Wall clock time and date at job start Mon Mar 30 2020 07:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 S 1.81399 * 109.47143 * 119.99997 * 2 1 3 5 5 C 1.81398 * 103.00088 * 295.00194 * 4 2 1 6 6 C 1.50705 * 109.47136 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99647 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99670 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99804 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00247 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47486 * 90.00060 * 10 8 6 12 12 H 1.48504 * 109.47001 * 209.99905 * 10 8 6 13 13 H 1.48502 * 109.47145 * 329.99462 * 10 8 6 14 14 C 1.50698 * 109.47395 * 240.00137 * 2 1 3 15 15 C 1.38236 * 120.00866 * 94.72364 * 14 2 1 16 16 C 1.38221 * 120.04979 * 179.77165 * 15 14 2 17 17 C 1.38254 * 120.06160 * 0.50460 * 16 15 14 18 18 C 1.38276 * 120.01391 * 359.74742 * 17 16 15 19 19 Cl 1.73601 * 120.02603 * 179.97438 * 18 17 16 20 20 C 1.38406 * 120.00369 * 275.00052 * 14 2 1 21 21 F 1.35095 * 120.03484 * 359.95504 * 20 14 2 22 22 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 24 24 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 25 25 H 1.09002 * 109.46881 * 299.99990 * 5 4 2 26 26 H 1.09000 * 109.46946 * 60.00038 * 5 4 2 27 27 H 0.97002 * 120.00018 * 180.02562 * 9 8 6 28 28 H 1.08000 * 119.97487 * 359.97438 * 15 14 2 29 29 H 1.08006 * 119.96667 * 180.25356 * 16 15 14 30 30 H 1.07999 * 119.99528 * 179.72807 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 1.5664 0.2152 2.8309 6 6 1.9973 -0.3697 4.1513 7 1 2.5574 -1.2927 4.1758 8 6 1.6774 0.2743 5.3277 9 7 2.0539 -0.2359 6.4800 10 14 0.7092 1.8712 5.2850 11 1 -0.7438 1.5710 5.3443 12 1 1.0889 2.7115 6.4491 13 1 1.0131 2.6008 4.0278 14 6 2.0324 -0.7104 -1.2304 15 6 2.3558 0.0134 -2.3629 16 6 2.8211 -0.6369 -3.4904 17 6 2.9540 -2.0130 -3.4910 18 6 2.6263 -2.7400 -2.3613 19 17 2.7925 -4.4680 -2.3619 20 6 2.1646 -2.0881 -1.2287 21 9 1.8443 -2.7967 -0.1240 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0001 1.2084 2.7141 26 1 0.4791 0.2880 2.8037 27 1 1.8285 0.2169 7.3077 28 1 2.2479 1.0879 -2.3657 29 1 3.0773 -0.0697 -4.3731 30 1 3.3136 -2.5203 -4.3740 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413015185.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:43 Heat of formation + Delta-G solvation = -48.626169 kcal Electronic energy + Delta-G solvation = -16291.561762 eV Core-core repulsion = 13345.598843 eV Total energy + Delta-G solvation = -2945.962919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 274.029 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.91234 -40.24851 -37.66165 -35.28957 -35.16114 -31.56152 -31.40613 -30.40077 -25.30170 -24.72690 -23.81051 -22.36105 -19.16769 -18.63538 -18.09468 -17.47550 -16.82782 -16.65018 -16.02457 -15.43895 -15.27592 -15.16586 -14.79518 -14.43350 -14.38977 -14.21584 -13.88430 -13.35876 -13.18003 -12.81035 -12.64377 -12.37011 -12.35397 -12.12903 -12.04385 -11.79221 -11.57895 -10.89544 -10.48492 -9.84538 -9.66424 -8.44417 -8.37663 -6.47591 -0.04775 0.00283 0.92896 1.00698 1.32131 1.34998 1.45635 1.96455 2.28813 2.46039 2.94933 3.15281 3.33258 3.84292 3.97358 4.06495 4.19771 4.26591 4.49008 4.60816 4.70379 4.74120 4.81996 4.94717 4.97105 5.14933 5.19640 5.29403 5.36077 5.72285 6.06949 6.56339 7.14687 8.78579 Molecular weight = 274.03amu Principal moments of inertia in cm(-1) A = 0.031090 B = 0.004872 C = 0.004400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.400338 B = 5746.236811 C = 6361.744417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.021 4.021 3 H 0.115 0.885 4 S -0.284 6.284 5 C 0.041 3.959 6 C -0.529 4.529 7 H 0.029 0.971 8 C 0.017 3.983 9 N -0.943 5.943 10 Si 0.957 3.043 11 H -0.261 1.261 12 H -0.276 1.276 13 H -0.242 1.242 14 C -0.101 4.101 15 C -0.070 4.070 16 C -0.102 4.102 17 C -0.081 4.081 18 C -0.090 4.090 19 Cl -0.062 7.062 20 C 0.088 3.912 21 F -0.126 7.126 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.096 0.904 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.272 0.728 28 H 0.170 0.830 29 H 0.184 0.816 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 3.003 -25.673 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 H 0.133 0.867 4 S -0.056 6.056 5 C -0.106 4.106 6 C -0.568 4.568 7 H 0.047 0.953 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.778 3.222 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.166 1.166 14 C -0.103 4.103 15 C -0.090 4.090 16 C -0.120 4.120 17 C -0.099 4.099 18 C -0.118 4.118 19 Cl -0.033 7.033 20 C 0.067 3.933 21 F -0.105 7.105 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.188 0.812 29 H 0.201 0.799 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.918 1.884 -25.339 25.425 hybrid contribution -0.854 0.696 1.278 1.688 sum -1.772 2.580 -24.060 24.263 Atomic orbital electron populations 1.22014 0.91371 1.02768 1.03445 1.22077 0.99792 1.01742 0.91298 0.86717 1.87516 1.76878 1.39483 1.01705 1.21269 0.98586 0.96414 0.94363 1.20682 1.36757 1.09337 0.90002 0.95265 1.25963 0.96339 1.01859 0.94102 1.70041 1.47642 1.41909 0.98609 0.85574 0.79120 0.78274 0.79219 1.18606 1.20173 1.16566 1.19543 1.03442 0.90715 0.96610 1.21399 0.95331 1.01944 0.90287 1.21609 0.97783 0.93050 0.99512 1.21402 0.97584 0.94798 0.96148 1.21247 1.08317 0.86012 0.96201 1.98375 1.96409 1.09848 1.98697 1.17811 1.02007 0.90140 0.83350 1.91569 1.90092 1.78075 1.50724 0.92949 0.92389 0.88506 0.94214 0.94132 0.91870 0.81247 0.79869 0.81315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.08 71.98 0.65 -3.03 16 2 C -0.02 -0.62 2.97 29.85 0.09 -0.53 16 3 H 0.11 2.98 8.05 -2.39 -0.02 2.96 16 4 S -0.28 -12.57 18.03 -56.49 -1.02 -13.58 16 5 C 0.04 2.03 4.46 71.24 0.32 2.35 16 6 C -0.53 -32.05 9.68 25.60 0.25 -31.80 16 7 H 0.03 2.02 7.96 -2.91 -0.02 1.99 16 8 C 0.02 0.99 5.47 84.65 0.46 1.46 16 9 N -0.94 -59.84 13.96 21.45 0.30 -59.54 16 10 Si 0.96 43.31 27.47 68.60 1.88 45.19 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 14 C -0.10 -2.61 4.90 -19.83 -0.10 -2.71 16 15 C -0.07 -1.14 9.68 22.27 0.22 -0.92 16 16 C -0.10 -1.21 10.04 22.27 0.22 -0.99 16 17 C -0.08 -1.28 9.83 22.28 0.22 -1.06 16 18 C -0.09 -2.21 6.33 22.37 0.14 -2.07 16 19 Cl -0.06 -1.56 28.62 -2.72 -0.08 -1.64 16 20 C 0.09 2.66 6.93 22.40 0.16 2.82 16 21 F -0.13 -4.87 13.76 44.97 0.62 -4.25 16 22 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 23 H 0.06 1.66 6.92 -2.39 -0.02 1.64 16 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.04 1.85 7.20 -2.39 -0.02 1.83 16 26 H 0.04 1.89 6.57 -2.39 -0.02 1.87 16 27 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 28 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 29 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 30 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -74.41 287.43 5.43 -68.99 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 1.09 Total: 1.33 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 2.63 Total: -36.49 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.30 Total: -59.54 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.62 Total: -4.25 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: -12.57 SS G_CDS: -1.02 Total: -13.58 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -74.41 5.43 -68.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413015185.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.360 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds