Wall clock time and date at job start Mon Mar 30 2020 08:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46879 * 2 1 4 4 C 1.53001 * 109.47431 * 120.00036 * 2 1 3 5 5 H 1.09003 * 109.47030 * 59.96966 * 4 2 1 6 6 C 1.50703 * 109.47175 * 299.97304 * 4 2 1 7 7 H 1.08003 * 119.99824 * 275.51869 * 6 4 2 8 8 C 1.37871 * 119.99965 * 95.51288 * 6 4 2 9 9 N 1.31513 * 120.00111 * 9.45013 * 8 6 4 10 10 Si 1.86801 * 119.99851 * 189.44997 * 8 6 4 11 11 H 1.48493 * 109.47318 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47039 * 120.00316 * 10 8 6 13 13 H 1.48500 * 109.47151 * 240.00013 * 10 8 6 14 14 C 1.53000 * 109.47130 * 179.97438 * 4 2 1 15 15 H 1.08997 * 108.24109 * 56.74405 * 14 4 2 16 16 C 1.53285 * 108.34603 * 299.62658 * 14 4 2 17 17 C 1.51264 * 105.02375 * 145.10816 * 16 14 4 18 18 C 1.54651 * 109.54669 * 105.24263 * 17 16 14 19 19 S 1.82282 * 111.13627 * 320.52558 * 18 17 16 20 20 O 1.42103 * 107.93810 * 74.41795 * 19 18 17 21 21 O 1.42100 * 107.94147 * 203.70011 * 19 18 17 22 22 C 1.79147 * 105.82475 * 319.05843 * 19 18 17 23 23 C 1.44549 * 108.33186 * 174.01575 * 14 4 2 24 24 H 1.09001 * 109.47286 * 307.50455 * 1 2 3 25 25 H 1.09000 * 109.47312 * 67.50388 * 1 2 3 26 26 H 1.08996 * 109.47177 * 187.50493 * 1 2 3 27 27 H 1.08994 * 109.47122 * 240.00229 * 2 1 3 28 28 H 1.09005 * 109.46957 * 185.53112 * 3 2 1 29 29 H 1.08998 * 109.47313 * 305.53326 * 3 2 1 30 30 H 1.09001 * 109.46893 * 65.53503 * 3 2 1 31 31 H 0.97000 * 119.99993 * 179.97438 * 9 8 6 32 32 H 1.09000 * 110.30177 * 26.24246 * 16 14 4 33 33 H 1.09007 * 110.34519 * 263.99242 * 16 14 4 34 34 H 1.09001 * 109.45206 * 345.22260 * 17 16 14 35 35 H 1.08996 * 109.45220 * 225.26123 * 17 16 14 36 36 H 1.09000 * 109.14333 * 80.95772 * 18 17 16 37 37 H 1.09002 * 109.14087 * 200.15424 * 18 17 16 38 38 H 1.08997 * 109.45003 * 209.32074 * 22 19 18 39 39 H 1.09004 * 109.44479 * 329.26199 * 22 19 18 40 40 H 1.08997 * 109.23290 * 65.07201 * 23 14 4 41 41 H 1.08997 * 109.19494 * 305.68080 * 23 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6763 -1.7488 1.2495 6 6 1.5383 -0.0105 2.4797 7 1 2.0765 0.8414 2.8684 8 6 0.3922 -0.4477 3.1092 9 7 -0.1593 -1.5874 2.7538 10 14 -0.3773 0.5790 4.4669 11 1 0.4300 1.8075 4.6766 12 1 -1.7606 0.9551 4.0795 13 1 -0.4127 -0.2100 5.7245 14 6 3.5700 -0.7218 1.2488 15 1 3.9115 0.3116 1.1898 16 6 4.0519 -1.4578 -0.0064 17 6 5.3129 -0.7347 -0.4251 18 6 6.5466 -1.5942 -0.0632 19 16 6.3298 -2.4072 1.5538 20 8 5.4078 -3.4755 1.3865 21 8 7.6198 -2.6981 2.0739 22 6 5.5690 -1.1831 2.6179 23 6 4.0248 -1.2802 2.5022 24 1 -0.3634 0.6257 0.8153 25 1 -0.3634 0.3932 -0.9494 26 1 -0.3633 -1.0188 0.1342 27 1 1.8933 -0.5138 -0.8900 28 1 3.1254 1.4442 -0.0991 29 1 1.5979 1.9842 -0.8363 30 1 1.7597 1.9270 0.9354 31 1 -0.9654 -1.8952 3.1969 32 1 3.3005 -1.3951 -0.7935 33 1 4.2725 -2.4996 0.2263 34 1 5.3720 0.2220 0.0938 35 1 5.2928 -0.5635 -1.5013 36 1 6.6891 -2.3557 -0.8300 37 1 7.4288 -0.9552 -0.0258 38 1 5.8676 -1.3640 3.6505 39 1 5.8933 -0.1874 2.3154 40 1 3.7256 -2.3268 2.5585 41 1 3.5680 -0.7315 3.3257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259791783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:28 Heat of formation + Delta-G solvation = -84.911437 kcal Electronic energy + Delta-G solvation = -21308.458196 eV Core-core repulsion = 18315.339159 eV Total energy + Delta-G solvation = -2993.119037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.88042 -36.64181 -35.78766 -34.81177 -32.88230 -31.94604 -29.29959 -27.01953 -26.03650 -24.64036 -23.25501 -21.63788 -19.98061 -18.39411 -18.33263 -16.68886 -16.57745 -15.81946 -15.54624 -14.57327 -14.22892 -14.13599 -13.80126 -13.39727 -13.11681 -13.09146 -12.66313 -12.19635 -12.09374 -11.85284 -11.76077 -11.62368 -11.33944 -11.28950 -11.19479 -10.93243 -10.78282 -10.57918 -10.40999 -10.19783 -9.98617 -9.89721 -9.86838 -9.58699 -9.18500 -8.72256 -8.67226 -8.34555 -6.01978 -4.00190 0.25001 3.04947 3.26445 3.36751 3.38444 3.86615 4.18127 4.41757 4.67307 4.76696 4.99990 5.19263 5.24150 5.29079 5.46982 5.66705 5.76390 5.85309 6.03694 6.10722 6.15547 6.24109 6.29820 6.42002 6.59353 6.63380 6.70003 6.85503 6.94736 7.02522 7.09432 7.23339 7.35680 7.39878 7.56112 7.76318 7.85158 7.97759 8.45267 9.06851 9.59729 11.06632 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023263 B = 0.006731 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.334848 B = 4159.165482 C = 4780.453110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.084 4.084 3 C -0.136 4.136 4 C 0.042 3.958 5 H 0.065 0.935 6 C -0.505 4.505 7 H 0.053 0.947 8 C 0.072 3.928 9 N -0.882 5.882 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.287 1.287 14 C -0.099 4.099 15 H 0.060 0.940 16 C -0.183 4.183 17 C -0.099 4.099 18 C -0.606 4.606 19 S 2.417 3.583 20 O -0.935 6.935 21 O -0.968 6.968 22 C -0.618 4.618 23 C -0.081 4.081 24 H 0.056 0.944 25 H 0.012 0.988 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.025 0.975 30 H 0.062 0.938 31 H 0.259 0.741 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.082 0.918 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 2.749 -5.264 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.103 4.103 3 C -0.193 4.193 4 C 0.024 3.976 5 H 0.083 0.917 6 C -0.544 4.544 7 H 0.071 0.929 8 C -0.131 4.131 9 N -0.519 5.519 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.213 1.213 14 C -0.117 4.117 15 H 0.078 0.922 16 C -0.221 4.221 17 C -0.137 4.137 18 C -0.735 4.735 19 S 2.602 3.398 20 O -0.932 6.932 21 O -0.965 6.965 22 C -0.749 4.749 23 C -0.119 4.119 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.799 1.797 -4.998 11.146 hybrid contribution -0.572 1.467 0.542 1.665 sum 9.227 3.264 -4.456 10.754 Atomic orbital electron populations 1.21569 0.96060 1.02196 0.97954 1.21245 0.95537 0.95028 0.98456 1.21806 0.98866 0.97975 1.00656 1.19063 0.87552 0.98638 0.92360 0.91722 1.20979 1.08980 1.13837 1.10561 0.92894 1.24875 0.97419 0.94434 0.96332 1.69936 1.20760 1.18881 1.42358 0.86837 0.79619 0.80879 0.82445 1.19918 1.21111 1.21286 1.20137 1.01641 0.98140 0.91796 0.92150 1.22555 0.96981 1.01808 1.00729 1.21645 0.91133 0.98000 1.02970 1.30704 1.07471 1.12772 1.22526 1.07922 0.74982 0.78499 0.78437 1.93519 1.63868 1.50509 1.85307 1.93511 1.40879 1.83612 1.78508 1.30591 1.11704 1.17500 1.15100 1.20218 0.85596 1.04531 1.01598 0.92526 0.96851 0.92501 0.94571 0.94373 0.95630 0.91857 0.93099 0.89092 0.88253 0.90371 0.90895 0.85364 0.85969 0.85082 0.85660 0.89906 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.25 37.15 0.31 -2.24 16 2 C -0.08 -1.66 2.49 -90.62 -0.23 -1.88 16 3 C -0.14 -2.42 8.51 37.16 0.32 -2.10 16 4 C 0.04 0.91 1.35 -91.77 -0.12 0.79 16 5 H 0.06 1.62 7.19 -51.93 -0.37 1.25 16 6 C -0.51 -12.02 4.53 -34.44 -0.16 -12.18 16 7 H 0.05 1.26 7.56 -52.48 -0.40 0.87 16 8 C 0.07 1.81 4.33 -17.82 -0.08 1.74 16 9 N -0.88 -23.53 12.27 55.43 0.68 -22.85 16 10 Si 0.87 20.06 29.55 -169.99 -5.02 15.04 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 C -0.10 -1.73 0.95 -94.41 -0.09 -1.82 16 15 H 0.06 0.99 4.87 -51.93 -0.25 0.74 16 16 C -0.18 -2.83 5.09 -27.46 -0.14 -2.97 16 17 C -0.10 -1.18 5.60 -26.74 -0.15 -1.33 16 18 C -0.61 -6.54 6.49 38.03 0.25 -6.29 16 19 S 2.42 33.86 4.89 -107.50 -0.53 33.34 16 20 O -0.93 -16.51 14.11 -57.93 -0.82 -17.32 16 21 O -0.97 -16.08 18.05 -57.93 -1.05 -17.13 16 22 C -0.62 -8.26 5.83 38.30 0.22 -8.03 16 23 C -0.08 -1.43 4.37 -29.53 -0.13 -1.56 16 24 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 1.30 7.88 -51.93 -0.41 0.89 16 27 H 0.04 0.67 5.95 -51.93 -0.31 0.36 16 28 H 0.04 0.60 6.65 -51.93 -0.35 0.26 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 1.23 6.90 -51.93 -0.36 0.87 16 31 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.09 1.43 5.52 -51.93 -0.29 1.14 16 33 H 0.10 1.62 4.47 -51.92 -0.23 1.39 16 34 H 0.08 0.85 6.41 -51.93 -0.33 0.52 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.13 1.58 8.14 -51.74 -0.42 1.16 16 39 H 0.12 1.32 7.68 -51.74 -0.40 0.93 16 40 H 0.08 1.60 7.12 -51.93 -0.37 1.23 16 41 H 0.11 2.07 6.46 -51.93 -0.34 1.73 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -29.75 306.77 -8.54 -38.29 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.43 Total: 3.89 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 0.00 Total: -37.88 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.68 Total: -22.85 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.86 Total: -34.45 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 33.86 SS G_CDS: -0.53 Total: 33.34 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.75 -8.54 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.626 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds