Wall clock time and date at job start Mon Mar 30 2020 07:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36012 * 117.00020 * 2 1 4 4 C 1.39164 * 120.04891 * 275.75805 * 3 2 1 5 5 O 1.36043 * 120.04405 * 359.97438 * 4 3 2 6 6 C 1.38508 * 119.91199 * 180.23326 * 4 3 2 7 7 C 1.38371 * 120.01211 * 359.76842 * 6 4 3 8 8 Cl 1.73604 * 119.95265 * 180.02562 * 7 6 4 9 9 C 1.38505 * 120.09540 * 359.97438 * 7 6 4 10 10 F 1.35100 * 119.95291 * 179.97438 * 9 7 6 11 11 C 1.38444 * 120.08698 * 359.97438 * 9 7 6 12 12 C 1.50702 * 120.00898 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46991 * 274.20654 * 12 11 9 14 14 C 1.50702 * 109.46747 * 175.28959 * 13 12 11 15 15 H 1.07995 * 120.00682 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99851 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00024 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46968 * 60.00392 * 18 16 14 20 20 H 1.48498 * 109.47053 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47414 * 299.99823 * 18 16 14 22 22 H 1.08995 * 109.46708 * 295.19422 * 1 2 3 23 23 H 1.08998 * 109.46969 * 55.19265 * 1 2 3 24 24 H 1.08999 * 109.47343 * 175.19448 * 1 2 3 25 25 H 0.96689 * 113.99961 * 270.23033 * 5 4 3 26 26 H 1.08003 * 119.99214 * 179.79338 * 6 4 3 27 27 H 1.08995 * 109.47655 * 154.19998 * 12 11 9 28 28 H 1.09004 * 109.46648 * 34.20394 * 12 11 9 29 29 H 1.09004 * 109.47034 * 55.29540 * 13 12 11 30 30 H 1.08996 * 109.47365 * 295.28751 * 13 12 11 31 31 H 0.96995 * 119.99823 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 2.2552 1.8876 -1.1985 5 8 1.8423 1.3367 -2.3719 6 6 2.8886 3.1194 -1.1957 7 6 3.3088 3.6788 -0.0020 8 17 4.1020 5.2231 -0.0002 9 6 3.0966 3.0091 1.1917 10 9 3.5085 3.5577 2.3555 11 6 2.4629 1.7782 1.1937 12 6 2.2334 1.0507 2.4933 13 6 3.4750 0.2282 2.8436 14 6 3.2913 -0.4067 4.1979 15 1 2.3803 -0.2400 4.7534 16 6 4.2863 -1.2006 4.7278 17 7 5.3960 -1.4033 4.0515 18 14 4.0584 -1.9883 6.4062 19 1 2.8679 -2.8756 6.3789 20 1 5.2630 -2.7875 6.7456 21 1 3.8627 -0.9286 7.4279 22 1 -0.3632 0.4375 0.9299 23 1 -0.3633 0.5866 -0.8438 24 1 -0.3634 -1.0240 -0.0861 25 1 2.5049 0.7760 -2.7977 26 1 3.0542 3.6434 -2.1255 27 1 1.3747 0.3871 2.3917 28 1 2.0414 1.7743 3.2857 29 1 4.3487 0.8797 2.8633 30 1 3.6188 -0.5499 2.0940 31 1 6.0958 -1.9621 4.4241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260427310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:14 Heat of formation + Delta-G solvation = -117.485718 kcal Electronic energy + Delta-G solvation = -18995.574409 eV Core-core repulsion = 15603.872645 eV Total energy + Delta-G solvation = -3391.701764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.056 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -48.66368 -40.34493 -37.54289 -37.07639 -36.11834 -33.90412 -32.00378 -29.36156 -28.86747 -26.78445 -25.23616 -22.50054 -22.43372 -20.55860 -18.21530 -18.00742 -17.51970 -16.48420 -16.09773 -15.84934 -15.27237 -14.88646 -14.54697 -14.45105 -14.11007 -13.52710 -13.05769 -12.74565 -12.64029 -12.36984 -12.15905 -11.81661 -11.36821 -11.23366 -11.02338 -10.90474 -10.69487 -10.60660 -9.95558 -9.87041 -9.63292 -9.14570 -8.46628 -8.36910 -8.33322 -5.99319 -4.02412 0.79908 1.03162 1.95203 3.08767 3.34319 3.38532 3.40925 3.74350 4.09812 4.27154 4.45944 4.74278 5.09799 5.29854 5.36417 5.39460 5.40386 5.52949 5.70272 5.75308 5.82337 6.09169 6.40672 6.49664 6.54192 6.93795 7.30571 7.64230 7.64862 7.77483 7.98621 8.38164 9.02920 9.61101 11.11947 Molecular weight = 274.06amu Principal moments of inertia in cm(-1) A = 0.018083 B = 0.005894 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.059808 B = 4749.833706 C = 5828.152334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.316 6.316 3 C 0.104 3.896 4 C 0.087 3.913 5 O -0.487 6.487 6 C -0.115 4.115 7 C -0.064 4.064 8 Cl -0.051 7.051 9 C 0.118 3.882 10 F -0.115 7.115 11 C -0.085 4.085 12 C -0.074 4.074 13 C 0.034 3.966 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.394 0.606 26 H 0.149 0.851 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.017 0.983 30 H 0.023 0.977 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 8.312 -12.306 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.059 3.941 4 C 0.041 3.959 5 O -0.297 6.297 6 C -0.135 4.135 7 C -0.092 4.092 8 Cl -0.022 7.022 9 C 0.097 3.903 10 F -0.093 7.093 11 C -0.087 4.087 12 C -0.111 4.111 13 C -0.003 4.003 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.114 0.886 25 H 0.251 0.749 26 H 0.166 0.834 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.227 8.497 -12.136 16.484 hybrid contribution 0.482 -0.317 0.919 1.085 sum -6.745 8.181 -11.216 15.434 Atomic orbital electron populations 1.23015 0.78469 1.03406 1.00717 1.86090 1.20029 1.23137 1.93971 1.18662 0.98269 0.86601 0.90583 1.18533 0.99366 0.92301 0.85690 1.84784 1.43682 1.67423 1.33832 1.20888 0.99417 0.96017 0.97152 1.20707 1.04305 0.90616 0.93571 1.98371 1.78464 1.26554 1.98855 1.17029 0.99815 0.92604 0.80841 1.91565 1.87611 1.84654 1.45458 1.20632 0.97526 0.92223 0.98323 1.20793 1.02728 0.98342 0.89268 1.19046 0.90375 0.94134 0.96716 1.21132 1.02499 1.29717 1.02597 0.92608 1.25007 0.95198 0.96474 0.97611 1.69962 1.06603 1.38671 1.38008 0.86635 0.77476 0.79393 0.84366 1.20210 1.21264 1.20201 0.93344 0.93291 0.88632 0.74936 0.83373 0.91046 0.91330 0.96453 0.95912 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.89 101.05 1.10 1.58 16 2 O -0.32 -5.27 9.25 -34.32 -0.32 -5.59 16 3 C 0.10 1.73 5.71 -39.13 -0.22 1.50 16 4 C 0.09 1.21 6.72 -39.14 -0.26 0.95 16 5 O -0.49 -5.64 13.29 -34.41 -0.46 -6.10 16 6 C -0.12 -1.50 9.76 -39.43 -0.38 -1.89 16 7 C -0.06 -0.96 6.32 -39.43 -0.25 -1.21 16 8 Cl -0.05 -0.69 28.61 -51.86 -1.48 -2.18 16 9 C 0.12 2.08 7.21 -39.41 -0.28 1.80 16 10 F -0.11 -2.20 16.11 2.25 0.04 -2.16 16 11 C -0.09 -1.58 5.15 -104.44 -0.54 -2.12 16 12 C -0.07 -1.56 4.88 -27.88 -0.14 -1.70 16 13 C 0.03 0.90 4.96 -27.88 -0.14 0.76 16 14 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.69 5.46 -17.81 -0.10 1.60 16 17 N -0.89 -27.11 13.29 55.43 0.74 -26.38 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H 0.05 0.60 7.73 -51.93 -0.40 0.20 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.39 2.96 9.06 45.56 0.41 3.37 16 26 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.07 1.44 6.79 -51.93 -0.35 1.09 16 28 H 0.07 1.43 7.76 -51.93 -0.40 1.03 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 295.59 15.07 4.45 4.45 Total: -1.00 -31.96 295.59 -5.98 -37.94 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -2.40 Total: -2.84 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.53 Total: -13.88 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.74 Total: -26.38 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.77 Total: -11.69 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.96 -5.98 -37.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260427310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.546 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds