Wall clock time and date at job start Mon Mar 30 2020 07:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42096 * 110.54139 * 2 1 4 4 O 1.42101 * 110.54227 * 223.24789 * 2 1 3 5 5 C 1.76202 * 104.44977 * 111.62705 * 2 1 3 6 6 C 1.38261 * 119.98681 * 89.99761 * 5 2 1 7 7 C 1.38193 * 120.00970 * 180.02562 * 6 5 2 8 8 C 1.38368 * 119.98795 * 359.97438 * 7 6 5 9 9 Cl 1.73604 * 120.01313 * 179.97438 * 8 7 6 10 10 C 1.38332 * 119.97514 * 0.02562 * 8 7 6 11 11 C 1.50703 * 120.00693 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47064 * 279.99813 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 90.00289 * 16 14 12 18 18 H 1.48505 * 109.47195 * 210.00171 * 16 14 12 19 19 H 1.48493 * 109.47449 * 330.00136 * 16 14 12 20 20 C 1.38227 * 119.98280 * 270.25316 * 5 2 1 21 21 H 1.09003 * 109.47356 * 308.37556 * 1 2 3 22 22 H 1.08999 * 109.47145 * 68.37687 * 1 2 3 23 23 H 1.09008 * 109.47332 * 188.37337 * 1 2 3 24 24 H 1.07995 * 119.99361 * 0.02562 * 6 5 2 25 25 H 1.08008 * 120.00469 * 179.97438 * 7 6 5 26 26 H 1.09002 * 109.47152 * 159.99906 * 11 10 8 27 27 H 1.09001 * 109.46980 * 40.00006 * 11 10 8 28 28 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 29 29 H 1.07994 * 119.99359 * 359.97438 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6289 1.5862 6 6 2.4260 -1.9887 1.7669 7 6 2.7704 -2.4825 3.0108 8 6 2.9431 -1.6157 4.0754 9 17 3.3750 -2.2354 5.6385 10 6 2.7705 -0.2552 3.8940 11 6 2.9579 0.6895 5.0531 12 6 1.7185 0.6848 5.9104 13 1 0.8792 0.0599 5.6429 14 6 1.6564 1.4775 7.0368 15 7 2.6786 2.2380 7.3628 16 14 0.1204 1.4711 8.0998 17 1 0.2468 0.4248 9.1460 18 1 -0.0408 2.7990 8.7447 19 1 -1.0659 1.1844 7.2539 20 6 2.4209 0.2371 2.6505 21 1 -0.3634 0.6380 0.8057 22 1 -0.3633 0.3787 -0.9553 23 1 -0.3634 -1.0168 0.1497 24 1 2.2916 -2.6651 0.9358 25 1 2.9046 -3.5449 3.1520 26 1 3.1350 1.6967 4.6759 27 1 3.8128 0.3689 5.6485 28 1 2.6347 2.7959 8.1551 29 1 2.2825 1.2988 2.5096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260400598.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:34 Heat of formation + Delta-G solvation = -59.456842 kcal Electronic energy + Delta-G solvation = -16593.374536 eV Core-core repulsion = 13634.569174 eV Total energy + Delta-G solvation = -2958.805362 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 274.022 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -39.06532 -37.03712 -35.97148 -35.84222 -33.65504 -31.52531 -30.78207 -29.52309 -27.29448 -23.60157 -22.89040 -21.18361 -18.70934 -17.32343 -16.39586 -16.22650 -16.03634 -16.01668 -14.95821 -14.65621 -13.97211 -13.47992 -13.25991 -13.25223 -12.84861 -12.45043 -12.14922 -12.03764 -11.89550 -11.61744 -11.36333 -11.25106 -11.04515 -10.88711 -10.67880 -10.42394 -10.31728 -9.71186 -9.57867 -8.75828 -8.48845 -8.20586 -6.10843 -4.14698 0.10350 1.02076 1.62046 2.60968 2.93847 3.25723 3.32458 3.34475 3.62435 4.04112 4.16168 4.38821 4.69391 4.84126 5.07374 5.10898 5.25554 5.53808 5.56255 5.67294 5.89724 6.18109 6.22188 6.42805 6.59430 7.07837 7.42619 7.54605 7.82660 8.18137 8.87588 9.48865 10.99495 Molecular weight = 274.02amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.006151 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.947575 B = 4551.158554 C = 5338.575176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.504 3.496 3 O -0.938 6.938 4 O -0.945 6.945 5 C -0.660 4.660 6 C -0.043 4.043 7 C -0.137 4.137 8 C 0.015 3.985 9 Cl -0.051 7.051 10 C -0.048 4.048 11 C 0.044 3.956 12 C -0.509 4.509 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.019 4.019 21 H 0.135 0.865 22 H 0.128 0.872 23 H 0.130 0.870 24 H 0.140 0.860 25 H 0.133 0.867 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 -7.355 -11.675 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.685 3.315 3 O -0.935 6.935 4 O -0.943 6.943 5 C -0.748 4.748 6 C -0.062 4.062 7 C -0.156 4.156 8 C -0.012 4.012 9 Cl -0.021 7.021 10 C -0.049 4.049 11 C 0.008 3.992 12 C -0.547 4.547 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.038 4.038 21 H 0.153 0.847 22 H 0.146 0.854 23 H 0.149 0.851 24 H 0.158 0.842 25 H 0.151 0.849 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.070 -7.019 -12.045 14.275 hybrid contribution -1.275 -0.371 1.628 2.101 sum -4.345 -7.390 -10.417 13.491 Atomic orbital electron populations 1.30227 1.26076 1.12074 1.11679 1.04932 0.77698 0.74565 0.74342 1.93589 1.77194 1.36532 1.86172 1.93554 1.77444 1.61834 1.61440 1.30369 1.19807 1.02984 1.21636 1.20601 0.95683 0.93076 0.96867 1.21073 1.02887 0.99658 0.92022 1.21215 0.99033 0.93876 0.87124 1.98373 1.90600 1.86769 1.26371 1.20807 0.93784 0.93475 0.96879 1.18493 0.98775 0.92687 0.89285 1.20873 0.99929 1.25316 1.08562 0.92560 1.24939 0.96335 0.95244 0.97382 1.69943 1.30133 1.26662 1.26126 0.86565 0.83270 0.77403 0.80644 1.20576 1.21121 1.19845 1.20889 0.92969 0.99646 0.90316 0.84665 0.85365 0.85108 0.84230 0.84896 0.94687 0.93870 0.92731 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.07 10.80 101.05 1.09 -3.98 15 2 S 2.50 30.11 5.80 -107.50 -0.62 29.49 15 3 O -0.94 -14.56 17.13 -57.54 -0.99 -15.54 15 4 O -0.95 -13.34 17.12 -57.54 -0.99 -14.33 15 5 C -0.66 -9.78 5.66 -39.58 -0.22 -10.00 15 6 C -0.04 -0.60 9.47 -39.59 -0.37 -0.98 15 7 C -0.14 -2.09 9.83 -39.55 -0.39 -2.48 15 8 C 0.01 0.27 6.30 -39.50 -0.25 0.02 15 9 Cl -0.05 -0.95 27.33 -51.86 -1.42 -2.37 15 10 C -0.05 -0.98 5.08 -104.59 -0.53 -1.51 15 11 C 0.04 1.09 4.57 -29.03 -0.13 0.95 15 12 C -0.51 -13.43 8.87 -34.44 -0.31 -13.73 15 13 H 0.06 1.47 7.74 -52.49 -0.41 1.06 15 14 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 15 N -0.89 -25.46 13.29 55.43 0.74 -24.72 15 16 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 15 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 19 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 20 C -0.02 -0.34 9.09 -39.59 -0.36 -0.70 15 21 H 0.13 1.01 8.14 -51.92 -0.42 0.59 15 22 H 0.13 0.73 8.14 -51.92 -0.42 0.31 15 23 H 0.13 0.81 8.14 -51.92 -0.42 0.39 15 24 H 0.14 1.54 7.57 -52.49 -0.40 1.14 15 25 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 26 H 0.03 0.90 8.01 -51.93 -0.42 0.48 15 27 H 0.04 1.12 7.36 -51.93 -0.38 0.74 15 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 29 H 0.15 2.49 7.56 -52.49 -0.40 2.10 15 LS Contribution 285.67 15.07 4.30 4.30 Total: -1.00 -33.06 285.67 -8.39 -41.45 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: -2.82 Total: -3.37 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -1.57 Total: -30.79 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.74 Total: -24.72 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.97 Total: -29.87 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 30.11 SS G_CDS: -0.62 Total: 29.49 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.42 Total: -2.37 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.06 -8.39 -41.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400598.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.009 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds