Wall clock time and date at job start Mon Mar 30 2020 07:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 S 1.81399 * 109.47143 * 119.99997 * 2 1 3 5 5 C 1.81398 * 103.00088 * 295.00194 * 4 2 1 6 6 C 1.50705 * 109.47136 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99647 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99670 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99804 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00247 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47486 * 90.00060 * 10 8 6 12 12 H 1.48504 * 109.47001 * 209.99905 * 10 8 6 13 13 H 1.48502 * 109.47145 * 329.99462 * 10 8 6 14 14 C 1.50698 * 109.47395 * 240.00137 * 2 1 3 15 15 C 1.38236 * 120.00866 * 94.72364 * 14 2 1 16 16 C 1.38221 * 120.04979 * 179.77165 * 15 14 2 17 17 C 1.38254 * 120.06160 * 0.50460 * 16 15 14 18 18 C 1.38276 * 120.01391 * 359.74742 * 17 16 15 19 19 Cl 1.73601 * 120.02603 * 179.97438 * 18 17 16 20 20 C 1.38406 * 120.00369 * 275.00052 * 14 2 1 21 21 F 1.35095 * 120.03484 * 359.95504 * 20 14 2 22 22 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 24 24 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 25 25 H 1.09002 * 109.46881 * 299.99990 * 5 4 2 26 26 H 1.09000 * 109.46946 * 60.00038 * 5 4 2 27 27 H 0.97002 * 120.00018 * 180.02562 * 9 8 6 28 28 H 1.08000 * 119.97487 * 359.97438 * 15 14 2 29 29 H 1.08006 * 119.96667 * 180.25356 * 16 15 14 30 30 H 1.07999 * 119.99528 * 179.72807 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 1.5664 0.2152 2.8309 6 6 1.9973 -0.3697 4.1513 7 1 2.5574 -1.2927 4.1758 8 6 1.6774 0.2743 5.3277 9 7 2.0539 -0.2359 6.4800 10 14 0.7092 1.8712 5.2850 11 1 -0.7438 1.5710 5.3443 12 1 1.0889 2.7115 6.4491 13 1 1.0131 2.6008 4.0278 14 6 2.0324 -0.7104 -1.2304 15 6 2.3558 0.0134 -2.3629 16 6 2.8211 -0.6369 -3.4904 17 6 2.9540 -2.0130 -3.4910 18 6 2.6263 -2.7400 -2.3613 19 17 2.7925 -4.4680 -2.3619 20 6 2.1646 -2.0881 -1.2287 21 9 1.8443 -2.7967 -0.1240 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0001 1.2084 2.7141 26 1 0.4791 0.2880 2.8037 27 1 1.8285 0.2169 7.3077 28 1 2.2479 1.0879 -2.3657 29 1 3.0773 -0.0697 -4.3731 30 1 3.3136 -2.5203 -4.3740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413015185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:44 Heat of formation + Delta-G solvation = -30.800450 kcal Electronic energy + Delta-G solvation = -16290.788781 eV Core-core repulsion = 13345.598843 eV Total energy + Delta-G solvation = -2945.189938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 274.029 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.72216 -39.35618 -36.70752 -34.18729 -33.02461 -30.54885 -29.83020 -29.03399 -24.26744 -22.93550 -22.63448 -21.26466 -17.69279 -17.10260 -16.85759 -16.33299 -15.64222 -15.19250 -14.61554 -14.25650 -14.03936 -13.62421 -13.36905 -13.22837 -12.94233 -12.76930 -12.51873 -12.26383 -11.80847 -11.70848 -11.41288 -11.34941 -10.96602 -10.77706 -10.35740 -9.99536 -9.60756 -8.99499 -8.84853 -8.70338 -8.64550 -6.74475 -6.16415 -4.18106 0.82863 0.92527 1.91027 2.39677 3.20860 3.28157 3.28628 3.31559 3.62916 4.10386 4.31546 4.38975 4.63383 4.88118 4.95038 5.14330 5.16457 5.32697 5.39302 5.67942 5.71811 5.84568 5.93973 6.01466 6.11772 6.28056 6.56246 6.60563 6.71871 7.45510 8.32380 8.87128 9.39454 10.95836 Molecular weight = 274.03amu Principal moments of inertia in cm(-1) A = 0.031090 B = 0.004872 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.400338 B = 5746.236811 C = 6361.744417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 H 0.095 0.905 4 S -0.229 6.229 5 C 0.034 3.966 6 C -0.511 4.511 7 H 0.083 0.917 8 C 0.079 3.921 9 N -0.892 5.892 10 Si 0.878 3.122 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.267 1.267 14 C -0.081 4.081 15 C -0.080 4.080 16 C -0.122 4.122 17 C -0.089 4.089 18 C -0.077 4.077 19 Cl -0.053 7.053 20 C 0.129 3.871 21 F -0.095 7.095 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.267 0.733 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -0.002 -22.012 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 H 0.113 0.887 4 S 0.000 6.000 5 C -0.114 4.114 6 C -0.550 4.550 7 H 0.101 0.899 8 C -0.125 4.125 9 N -0.530 5.530 10 Si 0.704 3.296 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.191 1.191 14 C -0.083 4.083 15 C -0.100 4.100 16 C -0.140 4.140 17 C -0.108 4.108 18 C -0.105 4.105 19 Cl -0.024 7.024 20 C 0.107 3.893 21 F -0.073 7.073 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.223 -1.108 -21.667 21.696 hybrid contribution -1.160 1.721 0.320 2.100 sum -1.383 0.614 -21.347 21.400 Atomic orbital electron populations 1.22041 0.92408 1.03316 1.02130 1.22023 0.99003 1.01711 0.94278 0.88651 1.87308 1.75895 1.38125 0.98673 1.21536 0.98256 0.96114 0.95510 1.20463 1.36935 1.10706 0.86896 0.89891 1.24863 0.95318 0.97331 0.94982 1.69873 1.45941 1.39617 0.97543 0.86812 0.80780 0.83893 0.78073 1.19900 1.20840 1.19143 1.19518 1.01467 0.91170 0.96127 1.20995 0.97057 1.00499 0.91399 1.21073 1.00575 0.93553 0.98820 1.20930 0.99299 0.94038 0.96555 1.21024 1.07576 0.86161 0.95728 1.98383 1.96341 1.09000 1.98670 1.17353 0.99429 0.89241 0.83231 1.91664 1.89332 1.77332 1.48946 0.91367 0.91387 0.92419 0.95054 0.95076 0.92269 0.84477 0.84453 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.08 37.16 0.34 -1.68 16 2 C -0.04 -0.66 2.97 -27.89 -0.08 -0.74 16 3 H 0.10 1.40 8.05 -51.92 -0.42 0.98 16 4 S -0.23 -4.91 18.03 -107.50 -1.94 -6.85 16 5 C 0.03 0.81 4.46 36.01 0.16 0.97 16 6 C -0.51 -14.79 9.68 -34.44 -0.33 -15.12 16 7 H 0.08 2.65 7.96 -52.49 -0.42 2.24 16 8 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 9 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 10 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 14 C -0.08 -1.13 4.90 -104.56 -0.51 -1.64 16 15 C -0.08 -0.84 9.68 -39.59 -0.38 -1.22 16 16 C -0.12 -1.07 10.04 -39.58 -0.40 -1.46 16 17 C -0.09 -0.88 9.83 -39.56 -0.39 -1.27 16 18 C -0.08 -0.99 6.33 -39.43 -0.25 -1.24 16 19 Cl -0.05 -0.67 28.62 -51.86 -1.48 -2.15 16 20 C 0.13 1.96 6.93 -39.39 -0.27 1.69 16 21 F -0.09 -1.73 13.76 2.25 0.03 -1.70 16 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.07 1.04 6.92 -51.93 -0.36 0.68 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.03 0.75 7.20 -51.92 -0.37 0.37 16 26 H 0.03 0.73 6.57 -51.92 -0.34 0.39 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 287.43 15.07 4.33 4.33 Total: -1.00 -31.30 287.43 -8.37 -39.67 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -3.19 Total: -3.69 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.22 Total: -19.53 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.77 Total: -26.48 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.03 Total: -1.70 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 16 Polarization: -4.91 SS G_CDS: -1.94 Total: -6.85 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.48 Total: -2.15 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.30 -8.37 -39.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.865 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds