Wall clock time and date at job start Mon Mar 30 2020 07:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38712 * 120.03747 * 90.00174 * 10 9 7 12 12 O 1.35909 * 120.03201 * 359.97308 * 11 10 9 13 13 C 1.38711 * 119.93422 * 180.02562 * 11 10 9 14 14 C 1.38184 * 120.00169 * 359.97438 * 13 11 10 15 15 C 1.38275 * 120.07138 * 0.02562 * 14 13 11 16 16 Br 1.89099 * 119.96952 * 179.97438 * 15 14 13 17 17 C 1.38328 * 120.03078 * 269.72404 * 10 9 7 18 18 F 1.35094 * 120.00614 * 359.97438 * 17 10 9 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.96705 * 113.99906 * 90.00309 * 12 11 10 23 23 H 1.07997 * 119.99889 * 180.02562 * 13 11 10 24 24 H 1.07997 * 119.96757 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6813 -4.1778 1.1881 12 8 2.2409 -3.6673 2.3682 13 6 3.5831 -5.2317 1.1810 14 6 4.0308 -5.7499 -0.0192 15 6 3.5812 -5.2186 -1.2140 16 35 4.1964 -5.9294 -2.8548 17 6 2.6758 -4.1693 -1.2102 18 9 2.2328 -3.6552 -2.3784 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 1.4417 -4.0934 2.7073 23 1 3.9346 -5.6479 2.1135 24 1 4.7326 -6.5708 -0.0241 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217434310.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:33 Heat of formation + Delta-G solvation = -68.626639 kcal Electronic energy + Delta-G solvation = -13564.020788 eV Core-core repulsion = 10824.176932 eV Total energy + Delta-G solvation = -2739.843856 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 273.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.34737 -39.36633 -36.23264 -33.59456 -31.68369 -31.02033 -28.37683 -27.10032 -23.62880 -22.10289 -20.79484 -18.24229 -16.60841 -16.48584 -15.94093 -15.32839 -15.08115 -14.47960 -14.13937 -13.36790 -12.82070 -12.39451 -12.19757 -12.12168 -11.52135 -11.19387 -10.83239 -10.59659 -10.43612 -10.35902 -10.15761 -9.67772 -9.52782 -8.44237 -8.23911 -8.10477 -6.06817 -4.09688 1.18827 1.50935 1.74511 3.31467 3.36928 3.41600 3.68931 4.33777 4.44642 4.73017 5.04184 5.25873 5.33430 5.55114 5.92726 6.09540 6.23931 6.34221 6.63893 7.01657 7.40738 7.52489 7.86974 8.02582 8.23234 8.91768 9.53364 11.03651 Molecular weight = 273.97amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.006728 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.039853 B = 4160.541866 C = 4797.719041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.093 4.093 11 C 0.145 3.855 12 O -0.478 6.478 13 C -0.156 4.156 14 C -0.076 4.076 15 C -0.141 4.141 16 Br -0.050 7.050 17 C 0.137 3.863 18 F -0.117 7.117 19 H 0.263 0.737 20 H 0.039 0.961 21 H 0.034 0.966 22 H 0.388 0.612 23 H 0.135 0.865 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.565 -14.042 -1.032 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.095 4.095 11 C 0.099 3.901 12 O -0.288 6.288 13 C -0.175 4.175 14 C -0.096 4.096 15 C -0.222 4.222 16 Br 0.035 6.965 17 C 0.116 3.884 18 F -0.095 7.095 19 H 0.072 0.928 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.244 0.756 23 H 0.153 0.847 24 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.103 -13.791 -1.744 15.610 hybrid contribution -0.129 0.899 0.209 0.932 sum 6.974 -12.892 -1.535 14.737 Atomic orbital electron populations 1.69943 1.06003 1.26918 1.50412 1.24954 0.94914 0.99229 0.94986 0.86497 0.79860 0.82946 0.78218 1.20522 1.21051 1.19755 1.20901 0.92882 0.89460 1.51200 0.92609 1.18222 0.92081 0.88638 0.99021 1.21153 0.99908 0.98466 0.90007 1.18136 0.95046 0.91602 0.85326 1.84886 1.47377 1.62114 1.34383 1.21361 1.00614 0.97337 0.98222 1.20576 0.99608 0.99753 0.89679 1.21824 1.05097 1.02207 0.93034 1.96630 1.88002 1.84528 1.27298 1.17072 0.95643 0.93335 0.82357 1.91538 1.87391 1.85635 1.44963 0.92776 0.94297 0.94768 0.75595 0.84677 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.29 55.43 0.74 -25.71 14 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 14 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 14 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 14 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 14 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 14 7 C -0.51 -14.42 9.09 -34.44 -0.31 -14.74 14 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 14 9 C 0.06 1.46 4.71 -29.03 -0.14 1.33 14 10 C -0.09 -1.99 5.09 -104.41 -0.53 -2.52 14 11 C 0.14 2.62 6.67 -39.23 -0.26 2.36 14 12 O -0.48 -8.34 12.55 -19.46 -0.24 -8.58 14 13 C -0.16 -2.29 9.98 -39.43 -0.39 -2.68 14 14 C -0.08 -1.09 9.78 -39.59 -0.39 -1.48 14 15 C -0.14 -2.39 6.23 -39.44 -0.25 -2.63 14 16 Br -0.05 -0.73 33.28 -68.01 -2.26 -2.99 14 17 C 0.14 2.79 7.21 -39.42 -0.28 2.50 14 18 F -0.12 -2.56 15.93 2.25 0.04 -2.53 14 19 H 0.26 7.33 8.31 -40.82 -0.34 6.99 14 20 H 0.04 1.01 7.53 -51.93 -0.39 0.62 14 21 H 0.03 0.94 7.63 -51.93 -0.40 0.54 14 22 H 0.39 4.70 9.06 45.56 0.41 5.11 14 23 H 0.14 1.56 8.06 -52.49 -0.42 1.14 14 24 H 0.14 1.52 8.06 -52.49 -0.42 1.10 14 LS Contribution 246.51 15.07 3.71 3.71 Total: -1.00 -31.19 246.51 -6.45 -37.65 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: -0.76 Total: -2.29 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.65 Total: -16.22 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.71 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.24 Total: -8.58 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.26 Total: -2.99 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.19 -6.45 -37.65 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217434310.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.979 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds