Wall clock time and date at job start Mon Mar 30 2020 07:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42096 * 110.54139 * 2 1 4 4 O 1.42101 * 110.54227 * 223.24789 * 2 1 3 5 5 C 1.76202 * 104.44977 * 111.62705 * 2 1 3 6 6 C 1.38261 * 119.98681 * 89.99761 * 5 2 1 7 7 C 1.38193 * 120.00970 * 180.02562 * 6 5 2 8 8 C 1.38368 * 119.98795 * 359.97438 * 7 6 5 9 9 Cl 1.73604 * 120.01313 * 179.97438 * 8 7 6 10 10 C 1.38332 * 119.97514 * 0.02562 * 8 7 6 11 11 C 1.50703 * 120.00693 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47064 * 279.99813 * 11 10 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 90.00289 * 16 14 12 18 18 H 1.48505 * 109.47195 * 210.00171 * 16 14 12 19 19 H 1.48493 * 109.47449 * 330.00136 * 16 14 12 20 20 C 1.38227 * 119.98280 * 270.25316 * 5 2 1 21 21 H 1.09003 * 109.47356 * 308.37556 * 1 2 3 22 22 H 1.08999 * 109.47145 * 68.37687 * 1 2 3 23 23 H 1.09008 * 109.47332 * 188.37337 * 1 2 3 24 24 H 1.07995 * 119.99361 * 0.02562 * 6 5 2 25 25 H 1.08008 * 120.00469 * 179.97438 * 7 6 5 26 26 H 1.09002 * 109.47152 * 159.99906 * 11 10 8 27 27 H 1.09001 * 109.46980 * 40.00006 * 11 10 8 28 28 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 29 29 H 1.07994 * 119.99359 * 359.97438 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6289 1.5862 6 6 2.4260 -1.9887 1.7669 7 6 2.7704 -2.4825 3.0108 8 6 2.9431 -1.6157 4.0754 9 17 3.3750 -2.2354 5.6385 10 6 2.7705 -0.2552 3.8940 11 6 2.9579 0.6895 5.0531 12 6 1.7185 0.6848 5.9104 13 1 0.8792 0.0599 5.6429 14 6 1.6564 1.4775 7.0368 15 7 2.6786 2.2380 7.3628 16 14 0.1204 1.4711 8.0998 17 1 0.2468 0.4248 9.1460 18 1 -0.0408 2.7990 8.7447 19 1 -1.0659 1.1844 7.2539 20 6 2.4209 0.2371 2.6505 21 1 -0.3634 0.6380 0.8057 22 1 -0.3633 0.3787 -0.9553 23 1 -0.3634 -1.0168 0.1497 24 1 2.2916 -2.6651 0.9358 25 1 2.9046 -3.5449 3.1520 26 1 3.1350 1.6967 4.6759 27 1 3.8128 0.3689 5.6485 28 1 2.6347 2.7959 8.1551 29 1 2.2825 1.2988 2.5096 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400598.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:32 Heat of formation + Delta-G solvation = -82.178987 kcal Electronic energy + Delta-G solvation = -16594.359842 eV Core-core repulsion = 13634.569174 eV Total energy + Delta-G solvation = -2959.790668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 274.022 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41056 -38.09466 -37.36244 -36.93240 -35.53075 -33.23991 -32.04363 -30.21062 -29.07122 -25.41669 -24.17436 -22.65033 -19.75869 -18.65110 -18.34619 -17.38774 -17.21237 -17.05783 -16.53979 -16.14830 -15.28286 -14.87240 -14.38624 -14.06124 -13.92692 -13.89657 -13.68468 -13.36568 -13.11182 -13.09233 -12.91114 -12.68461 -12.63676 -12.44196 -12.06677 -11.96364 -11.65438 -11.56626 -11.31628 -10.58114 -10.04640 -9.71032 -8.18339 -6.29067 -0.81875 -0.26813 0.29708 1.20763 1.40446 1.41024 1.51293 1.93798 2.32176 2.46508 3.06941 3.14839 3.23135 3.78677 3.87453 4.16528 4.19022 4.24158 4.47492 4.56882 4.84740 4.97432 5.00394 5.01836 5.13856 5.34700 5.64703 5.74234 5.76982 6.14766 6.80510 7.38276 8.92260 Molecular weight = 274.02amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.006151 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.947575 B = 4551.158554 C = 5338.575176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.516 3.484 3 O -0.980 6.980 4 O -0.965 6.965 5 C -0.657 4.657 6 C -0.031 4.031 7 C -0.130 4.130 8 C -0.002 4.002 9 Cl -0.064 7.064 10 C -0.083 4.083 11 C 0.053 3.947 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.957 3.043 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.261 1.261 20 C -0.033 4.033 21 H 0.143 0.857 22 H 0.159 0.841 23 H 0.159 0.841 24 H 0.181 0.819 25 H 0.166 0.834 26 H 0.007 0.993 27 H 0.017 0.983 28 H 0.264 0.736 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 -9.112 -13.549 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.698 3.302 3 O -0.977 6.977 4 O -0.962 6.962 5 C -0.741 4.741 6 C -0.049 4.049 7 C -0.149 4.149 8 C -0.029 4.029 9 Cl -0.034 7.034 10 C -0.084 4.084 11 C 0.016 3.984 12 C -0.549 4.549 13 H 0.075 0.925 14 C -0.189 4.189 15 N -0.569 5.569 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.052 4.052 21 H 0.162 0.838 22 H 0.177 0.823 23 H 0.177 0.823 24 H 0.198 0.802 25 H 0.184 0.816 26 H 0.026 0.974 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.417 -8.797 -13.898 17.317 hybrid contribution -0.566 0.137 2.042 2.124 sum -5.983 -8.661 -11.855 15.854 Atomic orbital electron populations 1.30029 1.19349 1.14504 1.13923 1.04706 0.80014 0.72982 0.72515 1.93542 1.79840 1.38269 1.86092 1.93526 1.79656 1.61994 1.61008 1.30849 1.18154 1.03144 1.21966 1.21165 0.93100 0.93248 0.97407 1.21463 1.01339 1.00828 0.91264 1.21368 1.00225 0.93632 0.87675 1.98359 1.90868 1.86672 1.27547 1.20492 0.97472 0.93859 0.96626 1.18174 0.97324 0.92328 0.90525 1.21150 1.00437 1.24636 1.08696 0.92512 1.25794 0.99295 0.94971 0.98840 1.70075 1.32278 1.27757 1.26821 0.85561 0.79912 0.77399 0.78925 1.20203 1.20845 1.18539 1.20843 0.93824 1.00099 0.90441 0.83817 0.82256 0.82284 0.80200 0.81628 0.97448 0.96516 0.92736 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -6.61 10.80 113.37 1.22 -5.39 15 2 S 2.52 54.10 5.80 -56.49 -0.33 53.77 15 3 O -0.98 -29.74 17.13 -127.65 -2.19 -31.93 15 4 O -0.96 -24.25 17.12 -127.65 -2.19 -26.43 15 5 C -0.66 -18.20 5.66 22.27 0.13 -18.07 15 6 C -0.03 -0.75 9.47 22.26 0.21 -0.54 15 7 C -0.13 -3.63 9.83 22.29 0.22 -3.41 15 8 C 0.00 -0.08 6.30 22.32 0.14 0.06 15 9 Cl -0.06 -2.43 27.33 -2.72 -0.07 -2.50 15 10 C -0.08 -3.50 5.08 -19.84 -0.10 -3.60 15 11 C 0.05 2.77 4.57 29.10 0.13 2.90 15 12 C -0.51 -27.76 8.87 25.60 0.23 -27.53 15 13 H 0.06 3.00 7.74 -2.91 -0.02 2.98 15 14 C 0.01 0.51 5.46 84.66 0.46 0.98 15 15 N -0.93 -55.05 13.29 21.45 0.28 -54.77 15 16 Si 0.96 43.19 29.54 68.60 2.03 45.21 15 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 19 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15 20 C -0.03 -1.19 9.09 22.27 0.20 -0.99 15 21 H 0.14 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.16 0.89 8.14 -2.39 -0.02 0.87 15 23 H 0.16 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.18 3.01 7.57 -2.91 -0.02 2.99 15 25 H 0.17 3.50 8.06 -2.91 -0.02 3.47 15 26 H 0.01 0.40 8.01 -2.39 -0.02 0.38 15 27 H 0.02 0.93 7.36 -2.39 -0.02 0.91 15 28 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 29 H 0.14 5.03 7.56 -2.91 -0.02 5.00 15 Total: -1.00 -74.61 285.67 1.55 -73.06 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: 1.17 Total: -0.82 kcal Atomic # 6 Polarization: -58.45 SS G_CDS: 2.84 Total: -55.60 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.28 Total: -54.77 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -4.37 Total: -58.36 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 54.10 SS G_CDS: -0.33 Total: 53.77 kcal Atomic # 17 Polarization: -2.43 SS G_CDS: -0.07 Total: -2.50 kcal Total: -74.61 1.55 -73.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400598.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.118 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds