7 7 C 1.37884 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99869 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.81757 * 56.66768 * 9 7 2 11 11 C 1.54882 * 110.75918 * 293.32699 * 9 7 2 12 12 C 1.54268 * 104.19992 * 203.74378 * 11 9 7 13 13 C 1.53876 * 106.59607 * 23.60931 * 12 11 9 14 14 H 1.08998 * 110.03805 * 240.71854 * 13 12 11 15 15 N 1.46901 * 110.03578 * 119.28576 * 13 12 11 16 16 C 1.46894 * 111.00108 * 87.83115 * 15 13 12 17 17 C 1.53779 * 113.61604 * 254.14065 * 16 15 13 18 18 C 1.53951 * 87.02006 * 220.04598 * 17 16 15 19 19 C 1.52999 * 113.54055 * 270.81163 * 18 17 16 20 20 F 1.39906 * 109.46840 * 277.49576 * 19 18 17 21 21 C 1.53012 * 113.74308 * 139.94063 * 18 17 16 22 22 F 1.39904 * 109.46906 * 82.40351 * 21 18 17 23 23 C 1.53780 * 87.11315 * 25.36533 * 18 17 16 24 24 C 1.54268 * 106.59992 * 0.02562 * 13 12 11 25 25 H 0.97007 * 119.99881 * 0.02562 * 1 2 3 26 26 H 1.09003 * 110.48391 * 322.42126 * 11 9 7 27 27 H 1.09004 * 110.48801 * 85.06667 * 11 9 7 28 28 H 1.08994 * 110.03288 * 264.32894 * 12 11 9 29 29 H 1.08998 * 110.03249 * 142.88896 * 12 11 9 30 30 H 1.00909 * 110.99690 * 323.88002 * 15 13 12 31 31 H 1.09006 * 112.84863 * 25.33688 * 16 15 13 32 32 H 1.08998 * 113.61565 * 334.56863 * 17 16 15 33 33 H 1.08999 * 113.61567 * 105.47012 * 17 16 15 34 34 H 1.09003 * 109.47022 * 37.49252 * 19 18 17 35 35 H 1.08994 * 109.47021 * 157.49867 * 19 18 17 36 36 H 1.08991 * 109.46801 * 202.40224 * 21 18 17 37 37 H 1.08999 * 109.46915 * 322.40491 * 21 18 17 38 38 H 1.08996 * 113.61374 * 220.09480 * 23 18 17 39 39 H 1.08996 * 113.69664 * 89.19595 * 23 18 17 40 40 H 1.08999 * 110.49069 * 217.71506 * 24 13 12 41 41 H 1.08996 * 110.48777 * 95.06810 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5727 -2.5548 -0.8510 11 6 0.4792 -2.6875 1.3302 12 6 0.2959 -4.2147 1.4483 13 6 1.4096 -4.8577 0.6032 14 1 0.9732 -5.4595 -0.1939 15 7 2.2675 -5.6936 1.4535 16 6 1.7374 -7.0598 1.5548 17 6 1.0847 -7.3683 2.9125 18 6 1.7451 -8.7561 2.8241 19 6 0.8812 -9.7998 2.1132 20 9 -0.0465 -10.3304 3.0161 21 6 2.3065 -9.2573 4.1563 22 9 1.2761 -9.8270 4.9119 23 6 2.8027 -8.1090 1.9145 24 6 2.2311 -3.6988 0.0016 25 1 -0.4850 0.8401 -0.0004 26 1 1.0642 -2.3076 2.1678 27 1 -0.4893 -2.1895 1.2830 28 1 -0.6809 -4.5045 1.0613 29 1 0.3921 -4.5229 2.4893 30 1 2.3823 -5.2816 2.3675 31 1 1.1207 -7.3389 0.7003 32 1 1.4651 -6.7549 3.7293 33 1 -0.0043 -7.3989 2.8766 34 1 0.3529 -9.3300 1.2835 35 1 1.5167 -10.5996 1.7332 36 1 3.0756 -10.0062 3.9677 37 1 2.7402 -8.4214 4.7053 38 1 3.0986 -8.7366 1.0739 39 1 3.6545 -7.6982 2.4565 40 1 2.5410 -3.9386 -1.0155 41 1 3.0989 -3.4826 0.6248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595039708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:06 Heat of formation + Delta-G solvation = -101.518376 kcal Electronic energy + Delta-G solvation = -21521.657748 eV Core-core repulsion = 18071.696855 eV Total energy + Delta-G solvation = -3449.960892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.160 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.02741 -47.29021 -39.85686 -37.37078 -33.52477 -31.77679 -28.81553 -28.02894 -27.01443 -26.02172 -25.94652 -23.56775 -21.58148 -19.71479 -19.18889 -18.77965 -16.74291 -16.45879 -16.33128 -16.23635 -15.52640 -15.51153 -14.93769 -14.64160 -14.57173 -14.22302 -13.66889 -13.22667 -12.95374 -12.65712 -12.45959 -12.34325 -11.93445 -11.88535 -11.43141 -11.25436 -11.18269 -10.97335 -10.74540 -10.72032 -10.53059 -10.45650 -10.29895 -9.96309 -9.78682 -9.55173 -9.07857 -8.78734 -8.34595 -8.01742 -5.98336 -4.00635 3.33387 3.38123 3.40714 3.90852 3.98410 4.17856 4.35973 4.46661 4.53849 4.78581 4.82603 4.83853 4.89867 4.97974 5.11241 5.33324 5.50235 5.51594 5.54187 5.58484 5.65338 5.68900 5.81914 5.82446 5.95849 6.04338 6.27280 6.50936 6.66234 6.73108 6.83475 7.04886 7.13150 7.33677 7.53500 7.67774 7.71727 7.91953 8.06010 8.49509 9.02420 9.63280 11.11380 Molecular weight = 273.16amu Principal moments of inertia in cm(-1) A = 0.043057 B = 0.003290 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.149247 B = 8509.057471 C = 8579.126733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.030 0.970 11 C -0.101 4.101 12 C -0.152 4.152 13 C 0.083 3.917 14 H 0.065 0.935 15 N -0.670 5.670 16 C 0.071 3.929 17 C -0.152 4.152 18 C -0.156 4.156 19 C 0.087 3.913 20 F -0.207 7.207 21 C 0.081 3.919 22 F -0.209 7.209 23 C -0.109 4.109 24 C -0.103 4.103 25 H 0.259 0.741 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.343 0.657 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -18.547 5.172 19.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.049 0.951 11 C -0.139 4.139 12 C -0.192 4.192 13 C -0.026 4.026 14 H 0.083 0.917 15 N -0.299 5.299 16 C -0.040 4.040 17 C -0.192 4.192 18 C -0.158 4.158 19 C 0.032 3.968 20 F -0.188 7.188 21 C 0.026 3.974 22 F -0.190 7.190 23 C -0.148 4.148 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.163 0.837 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.816 -18.586 4.687 19.544 hybrid contribution -0.487 1.034 0.749 1.366 sum 3.329 -17.552 5.436 18.673 Atomic orbital electron populations 1.69951 1.05900 1.26473 1.50689 1.24987 0.94815 0.98989 0.95172 0.86718 0.79634 0.83387 0.78590 1.20313 1.21414 1.20328 1.21106 0.92774 0.90533 1.50554 0.92711 1.19588 0.92584 0.91554 0.93332 0.95148 1.22285 1.01249 0.90222 1.00160 1.22966 0.98212 1.00151 0.97822 1.22417 0.92009 0.94060 0.94155 0.91690 1.60627 1.49756 1.01237 1.18329 1.23031 0.94676 0.90356 0.95983 1.23842 1.01126 0.94404 0.99796 1.23072 0.99535 0.96286 0.96871 1.21691 0.89385 0.95558 0.90166 1.92816 1.67975 1.87799 1.70201 1.21880 0.87534 0.98303 0.89724 1.92810 1.61778 1.86733 1.77702 1.23051 0.96787 0.96746 0.98189 1.22460 0.98903 0.94328 0.98426 0.93102 0.93601 0.91946 0.93285 0.93703 0.83732 0.88670 0.89333 0.90973 0.90256 0.90543 0.90853 0.90393 0.90739 0.88723 0.93590 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 12.41 55.43 0.69 -24.94 16 2 C 0.06 1.71 5.36 -17.82 -0.10 1.62 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.95 8.49 -34.44 -0.29 -14.24 16 8 H 0.05 1.48 7.77 -52.49 -0.41 1.07 16 9 C 0.05 1.18 2.73 -89.77 -0.25 0.93 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.10 -2.28 5.75 -25.07 -0.14 -2.43 16 12 C -0.15 -2.72 6.43 -25.61 -0.16 -2.89 16 13 C 0.08 1.38 3.23 -66.59 -0.22 1.17 16 14 H 0.06 1.05 7.47 -51.93 -0.39 0.66 16 15 N -0.67 -9.20 6.32 -97.72 -0.62 -9.82 16 16 C 0.07 0.77 3.76 -66.90 -0.25 0.52 16 17 C -0.15 -1.59 6.83 -25.83 -0.18 -1.76 16 18 C -0.16 -1.39 1.14 -153.60 -0.18 -1.57 16 19 C 0.09 0.77 6.87 37.16 0.26 1.03 16 20 F -0.21 -2.55 15.28 2.25 0.03 -2.52 16 21 C 0.08 0.71 7.00 37.16 0.26 0.97 16 22 F -0.21 -2.57 15.28 2.25 0.03 -2.54 16 23 C -0.11 -0.94 7.03 -25.92 -0.18 -1.12 16 24 C -0.10 -2.08 5.95 -25.05 -0.15 -2.23 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 27 H 0.06 1.56 7.63 -51.93 -0.40 1.16 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.73 7.56 -51.93 -0.39 0.34 16 30 H 0.34 4.67 7.63 -39.29 -0.30 4.37 16 31 H 0.10 1.04 7.00 -51.93 -0.36 0.68 16 32 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 33 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.08 0.64 7.34 -51.93 -0.38 0.26 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.60 7.96 -51.93 -0.41 0.18 16 38 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 39 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.27 7.94 -51.93 -0.41 0.86 16 LS Contribution 328.08 15.07 4.94 4.94 Total: -1.00 -29.14 328.08 -8.30 -37.44 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.78 Total: 1.20 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -1.58 Total: -20.00 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.07 Total: -34.77 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.07 Total: -5.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.14 -8.30 -37.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595039708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.082 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds