Wall clock time and date at job start Mon Mar 30 2020 07:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46953 * 2 1 4 4 C 1.52991 * 109.47272 * 240.00162 * 2 1 3 5 5 C 1.50696 * 109.47344 * 174.99719 * 4 2 1 6 6 H 1.08000 * 120.00004 * 0.02562 * 5 4 2 7 7 C 1.37885 * 120.00359 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99568 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46544 * 60.00955 * 9 7 5 11 11 H 1.48496 * 109.47174 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47421 * 300.00749 * 9 7 5 13 13 O 1.42901 * 109.47334 * 119.99834 * 2 1 3 14 14 C 1.35928 * 116.99801 * 275.05472 * 13 2 1 15 15 C 1.38714 * 120.05445 * 5.47425 * 14 13 2 16 16 C 1.38158 * 119.97957 * 180.02562 * 15 14 13 17 17 C 1.38259 * 120.09047 * 0.02562 * 16 15 14 18 18 C 1.38365 * 120.10319 * 359.97438 * 17 16 15 19 19 Cl 1.73609 * 119.98843 * 180.02562 * 18 17 16 20 20 C 1.38362 * 120.01693 * 0.27677 * 18 17 16 21 21 Cl 1.73599 * 120.04224 * 179.72225 * 20 18 17 22 22 H 1.09004 * 109.47036 * 300.00122 * 1 2 3 23 23 H 1.08998 * 109.46933 * 60.00174 * 1 2 3 24 24 H 1.08994 * 109.46690 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47393 * 294.99958 * 4 2 1 26 26 H 1.09002 * 109.47454 * 54.99464 * 4 2 1 27 27 H 0.97001 * 120.00496 * 179.97438 * 8 7 5 28 28 H 1.07994 * 120.01622 * 0.02562 * 15 14 13 29 29 H 1.07998 * 119.95763 * 179.97438 * 16 15 14 30 30 H 1.07999 * 119.95139 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2995 9 14 6.0921 -1.0609 -2.4369 10 1 6.6846 -1.6861 -1.2272 11 1 6.5871 -1.7609 -3.6493 12 1 6.4844 0.3700 -2.4972 13 8 2.0064 -0.6736 1.1668 14 6 2.1115 0.0626 2.3046 15 6 1.6576 1.3731 2.3285 16 6 1.7657 2.1201 3.4857 17 6 2.3263 1.5634 4.6203 18 6 2.7802 0.2565 4.6005 19 17 3.4831 -0.4397 6.0271 20 6 2.6789 -0.4939 3.4424 21 17 3.2548 -2.1313 3.4147 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 1.7517 -1.7714 -1.2056 26 1 1.6054 -0.2617 -2.1369 27 1 4.0608 -2.2444 -4.0349 28 1 1.2198 1.8095 1.4430 29 1 1.4125 3.1406 3.5038 30 1 2.4100 2.1496 5.5236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710013460.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:56 Heat of formation + Delta-G solvation = -54.752954 kcal Electronic energy + Delta-G solvation = -16609.949636 eV Core-core repulsion = 13649.304544 eV Total energy + Delta-G solvation = -2960.645092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 274.027 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31291 -38.99739 -37.44466 -37.34208 -35.45872 -33.50404 -31.60987 -30.69574 -29.35480 -25.37062 -24.32203 -23.63344 -21.58823 -19.48123 -18.52998 -17.43765 -17.31016 -16.56518 -16.36904 -16.15277 -15.20334 -14.92731 -14.80748 -14.29412 -13.83483 -13.50433 -13.43349 -13.12384 -12.98470 -12.80768 -12.64885 -12.47434 -12.40718 -12.13578 -12.09287 -11.80487 -11.69734 -11.31202 -11.07401 -10.58345 -9.78327 -9.19451 -8.21158 -6.29200 -0.08121 0.22259 0.79996 1.27640 1.36953 1.40003 1.47249 2.32948 2.39531 2.50387 3.13923 3.83131 3.88662 3.97392 4.08189 4.23906 4.28962 4.36397 4.46624 4.80211 4.95145 5.00327 5.12964 5.20970 5.28638 5.35835 5.45243 5.60569 5.76554 6.17779 6.51432 6.82194 7.38110 8.90263 Molecular weight = 274.03amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.005920 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.622357 B = 4728.501908 C = 5383.809170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 H 0.076 0.924 4 C 0.029 3.971 5 C -0.528 4.528 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.264 1.264 13 O -0.306 6.306 14 C 0.140 3.860 15 C -0.204 4.204 16 C -0.048 4.048 17 C -0.141 4.141 18 C -0.003 4.003 19 Cl -0.047 7.047 20 C -0.102 4.102 21 Cl -0.061 7.061 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.053 0.947 25 H -0.004 1.004 26 H 0.029 0.971 27 H 0.264 0.736 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 9.324 16.391 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.008 4.008 5 C -0.566 4.566 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.188 1.188 13 O -0.219 6.219 14 C 0.092 3.908 15 C -0.223 4.223 16 C -0.066 4.066 17 C -0.160 4.160 18 C -0.030 4.030 19 Cl -0.018 7.018 20 C -0.130 4.130 21 Cl -0.033 7.033 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.174 0.826 29 H 0.199 0.801 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.839 8.801 16.298 19.144 hybrid contribution 1.097 -0.731 -0.455 1.395 sum -3.743 8.070 15.843 18.169 Atomic orbital electron populations 1.22331 0.93697 1.02872 1.03628 1.22731 0.94234 0.96423 0.82957 0.90629 1.19108 0.95376 0.95127 0.91173 1.21408 0.93297 1.34313 1.07596 0.93122 1.25782 1.03013 0.94927 0.95429 1.70042 1.37429 1.36783 1.12729 0.85697 0.80324 0.78867 0.77417 1.20243 1.20528 1.18824 1.86305 1.80281 1.38694 1.16661 1.19029 0.93878 0.91621 0.86305 1.21732 1.05957 0.92417 1.02201 1.21446 0.94179 1.01100 0.89826 1.21293 1.01241 0.91873 1.01580 1.20688 1.00848 0.94647 0.86851 1.98372 1.82337 1.84731 1.36385 1.20219 1.09426 0.89011 0.94349 1.98361 1.87471 1.18733 1.98693 0.90459 0.89658 0.92825 0.98539 0.95272 0.92745 0.82594 0.80089 0.81023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 9.17 71.98 0.66 -4.46 16 2 C 0.09 3.60 2.17 30.59 0.07 3.67 16 3 H 0.08 2.75 6.31 -2.38 -0.02 2.73 16 4 C 0.03 1.49 4.68 29.84 0.14 1.63 16 5 C -0.53 -29.98 8.88 25.60 0.23 -29.76 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 9 Si 0.95 45.20 29.54 68.60 2.03 47.22 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 13 O -0.31 -12.77 9.01 -92.74 -0.84 -13.61 16 14 C 0.14 4.79 6.59 22.52 0.15 4.94 16 15 C -0.20 -5.24 8.24 22.36 0.18 -5.06 16 16 C -0.05 -0.87 10.04 22.26 0.22 -0.65 16 17 C -0.14 -2.77 9.83 22.30 0.22 -2.55 16 18 C 0.00 -0.07 6.32 22.33 0.14 0.07 16 19 Cl -0.05 -1.15 27.96 -2.72 -0.08 -1.23 16 20 C -0.10 -3.40 6.34 22.43 0.14 -3.26 16 21 Cl -0.06 -2.23 27.51 -2.72 -0.07 -2.30 16 22 H 0.08 1.91 6.91 -2.39 -0.02 1.89 16 23 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 26 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 27 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 28 H 0.16 3.57 5.43 -2.91 -0.02 3.55 16 29 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -66.77 289.73 5.09 -61.68 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: 1.16 Total: -1.28 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 2.61 Total: -34.59 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.28 Total: -55.90 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.84 Total: -13.61 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 17 Polarization: -3.38 SS G_CDS: -0.15 Total: -3.53 kcal Total: -66.77 5.09 -61.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710013460.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.927 kcal (2) G-P(sol) polarization free energy of solvation -66.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds