Wall clock time and date at job start Mon Mar 30 2020 07:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48509 * 109.46755 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47481 * 299.99827 * 3 2 1 6 6 H 1.48497 * 109.47048 * 60.00383 * 3 2 1 7 7 C 1.37872 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00440 * 359.97438 * 7 2 1 10 10 O 1.45205 * 109.47548 * 180.02562 * 9 7 2 11 11 C 1.34707 * 116.99953 * 180.02562 * 10 9 7 12 12 O 1.21467 * 120.00059 * 359.97438 * 11 10 9 13 13 C 1.47731 * 120.00039 * 180.02562 * 11 10 9 14 14 C 1.39655 * 120.14610 * 0.19854 * 13 11 10 15 15 C 1.37916 * 119.84597 * 180.25977 * 14 13 11 16 16 C 1.38391 * 120.15142 * 359.51461 * 15 14 13 17 17 C 1.38345 * 120.30260 * 0.27963 * 16 15 14 18 18 C 1.50699 * 119.93023 * 179.97438 * 17 16 15 19 19 F 1.39911 * 109.46670 * 0.02562 * 18 17 16 20 20 F 1.39895 * 109.47227 * 119.99939 * 18 17 16 21 21 F 1.39897 * 109.47602 * 240.00627 * 18 17 16 22 22 C 1.37971 * 120.14907 * 359.95556 * 17 16 15 23 23 H 0.97003 * 119.99307 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47204 * 59.99932 * 9 7 2 25 25 H 1.09007 * 109.47462 * 300.00114 * 9 7 2 26 26 H 1.07998 * 120.07576 * 0.03338 * 14 13 11 27 27 H 1.08002 * 119.92771 * 179.79894 * 15 14 13 28 28 H 1.07997 * 119.85156 * 180.25884 * 16 15 14 29 29 H 1.08003 * 120.07511 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1946 -3.6028 -0.0005 11 6 1.6796 -4.8476 -0.0011 12 8 0.4754 -5.0067 -0.0011 13 6 2.5794 -6.0192 -0.0005 14 6 3.9644 -5.8399 0.0047 15 6 4.7988 -6.9380 -0.0002 16 6 4.2664 -8.2155 -0.0002 17 6 2.8954 -8.4004 -0.0011 18 6 2.3248 -9.7951 -0.0017 19 9 3.3691 -10.7262 -0.0006 20 9 1.5371 -9.9772 1.1400 21 9 1.5386 -9.9770 -1.1445 22 6 2.0492 -7.3106 -0.0011 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8897 26 1 4.3811 -4.8435 0.0089 27 1 5.8700 -6.8008 0.0005 28 1 4.9243 -9.0720 0.0001 29 1 0.9790 -7.4563 -0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526918607.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:32 Heat of formation + Delta-G solvation = -218.992567 kcal Electronic energy + Delta-G solvation = -20085.993416 eV Core-core repulsion = 16138.093304 eV Total energy + Delta-G solvation = -3947.900112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.060 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.34530 -47.87930 -47.78033 -40.15468 -38.69434 -35.68283 -32.99767 -32.38427 -31.50091 -27.95937 -26.22374 -24.64684 -22.62341 -22.36264 -20.50333 -18.68844 -18.65521 -18.52017 -16.85120 -16.63078 -16.41559 -15.64784 -15.50722 -15.09844 -14.70145 -14.58700 -14.40095 -14.24201 -14.21416 -13.95521 -13.91508 -13.18831 -12.99416 -12.72534 -12.21470 -12.07352 -11.71089 -11.40660 -11.11649 -11.04337 -10.37171 -9.93919 -9.79413 -9.50866 -9.40086 -9.32535 -8.58137 -6.27783 -4.33705 0.48777 0.81597 2.42607 2.69230 3.20122 3.22606 3.28648 3.36483 3.53989 3.58808 3.86929 4.23488 4.26850 4.57291 4.64517 4.95676 4.96769 5.08712 5.14426 5.50433 5.57381 5.85661 6.02623 6.11063 6.41533 6.75599 7.14293 7.34684 7.72250 7.92599 8.43732 8.76997 9.31155 10.82908 Molecular weight = 274.06amu Principal moments of inertia in cm(-1) A = 0.041456 B = 0.003575 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.246635 B = 7829.560288 C = 8325.014034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.530 4.530 8 H 0.073 0.927 9 C 0.205 3.795 10 O -0.351 6.351 11 C 0.494 3.506 12 O -0.511 6.511 13 C -0.111 4.111 14 C -0.030 4.030 15 C -0.133 4.133 16 C -0.050 4.050 17 C -0.200 4.200 18 C 0.513 3.487 19 F -0.178 7.178 20 F -0.175 7.175 21 F -0.175 7.175 22 C -0.012 4.012 23 H 0.268 0.732 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.153 0.847 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -17.835 0.004 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.091 0.909 9 C 0.134 3.866 10 O -0.266 6.266 11 C 0.338 3.662 12 O -0.402 6.402 13 C -0.112 4.112 14 C -0.048 4.048 15 C -0.151 4.151 16 C -0.068 4.068 17 C -0.201 4.201 18 C 0.458 3.542 19 F -0.159 7.159 20 F -0.156 7.156 21 F -0.156 7.156 22 C -0.031 4.031 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.171 0.829 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.960 -17.730 0.004 19.866 hybrid contribution -0.008 0.666 0.001 0.666 sum 8.953 -17.065 0.005 19.271 Atomic orbital electron populations 1.69991 1.06162 1.27625 1.48966 1.24972 0.95070 0.99598 0.94664 0.86165 0.79832 0.81977 0.77831 1.19337 1.20627 1.20634 1.21008 0.94284 0.88552 1.52920 0.90918 1.21029 0.87511 0.79752 0.98291 1.86483 1.44065 1.14428 1.81672 1.20859 0.86729 0.84639 0.74014 1.90804 1.16145 1.87309 1.45990 1.19350 0.93680 0.91588 1.06594 1.21898 0.92002 1.00897 0.90028 1.21196 1.00850 0.91295 1.01732 1.21224 0.93051 0.98873 0.93645 1.19817 0.95597 0.91419 1.13308 1.18181 0.75810 0.86202 0.73968 1.93158 1.57927 1.68592 1.96271 1.93234 1.75341 1.96042 1.50999 1.93234 1.75413 1.96046 1.50915 1.20977 1.00932 0.90018 0.91146 0.92247 0.95047 0.95062 0.82910 0.83921 0.84050 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 13.29 55.43 0.74 -25.25 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.92 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.53 -14.77 9.44 -34.44 -0.33 -15.10 15 8 H 0.07 1.95 7.81 -52.48 -0.41 1.54 15 9 C 0.21 5.54 5.23 36.00 0.19 5.73 15 10 O -0.35 -8.04 9.46 -40.51 -0.38 -8.42 15 11 C 0.49 10.12 7.90 34.61 0.27 10.39 15 12 O -0.51 -11.87 16.14 -19.24 -0.31 -12.18 15 13 C -0.11 -1.71 5.87 -104.98 -0.62 -2.33 15 14 C -0.03 -0.37 9.62 -39.17 -0.38 -0.75 15 15 C -0.13 -1.23 10.03 -39.64 -0.40 -1.63 15 16 C -0.05 -0.47 9.43 -39.49 -0.37 -0.84 15 17 C -0.20 -2.29 5.37 -104.68 -0.56 -2.85 15 18 C 0.51 5.67 3.31 36.00 0.12 5.79 15 19 F -0.18 -1.79 15.96 2.25 0.04 -1.76 15 20 F -0.17 -2.07 17.23 2.25 0.04 -2.04 15 21 F -0.17 -2.07 17.23 2.25 0.04 -2.03 15 22 C -0.01 -0.17 9.14 -39.17 -0.36 -0.53 15 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 24 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 25 H 0.03 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.15 1.84 7.61 -52.49 -0.40 1.44 15 27 H 0.14 0.87 8.06 -52.49 -0.42 0.45 15 28 H 0.14 0.97 7.14 -52.49 -0.37 0.59 15 29 H 0.15 2.06 7.65 -52.48 -0.40 1.66 15 LS Contribution 283.82 15.07 4.28 4.28 Total: -1.00 -30.79 283.82 -5.10 -35.89 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -1.99 Total: -3.74 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -2.52 Total: -0.55 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.74 Total: -25.25 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.69 Total: -20.61 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.11 Total: -5.83 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.79 -5.10 -35.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526918607.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.106 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds