Wall clock time and date at job start Mon Mar 30 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46986 * 2 1 4 4 H 1.08997 * 109.47637 * 305.62813 * 3 2 1 5 5 C 1.53004 * 109.47204 * 65.62902 * 3 2 1 6 6 C 1.52998 * 109.47242 * 184.99691 * 5 3 2 7 7 C 1.52999 * 117.50129 * 243.62257 * 6 5 3 8 8 C 1.52999 * 117.49827 * 174.99503 * 6 5 3 9 9 N 1.46901 * 109.47069 * 185.62489 * 3 2 1 10 10 C 1.46897 * 110.99984 * 85.49319 * 9 3 2 11 11 H 1.09002 * 109.47303 * 327.66233 * 10 9 3 12 12 C 1.50699 * 109.47327 * 87.66144 * 10 9 3 13 13 H 1.08008 * 119.99439 * 58.48814 * 12 10 9 14 14 C 1.37874 * 120.00312 * 238.49383 * 12 10 9 15 15 N 1.31510 * 120.00094 * 174.02958 * 14 12 10 16 16 Si 1.86799 * 119.99653 * 354.03078 * 14 12 10 17 17 H 1.48500 * 109.47440 * 85.63179 * 16 14 12 18 18 H 1.48506 * 109.46770 * 205.62949 * 16 14 12 19 19 H 1.48500 * 109.47137 * 325.62748 * 16 14 12 20 20 C 1.50704 * 109.47024 * 207.66137 * 10 9 3 21 21 C 1.38226 * 120.00205 * 314.94501 * 20 10 9 22 22 C 1.38234 * 120.00219 * 179.81111 * 21 20 10 23 23 C 1.38234 * 119.99666 * 0.39444 * 22 21 20 24 24 C 1.38237 * 120.00275 * 359.85926 * 23 22 21 25 25 C 1.38230 * 119.99804 * 359.95363 * 24 23 22 26 26 H 1.08996 * 109.46864 * 297.04593 * 1 2 3 27 27 H 1.08997 * 109.46654 * 57.03958 * 1 2 3 28 28 H 1.08996 * 109.46780 * 177.04025 * 1 2 3 29 29 H 1.08998 * 109.46791 * 120.00273 * 2 1 3 30 30 H 1.09001 * 109.47092 * 239.99821 * 2 1 3 31 31 H 1.09004 * 109.46782 * 304.99471 * 5 3 2 32 32 H 1.09000 * 109.47564 * 64.99302 * 5 3 2 33 33 H 1.09005 * 115.55088 * 29.32905 * 6 5 3 34 34 H 1.08999 * 117.49430 * 359.97438 * 7 6 5 35 35 H 1.08994 * 117.50363 * 145.01986 * 7 6 5 36 36 H 1.09001 * 117.49487 * 214.97848 * 8 6 5 37 37 H 1.08991 * 117.50131 * 359.97438 * 8 6 5 38 38 H 1.00903 * 111.00359 * 209.45065 * 9 3 2 39 39 H 0.97000 * 120.00056 * 179.97438 * 15 14 12 40 40 H 1.07997 * 120.00213 * 359.97438 * 21 20 10 41 41 H 1.07999 * 120.00311 * 180.22874 * 22 21 20 42 42 H 1.08002 * 120.00278 * 179.83072 * 23 22 21 43 43 H 1.07997 * 120.00119 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.00294 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 -0.8352 5 6 1.6488 2.1217 1.3140 6 6 2.0484 3.5978 1.2638 7 6 3.1010 4.0791 2.2645 8 6 1.6356 4.4819 2.4423 9 7 3.5028 1.4447 -0.1358 10 6 3.9004 1.3825 -1.5485 11 1 3.1661 0.8024 -2.1075 12 6 3.9724 2.7782 -2.1121 13 1 4.6330 3.5072 -1.6661 14 6 3.1951 3.1247 -3.1968 15 7 3.1688 4.3711 -3.6157 16 14 2.1793 1.8237 -4.0715 17 1 0.8732 1.6692 -3.3820 18 1 1.9501 2.2383 -5.4790 19 1 2.9071 0.5295 -4.0489 20 6 5.2517 0.7248 -1.6615 21 6 6.2709 1.0873 -0.8011 22 6 7.5092 0.4813 -0.9022 23 6 7.7306 -0.4815 -1.8691 24 6 6.7128 -0.8404 -2.7329 25 6 5.4734 -0.2371 -2.6293 26 1 -0.3633 0.4673 0.9153 27 1 -0.3632 0.5591 -0.8623 28 1 -0.3633 -1.0263 -0.0531 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 0.5712 2.0417 1.4575 32 1 2.1628 1.6341 2.1423 33 1 2.0522 4.0504 0.2722 34 1 3.5084 3.3443 2.9588 35 1 3.7975 4.8484 1.9314 36 1 1.3682 5.5162 2.2260 37 1 1.0789 4.0121 3.2531 38 1 3.9069 2.2500 0.3185 39 1 2.6222 4.6147 -4.3791 40 1 6.0992 1.8422 -0.0481 41 1 8.3045 0.7619 -0.2275 42 1 8.6988 -0.9532 -1.9499 43 1 6.8859 -1.5923 -3.4886 44 1 4.6784 -0.5171 -3.3044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070106830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:30 Heat of formation + Delta-G solvation = 29.945875 kcal Electronic energy + Delta-G solvation = -21726.432773 eV Core-core repulsion = 18836.402128 eV Total energy + Delta-G solvation = -2890.030645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.73307 -37.83425 -35.77218 -33.60524 -31.88606 -30.29566 -30.03390 -28.26528 -26.19394 -23.85176 -22.67108 -22.02828 -21.75642 -20.34958 -19.75596 -19.32930 -17.19123 -16.19870 -15.34925 -14.96529 -14.78171 -14.43754 -14.30521 -13.80212 -13.56356 -13.24973 -12.87680 -12.73054 -12.67850 -12.17349 -12.05384 -11.79138 -11.36280 -11.31773 -11.20793 -11.10454 -10.97693 -10.81050 -10.60698 -10.47994 -10.36007 -9.98100 -9.84849 -9.65244 -9.40065 -9.34954 -8.71929 -8.17462 -7.87407 -7.26393 -6.24490 -4.25153 2.15779 2.22875 3.16705 3.25319 3.26530 4.17083 4.26103 4.59025 4.97500 5.07585 5.17607 5.25490 5.36002 5.46759 5.55610 5.56804 5.62126 5.73788 5.78184 5.89604 5.91019 6.00554 6.08615 6.09995 6.13576 6.23438 6.28706 6.33508 6.38188 6.41467 6.45201 6.50689 6.60376 6.71568 6.77721 6.80865 6.89623 6.93802 7.18865 7.29031 7.44873 7.58651 7.81531 8.05382 8.32024 8.59556 8.81388 9.38453 10.87895 Molecular weight = 273.18amu Principal moments of inertia in cm(-1) A = 0.012370 B = 0.007564 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.965045 B = 3700.854326 C = 4262.787946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C 0.093 3.907 4 H 0.049 0.951 5 C -0.086 4.086 6 C -0.145 4.145 7 C -0.177 4.177 8 C -0.190 4.190 9 N -0.681 5.681 10 C 0.204 3.796 11 H 0.049 0.951 12 C -0.529 4.529 13 H 0.077 0.923 14 C 0.081 3.919 15 N -0.888 5.888 16 Si 0.866 3.134 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.262 1.262 20 C -0.014 4.014 21 C -0.103 4.103 22 C -0.126 4.126 23 C -0.152 4.152 24 C -0.124 4.124 25 C -0.135 4.135 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.339 0.661 39 H 0.265 0.735 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -6.363 8.049 10.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.017 4.017 4 H 0.067 0.933 5 C -0.124 4.124 6 C -0.163 4.163 7 C -0.214 4.214 8 C -0.227 4.227 9 N -0.312 5.312 10 C 0.096 3.904 11 H 0.067 0.933 12 C -0.568 4.568 13 H 0.095 0.905 14 C -0.123 4.123 15 N -0.525 5.525 16 Si 0.694 3.306 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.187 1.187 20 C -0.015 4.015 21 C -0.121 4.121 22 C -0.144 4.144 23 C -0.170 4.170 24 C -0.142 4.142 25 C -0.153 4.153 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.158 0.842 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.003 -6.901 8.012 10.622 hybrid contribution -0.673 0.452 -1.103 1.369 sum -1.676 -6.449 6.909 9.599 Atomic orbital electron populations 1.21841 0.96811 1.00841 1.01602 1.21527 0.94143 0.97513 1.01939 1.21342 0.90143 0.94166 0.96083 0.93304 1.21371 1.00369 0.92422 0.98236 1.22435 1.02830 0.95454 0.95589 1.22960 0.91782 1.03683 1.03004 1.22905 0.98342 1.00207 1.01204 1.61018 1.06940 1.47255 1.16019 1.18659 0.89535 0.95123 0.87045 0.93290 1.21482 1.25264 0.94625 1.15435 0.90489 1.25071 0.95921 0.94943 0.96411 1.69893 1.39844 1.16800 1.25928 0.87053 0.81173 0.82906 0.79501 1.19758 1.21366 1.18722 1.20321 0.97417 0.91546 0.92226 1.20821 0.92388 0.99569 0.99338 1.21014 0.97069 0.97624 0.98725 1.20825 0.98437 1.00008 0.97733 1.20922 0.93720 1.00280 0.99253 1.21014 0.97008 0.97881 0.99437 0.92768 0.93029 0.93331 0.91989 0.92432 0.91710 0.91760 0.86841 0.89128 0.89062 0.89408 0.89513 0.84207 0.92457 0.86767 0.87351 0.87515 0.87412 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.62 37.16 0.36 -1.81 16 2 C -0.11 -1.85 5.62 -26.73 -0.15 -2.00 16 3 C 0.09 1.69 1.87 -67.71 -0.13 1.56 16 4 H 0.05 1.05 7.69 -51.93 -0.40 0.65 16 5 C -0.09 -1.33 4.96 -26.73 -0.13 -1.46 16 6 C -0.14 -2.33 4.69 -90.62 -0.43 -2.75 16 7 C -0.18 -2.55 9.95 -26.73 -0.27 -2.81 16 8 C -0.19 -2.57 10.25 -26.73 -0.27 -2.85 16 9 N -0.68 -13.39 5.60 -102.18 -0.57 -13.97 16 10 C 0.20 4.58 1.92 -70.02 -0.13 4.45 16 11 H 0.05 1.14 3.55 -51.93 -0.18 0.96 16 12 C -0.53 -13.82 8.61 -34.44 -0.30 -14.12 16 13 H 0.08 2.22 8.06 -52.48 -0.42 1.79 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 15 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 16 Si 0.87 20.72 26.95 -169.99 -4.58 16.13 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.26 -6.02 5.94 56.52 0.34 -5.69 16 20 C -0.01 -0.30 4.93 -104.62 -0.52 -0.82 16 21 C -0.10 -2.02 9.28 -39.59 -0.37 -2.39 16 22 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 23 C -0.15 -2.53 10.05 -39.58 -0.40 -2.93 16 24 C -0.12 -2.18 10.05 -39.58 -0.40 -2.58 16 25 C -0.13 -2.74 9.67 -39.58 -0.38 -3.12 16 26 H 0.05 0.69 6.62 -51.93 -0.34 0.34 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.03 7.45 -51.93 -0.39 0.64 16 31 H 0.06 0.92 6.43 -51.93 -0.33 0.58 16 32 H 0.06 0.94 7.88 -51.93 -0.41 0.54 16 33 H 0.11 2.21 8.08 -51.93 -0.42 1.79 16 34 H 0.09 1.21 8.03 -51.93 -0.42 0.79 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.34 6.71 6.43 -39.29 -0.25 6.46 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.11 2.19 7.52 -52.49 -0.39 1.79 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.11 2.22 7.20 -52.49 -0.38 1.84 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -27.56 349.89 -10.46 -38.02 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -7.35 Total: 13.73 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: -4.00 Total: -34.11 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.20 Total: -39.04 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.58 Total: 16.13 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.56 -10.46 -38.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070106830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.962 kcal (2) G-P(sol) polarization free energy of solvation -27.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds