Wall clock time and date at job start Mon Mar 30 2020 07:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47529 * 2 1 4 4 C 1.38418 * 120.11209 * 89.99738 * 3 2 1 5 5 S 1.76197 * 119.92918 * 0.02562 * 4 3 2 6 6 C 1.39260 * 120.14171 * 180.30172 * 4 3 2 7 7 C 1.38994 * 120.36330 * 359.44313 * 6 4 3 8 8 O 1.35906 * 119.89467 * 180.27998 * 7 6 4 9 9 C 1.42896 * 116.99565 * 0.27484 * 8 7 6 10 10 F 1.39894 * 109.47358 * 300.00073 * 9 8 7 11 11 F 1.39904 * 109.47172 * 60.00054 * 9 8 7 12 12 C 1.38176 * 120.21954 * 0.55940 * 7 6 4 13 13 C 1.40583 * 120.10634 * 270.02169 * 3 2 1 14 14 C 1.41415 * 120.17946 * 359.95506 * 13 3 2 15 15 H 1.07995 * 120.00077 * 25.46552 * 14 13 3 16 16 C 1.39911 * 119.99725 * 205.45753 * 14 13 3 17 17 N 1.30833 * 120.00352 * 15.39910 * 16 14 13 18 18 Si 1.86804 * 119.99809 * 195.39021 * 16 14 13 19 19 H 1.48501 * 109.46815 * 90.00646 * 18 16 14 20 20 H 1.48504 * 109.47398 * 210.00219 * 18 16 14 21 21 H 1.48493 * 109.47534 * 330.00720 * 18 16 14 22 22 H 1.08996 * 109.47391 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46853 * 300.00457 * 1 2 3 24 24 H 1.08994 * 109.46994 * 60.00018 * 1 2 3 25 25 H 1.08996 * 109.47211 * 239.99732 * 2 1 3 26 26 H 1.09011 * 109.47151 * 119.99689 * 2 1 3 27 27 H 1.34505 * 102.99767 * 90.00269 * 5 4 3 28 28 H 1.07996 * 119.82144 * 179.70686 * 6 4 3 29 29 H 1.08998 * 109.46905 * 179.97438 * 9 8 7 30 30 H 1.07993 * 120.07633 * 179.74375 * 12 7 6 31 31 H 0.97003 * 120.00423 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2639 2.0755 1.1974 5 16 1.9711 1.2457 2.7239 6 6 2.7222 3.3905 1.1981 7 6 2.9617 4.0517 -0.0008 8 8 3.4143 5.3332 0.0111 9 6 3.6268 5.9342 1.2899 10 9 2.4226 5.9542 2.0017 11 9 4.5767 5.1934 2.0014 12 6 2.7356 3.4125 -1.2048 13 6 2.2671 2.0857 -1.2162 14 6 2.0338 1.4247 -2.4444 15 1 1.3215 0.6146 -2.4948 16 6 2.7258 1.8205 -3.5942 17 7 3.7881 2.5772 -3.4905 18 14 2.1331 1.2682 -5.2774 19 1 1.1714 2.2640 -5.8147 20 1 3.2930 1.1538 -6.1977 21 1 1.4638 -0.0519 -5.1581 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.1566 0.6669 2.9858 28 1 2.8965 3.8980 2.1353 29 1 3.9875 6.9541 1.1566 30 1 2.9186 3.9299 -2.1349 31 1 4.2681 2.8512 -4.2877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575659180.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:22 Heat of formation + Delta-G solvation = -138.833263 kcal Electronic energy + Delta-G solvation = -19308.323122 eV Core-core repulsion = 15930.112154 eV Total energy + Delta-G solvation = -3378.210968 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.058 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.83702 -46.84151 -38.81736 -36.94089 -33.78529 -32.56642 -29.85322 -28.26623 -25.68247 -25.27738 -22.62161 -21.66252 -19.89062 -18.72343 -17.75785 -17.39441 -16.79978 -16.32932 -15.56401 -14.67010 -14.53537 -14.24472 -13.90556 -13.42842 -13.26938 -13.09759 -12.93882 -12.85243 -12.59856 -12.00440 -11.85844 -11.59126 -11.54258 -11.29337 -10.91714 -10.85475 -10.50708 -10.25896 -9.93094 -9.61357 -9.54446 -9.24083 -7.65537 -7.38758 -7.20567 -6.86759 -4.55538 2.08266 2.58174 2.71114 3.00582 3.03907 3.05584 3.31042 3.57984 3.82618 3.98205 4.40200 4.77799 5.09090 5.38886 5.94176 6.00614 6.20664 6.25840 6.35551 6.60422 6.65668 6.73803 6.92583 7.00753 7.09172 7.14294 7.30527 7.56179 7.61604 7.83211 8.09024 8.43096 8.66259 8.69416 10.03097 Molecular weight = 274.06amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.007972 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.271673 B = 3511.331133 C = 4928.818831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.150 4.150 4 C -0.043 4.043 5 S -0.160 6.160 6 C -0.258 4.258 7 C 0.102 3.898 8 O -0.326 6.326 9 C 0.411 3.589 10 F -0.204 7.204 11 F -0.206 7.206 12 C -0.158 4.158 13 C 0.130 3.870 14 C -0.447 4.447 15 H 0.089 0.911 16 C 0.073 3.927 17 N -0.787 5.787 18 Si 0.911 3.089 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.260 1.260 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.167 0.833 30 H 0.135 0.865 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.777 2.748 3.797 4.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.154 4.154 4 C -0.155 4.155 5 S -0.003 6.003 6 C -0.281 4.281 7 C 0.058 3.942 8 O -0.244 6.244 9 C 0.319 3.681 10 F -0.186 7.186 11 F -0.188 7.188 12 C -0.178 4.178 13 C 0.125 3.875 14 C -0.476 4.476 15 H 0.107 0.893 16 C -0.145 4.145 17 N -0.412 5.412 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.184 1.184 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.132 0.868 29 H 0.183 0.817 30 H 0.152 0.848 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.916 2.575 4.349 5.136 hybrid contribution 1.108 -0.051 -1.144 1.593 sum 0.192 2.524 3.205 4.084 Atomic orbital electron populations 1.21655 0.96125 0.99891 1.01694 1.20260 0.95208 0.93537 1.01229 1.20070 1.07789 0.95991 0.91522 1.20242 1.07301 0.95510 0.92488 1.85352 1.19766 1.66690 1.28441 1.20986 1.14932 0.96555 0.95620 1.18710 0.98989 0.81268 0.95209 1.86544 1.81738 1.28533 1.27606 1.23115 0.74612 0.94024 0.76301 1.93065 1.48532 1.97160 1.79808 1.93060 1.65225 1.80626 1.79865 1.20826 1.07747 0.94752 0.94498 1.17153 0.88886 0.89793 0.91649 1.19610 1.20584 1.15706 0.91681 0.89305 1.25981 0.93322 0.93542 1.01700 1.69802 1.12371 1.26972 1.32012 0.86244 0.79301 0.80322 0.80581 1.19101 1.20235 1.18380 0.94023 0.93007 0.92835 0.91477 0.92487 0.97455 0.86839 0.81682 0.84766 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.87 37.16 0.37 -2.10 16 2 C -0.06 -1.31 5.00 -27.89 -0.14 -1.45 16 3 C -0.15 -3.50 5.21 -103.67 -0.54 -4.04 16 4 C -0.04 -0.99 6.10 -39.14 -0.24 -1.23 16 5 S -0.16 -3.12 23.95 -107.50 -2.57 -5.69 16 6 C -0.26 -5.98 8.01 -38.92 -0.31 -6.29 16 7 C 0.10 2.42 6.47 -39.32 -0.25 2.16 16 8 O -0.33 -6.70 10.42 -19.44 -0.20 -6.90 16 9 C 0.41 6.54 5.98 101.05 0.60 7.14 16 10 F -0.20 -3.52 15.55 2.25 0.04 -3.48 16 11 F -0.21 -3.62 15.59 2.25 0.04 -3.59 16 12 C -0.16 -4.02 8.62 -38.67 -0.33 -4.35 16 13 C 0.13 3.28 5.57 -106.87 -0.60 2.68 16 14 C -0.45 -10.95 8.14 -37.75 -0.31 -11.26 16 15 H 0.09 2.07 6.56 -52.49 -0.34 1.73 16 16 C 0.07 1.73 5.18 -17.35 -0.09 1.64 16 17 N -0.79 -19.34 10.87 55.54 0.60 -18.73 16 18 Si 0.91 17.68 29.59 -169.99 -5.03 12.65 16 19 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.05 1.00 7.87 -51.93 -0.41 0.59 16 25 H 0.07 1.38 6.76 -51.93 -0.35 1.03 16 26 H 0.06 1.10 6.77 -51.92 -0.35 0.75 16 27 H 0.06 1.14 9.07 97.61 0.89 2.02 16 28 H 0.11 2.51 5.06 -52.49 -0.27 2.24 16 29 H 0.17 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.13 3.53 6.13 -52.49 -0.32 3.20 16 31 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 282.38 15.07 4.26 4.26 Total: -1.00 -26.98 282.38 -6.28 -33.25 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -1.56 Total: 5.33 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.84 Total: -17.10 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.60 Total: -18.73 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.20 Total: -6.90 kcal Atomic # 9 Polarization: -7.14 SS G_CDS: 0.07 Total: -7.07 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.57 Total: -5.69 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.98 -6.28 -33.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659180.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.581 kcal (2) G-P(sol) polarization free energy of solvation -26.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds