Wall clock time and date at job start Mon Mar 30 2020 07:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00177 * 2 1 4 4 H 1.48506 * 109.46907 * 240.00000 * 3 2 1 5 5 H 1.48497 * 109.47276 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47306 * 120.00276 * 3 2 1 7 7 C 1.37884 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99789 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99869 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.81757 * 56.66768 * 9 7 2 11 11 C 1.54882 * 110.75918 * 293.32699 * 9 7 2 12 12 C 1.54268 * 104.19992 * 203.74378 * 11 9 7 13 13 C 1.53876 * 106.59607 * 23.60931 * 12 11 9 14 14 H 1.08998 * 110.03805 * 240.71854 * 13 12 11 15 15 N 1.46901 * 110.03578 * 119.28576 * 13 12 11 16 16 C 1.46894 * 111.00108 * 87.83115 * 15 13 12 17 17 C 1.53779 * 113.61604 * 254.14065 * 16 15 13 18 18 C 1.53951 * 87.02006 * 220.04598 * 17 16 15 19 19 C 1.52999 * 113.54055 * 270.81163 * 18 17 16 20 20 F 1.39906 * 109.46840 * 277.49576 * 19 18 17 21 21 C 1.53012 * 113.74308 * 139.94063 * 18 17 16 22 22 F 1.39904 * 109.46906 * 82.40351 * 21 18 17 23 23 C 1.53780 * 87.11315 * 25.36533 * 18 17 16 24 24 C 1.54268 * 106.59992 * 0.02562 * 13 12 11 25 25 H 0.97007 * 119.99881 * 0.02562 * 1 2 3 26 26 H 1.09003 * 110.48391 * 322.42126 * 11 9 7 27 27 H 1.09004 * 110.48801 * 85.06667 * 11 9 7 28 28 H 1.08994 * 110.03288 * 264.32894 * 12 11 9 29 29 H 1.08998 * 110.03249 * 142.88896 * 12 11 9 30 30 H 1.00909 * 110.99690 * 323.88002 * 15 13 12 31 31 H 1.09006 * 112.84863 * 25.33688 * 16 15 13 32 32 H 1.08998 * 113.61565 * 334.56863 * 17 16 15 33 33 H 1.08999 * 113.61567 * 105.47012 * 17 16 15 34 34 H 1.09003 * 109.47022 * 37.49252 * 19 18 17 35 35 H 1.08994 * 109.47021 * 157.49867 * 19 18 17 36 36 H 1.08991 * 109.46801 * 202.40224 * 21 18 17 37 37 H 1.08999 * 109.46915 * 322.40491 * 21 18 17 38 38 H 1.08996 * 113.61374 * 220.09480 * 23 18 17 39 39 H 1.08996 * 113.69664 * 89.19595 * 23 18 17 40 40 H 1.08999 * 110.49069 * 217.71506 * 24 13 12 41 41 H 1.08996 * 110.48777 * 95.06810 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5727 -2.5548 -0.8510 11 6 0.4792 -2.6875 1.3302 12 6 0.2959 -4.2147 1.4483 13 6 1.4096 -4.8577 0.6032 14 1 0.9732 -5.4595 -0.1939 15 7 2.2675 -5.6936 1.4535 16 6 1.7374 -7.0598 1.5548 17 6 1.0847 -7.3683 2.9125 18 6 1.7451 -8.7561 2.8241 19 6 0.8812 -9.7998 2.1132 20 9 -0.0465 -10.3304 3.0161 21 6 2.3065 -9.2573 4.1563 22 9 1.2761 -9.8270 4.9119 23 6 2.8027 -8.1090 1.9145 24 6 2.2311 -3.6988 0.0016 25 1 -0.4850 0.8401 -0.0004 26 1 1.0642 -2.3076 2.1678 27 1 -0.4893 -2.1895 1.2830 28 1 -0.6809 -4.5045 1.0613 29 1 0.3921 -4.5229 2.4893 30 1 2.3823 -5.2816 2.3675 31 1 1.1207 -7.3389 0.7003 32 1 1.4651 -6.7549 3.7293 33 1 -0.0043 -7.3989 2.8766 34 1 0.3529 -9.3300 1.2835 35 1 1.5167 -10.5996 1.7332 36 1 3.0756 -10.0062 3.9677 37 1 2.7402 -8.4214 4.7053 38 1 3.0986 -8.7366 1.0739 39 1 3.6545 -7.6982 2.4565 40 1 2.5410 -3.9386 -1.0155 41 1 3.0989 -3.4826 0.6248 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595039708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:05 Heat of formation + Delta-G solvation = -117.781894 kcal Electronic energy + Delta-G solvation = -21522.362987 eV Core-core repulsion = 18071.696855 eV Total energy + Delta-G solvation = -3450.666131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.160 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.82680 -48.10031 -40.73941 -38.85857 -35.16205 -33.42882 -29.99299 -29.63534 -27.73040 -27.50981 -26.70314 -25.39354 -22.44842 -21.05372 -20.97745 -19.71023 -18.42298 -17.48807 -17.16140 -17.02680 -16.68581 -16.45348 -16.26616 -16.09247 -15.56159 -15.41704 -14.91871 -14.52612 -14.13068 -13.98681 -13.70616 -13.44350 -13.38000 -12.97843 -12.77514 -12.70338 -12.55082 -12.37043 -12.23631 -11.92493 -11.76315 -11.49729 -11.48539 -11.35463 -11.22337 -11.07261 -10.81151 -10.73262 -10.44385 -9.16019 -8.10306 -6.19630 1.42085 1.43202 1.50806 2.44678 3.15437 3.20373 3.25958 3.38414 3.54840 3.81996 3.95033 4.01138 4.13648 4.17793 4.20021 4.27779 4.28430 4.35417 4.40952 4.76803 4.77127 4.82192 4.85366 4.87359 4.93745 5.06102 5.08237 5.14692 5.18041 5.20402 5.27616 5.28927 5.45275 5.50644 5.66353 5.93637 6.01971 6.32569 6.42425 6.57369 6.91905 7.47818 8.98389 Molecular weight = 273.16amu Principal moments of inertia in cm(-1) A = 0.043057 B = 0.003290 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.149247 B = 8509.057471 C = 8579.126733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.036 3.964 10 H -0.002 1.002 11 C -0.094 4.094 12 C -0.139 4.139 13 C 0.098 3.902 14 H 0.076 0.924 15 N -0.668 5.668 16 C 0.064 3.936 17 C -0.156 4.156 18 C -0.147 4.147 19 C 0.077 3.923 20 F -0.229 7.229 21 C 0.072 3.928 22 F -0.231 7.231 23 C -0.093 4.093 24 C -0.093 4.093 25 H 0.259 0.741 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.345 0.655 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.047 0.953 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -19.986 5.408 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.018 3.982 10 H 0.016 0.984 11 C -0.132 4.132 12 C -0.179 4.179 13 C -0.012 4.012 14 H 0.095 0.905 15 N -0.298 5.298 16 C -0.046 4.046 17 C -0.195 4.195 18 C -0.148 4.148 19 C 0.022 3.978 20 F -0.210 7.210 21 C 0.017 3.983 22 F -0.212 7.212 23 C -0.132 4.132 24 C -0.132 4.132 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.165 0.835 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.386 -20.045 4.927 21.333 hybrid contribution -0.972 1.484 0.659 1.893 sum 4.413 -18.561 5.586 19.880 Atomic orbital electron populations 1.70087 1.07300 1.27131 1.51667 1.25776 0.95626 1.02444 0.94960 0.85711 0.78429 0.79216 0.78912 1.19580 1.21202 1.19556 1.21516 0.92971 0.92121 1.50195 0.92885 1.19587 0.93167 0.92621 0.92870 0.98375 1.22066 0.98848 0.93610 0.98686 1.22855 0.99139 0.96344 0.99512 1.22129 0.91070 0.93402 0.94622 0.90549 1.60567 1.49038 1.02036 1.18109 1.23177 0.96049 0.89067 0.96341 1.23845 1.00364 0.95798 0.99519 1.22974 0.99321 0.95373 0.97151 1.21974 0.89464 0.96466 0.89866 1.92773 1.68958 1.88163 1.71085 1.22146 0.87338 0.99427 0.89394 1.92767 1.62981 1.87160 1.78338 1.22960 0.96099 0.95593 0.98520 1.22285 0.98008 0.93956 0.98910 0.93237 0.94940 0.95204 0.92860 0.91713 0.83537 0.88396 0.89287 0.92347 0.89510 0.88028 0.88485 0.89302 0.89018 0.88128 0.93383 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.47 12.41 21.45 0.27 -54.20 16 2 C 0.01 0.58 5.36 84.66 0.45 1.03 16 3 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -29.43 8.49 25.60 0.22 -29.21 16 8 H 0.05 2.88 7.77 -2.91 -0.02 2.86 16 9 C 0.04 1.82 2.73 -10.24 -0.03 1.79 16 10 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 11 C -0.09 -4.34 5.75 31.67 0.18 -4.16 16 12 C -0.14 -4.86 6.43 31.32 0.20 -4.66 16 13 C 0.10 3.10 3.23 45.64 0.15 3.25 16 14 H 0.08 2.30 7.47 -2.39 -0.02 2.28 16 15 N -0.67 -16.69 6.32 -463.07 -2.93 -19.62 16 16 C 0.06 1.21 3.76 45.44 0.17 1.38 16 17 C -0.16 -2.91 6.83 31.18 0.21 -2.70 16 18 C -0.15 -2.20 1.14 -51.59 -0.06 -2.26 16 19 C 0.08 1.17 6.87 71.98 0.49 1.66 16 20 F -0.23 -5.32 15.28 44.97 0.69 -4.63 16 21 C 0.07 1.07 7.00 71.99 0.50 1.57 16 22 F -0.23 -5.34 15.28 44.97 0.69 -4.66 16 23 C -0.09 -1.26 7.03 31.12 0.22 -1.04 16 24 C -0.09 -3.72 5.95 31.68 0.19 -3.53 16 25 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 26 H 0.03 1.54 8.04 -2.39 -0.02 1.52 16 27 H 0.03 1.54 7.63 -2.39 -0.02 1.52 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 30 H 0.34 8.56 7.63 -89.69 -0.68 7.87 16 31 H 0.10 1.85 7.00 -2.38 -0.02 1.83 16 32 H 0.09 1.65 7.66 -2.39 -0.02 1.64 16 33 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 34 H 0.09 1.18 7.34 -2.39 -0.02 1.16 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.12 7.96 -2.39 -0.02 1.10 16 38 H 0.09 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.10 1.31 8.10 -2.39 -0.02 1.29 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 2.30 7.94 -2.39 -0.02 2.28 16 Total: -1.00 -64.21 328.08 3.97 -60.24 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.32 Total: 13.73 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 2.91 Total: -36.87 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -2.66 Total: -73.82 kcal Atomic # 9 Polarization: -10.66 SS G_CDS: 1.37 Total: -9.29 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -64.21 3.97 -60.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595039708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.537 kcal (2) G-P(sol) polarization free energy of solvation -64.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds