Wall clock time and date at job start Mon Mar 30 2020 08:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46879 * 2 1 4 4 C 1.53001 * 109.47431 * 120.00036 * 2 1 3 5 5 H 1.09003 * 109.47030 * 59.96966 * 4 2 1 6 6 C 1.50703 * 109.47175 * 299.97304 * 4 2 1 7 7 H 1.08003 * 119.99824 * 275.51869 * 6 4 2 8 8 C 1.37871 * 119.99965 * 95.51288 * 6 4 2 9 9 N 1.31513 * 120.00111 * 9.45013 * 8 6 4 10 10 Si 1.86801 * 119.99851 * 189.44997 * 8 6 4 11 11 H 1.48493 * 109.47318 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47039 * 120.00316 * 10 8 6 13 13 H 1.48500 * 109.47151 * 240.00013 * 10 8 6 14 14 C 1.53000 * 109.47130 * 179.97438 * 4 2 1 15 15 H 1.08997 * 108.24109 * 56.74405 * 14 4 2 16 16 C 1.53285 * 108.34603 * 299.62658 * 14 4 2 17 17 C 1.51264 * 105.02375 * 145.10816 * 16 14 4 18 18 C 1.54651 * 109.54669 * 105.24263 * 17 16 14 19 19 S 1.82282 * 111.13627 * 320.52558 * 18 17 16 20 20 O 1.42103 * 107.93810 * 74.41795 * 19 18 17 21 21 O 1.42100 * 107.94147 * 203.70011 * 19 18 17 22 22 C 1.79147 * 105.82475 * 319.05843 * 19 18 17 23 23 C 1.44549 * 108.33186 * 174.01575 * 14 4 2 24 24 H 1.09001 * 109.47286 * 307.50455 * 1 2 3 25 25 H 1.09000 * 109.47312 * 67.50388 * 1 2 3 26 26 H 1.08996 * 109.47177 * 187.50493 * 1 2 3 27 27 H 1.08994 * 109.47122 * 240.00229 * 2 1 3 28 28 H 1.09005 * 109.46957 * 185.53112 * 3 2 1 29 29 H 1.08998 * 109.47313 * 305.53326 * 3 2 1 30 30 H 1.09001 * 109.46893 * 65.53503 * 3 2 1 31 31 H 0.97000 * 119.99993 * 179.97438 * 9 8 6 32 32 H 1.09000 * 110.30177 * 26.24246 * 16 14 4 33 33 H 1.09007 * 110.34519 * 263.99242 * 16 14 4 34 34 H 1.09001 * 109.45206 * 345.22260 * 17 16 14 35 35 H 1.08996 * 109.45220 * 225.26123 * 17 16 14 36 36 H 1.09000 * 109.14333 * 80.95772 * 18 17 16 37 37 H 1.09002 * 109.14087 * 200.15424 * 18 17 16 38 38 H 1.08997 * 109.45003 * 209.32074 * 22 19 18 39 39 H 1.09004 * 109.44479 * 329.26199 * 22 19 18 40 40 H 1.08997 * 109.23290 * 65.07201 * 23 14 4 41 41 H 1.08997 * 109.19494 * 305.68080 * 23 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6763 -1.7488 1.2495 6 6 1.5383 -0.0105 2.4797 7 1 2.0765 0.8414 2.8684 8 6 0.3922 -0.4477 3.1092 9 7 -0.1593 -1.5874 2.7538 10 14 -0.3773 0.5790 4.4669 11 1 0.4300 1.8075 4.6766 12 1 -1.7606 0.9551 4.0795 13 1 -0.4127 -0.2100 5.7245 14 6 3.5700 -0.7218 1.2488 15 1 3.9115 0.3116 1.1898 16 6 4.0519 -1.4578 -0.0064 17 6 5.3129 -0.7347 -0.4251 18 6 6.5466 -1.5942 -0.0632 19 16 6.3298 -2.4072 1.5538 20 8 5.4078 -3.4755 1.3865 21 8 7.6198 -2.6981 2.0739 22 6 5.5690 -1.1831 2.6179 23 6 4.0248 -1.2802 2.5022 24 1 -0.3634 0.6257 0.8153 25 1 -0.3634 0.3932 -0.9494 26 1 -0.3633 -1.0188 0.1342 27 1 1.8933 -0.5138 -0.8900 28 1 3.1254 1.4442 -0.0991 29 1 1.5979 1.9842 -0.8363 30 1 1.7597 1.9270 0.9354 31 1 -0.9654 -1.8952 3.1969 32 1 3.3005 -1.3951 -0.7935 33 1 4.2725 -2.4996 0.2263 34 1 5.3720 0.2220 0.0938 35 1 5.2928 -0.5635 -1.5013 36 1 6.6891 -2.3557 -0.8300 37 1 7.4288 -0.9552 -0.0258 38 1 5.8676 -1.3640 3.6505 39 1 5.8933 -0.1874 2.3154 40 1 3.7256 -2.3268 2.5585 41 1 3.5680 -0.7315 3.3257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259791783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:27 Heat of formation + Delta-G solvation = -104.162050 kcal Electronic energy + Delta-G solvation = -21309.292966 eV Core-core repulsion = 18315.339159 eV Total energy + Delta-G solvation = -2993.953806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.139 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.26796 -37.89383 -36.99000 -36.21497 -34.11987 -33.72923 -30.61107 -28.48703 -27.58266 -26.09085 -24.79753 -22.78786 -21.38690 -19.99782 -19.46126 -18.19972 -17.73537 -17.30075 -16.68877 -16.38079 -15.62466 -15.35256 -15.16128 -14.60848 -14.40629 -14.36434 -14.14249 -13.62869 -13.45308 -13.13609 -13.04838 -12.96098 -12.93993 -12.79598 -12.65317 -12.45030 -12.31804 -12.11594 -11.75140 -11.64010 -11.54744 -11.26989 -11.17525 -11.00962 -10.73855 -10.35893 -10.34618 -10.20194 -7.97317 -5.97083 -0.81396 1.39062 1.45584 1.51316 2.02166 2.50354 2.82723 3.09071 3.34430 3.67408 3.86886 3.93629 4.07360 4.19630 4.39599 4.55892 4.58435 4.64105 4.75953 4.77548 4.81924 4.96318 5.06002 5.09799 5.15953 5.27171 5.35692 5.37111 5.44180 5.48283 5.66910 5.71783 5.79438 5.81660 5.84972 5.93610 6.17392 6.19555 6.59431 7.18399 7.63750 9.11148 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.023263 B = 0.006731 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.334848 B = 4159.165482 C = 4780.453110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.129 4.129 4 C 0.039 3.961 5 H 0.016 0.984 6 C -0.490 4.490 7 H 0.055 0.945 8 C 0.024 3.976 9 N -0.917 5.917 10 Si 0.920 3.080 11 H -0.264 1.264 12 H -0.291 1.291 13 H -0.294 1.294 14 C -0.093 4.093 15 H 0.083 0.917 16 C -0.186 4.186 17 C -0.099 4.099 18 C -0.578 4.578 19 S 2.412 3.588 20 O -0.985 6.985 21 O -0.998 6.998 22 C -0.611 4.611 23 C -0.083 4.083 24 H 0.031 0.969 25 H 0.038 0.962 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.252 0.748 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.048 0.952 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 5.337 -7.143 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 C -0.186 4.186 4 C 0.020 3.980 5 H 0.034 0.966 6 C -0.529 4.529 7 H 0.073 0.927 8 C -0.174 4.174 9 N -0.557 5.557 10 Si 0.748 3.252 11 H -0.188 1.188 12 H -0.217 1.217 13 H -0.221 1.221 14 C -0.112 4.112 15 H 0.102 0.898 16 C -0.224 4.224 17 C -0.137 4.137 18 C -0.711 4.711 19 S 2.601 3.399 20 O -0.982 6.982 21 O -0.995 6.995 22 C -0.742 4.742 23 C -0.121 4.121 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.067 0.933 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.374 4.380 -6.836 14.800 hybrid contribution -1.371 0.666 1.080 1.868 sum 11.003 5.046 -5.756 13.404 Atomic orbital electron populations 1.21492 0.97555 0.99838 0.98278 1.21212 0.94288 0.96775 0.98047 1.21720 1.00692 0.95807 1.00405 1.19017 0.90694 0.95773 0.92492 0.96575 1.21286 1.07938 1.12999 1.10664 0.92685 1.25431 0.98466 0.95200 0.98340 1.70080 1.21227 1.20500 1.43927 0.86105 0.78768 0.80021 0.80320 1.18785 1.21722 1.22066 1.20120 0.98414 0.99777 0.92861 0.89848 1.22509 0.99175 1.01413 0.99295 1.21671 0.88912 0.98189 1.04969 1.30469 1.08792 1.13368 1.18489 1.07809 0.73659 0.78475 0.79941 1.93472 1.64875 1.53459 1.86358 1.93473 1.41577 1.84450 1.80038 1.30469 1.07921 1.19618 1.16195 1.20021 0.88946 1.02063 1.01060 0.94935 0.94267 0.95582 0.92731 0.91619 0.93774 0.93840 0.93866 0.89483 0.89694 0.88258 0.88129 0.83616 0.81924 0.84194 0.81700 0.93296 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.85 8.25 71.98 0.59 -4.26 16 2 C -0.08 -3.23 2.49 -10.79 -0.03 -3.25 16 3 C -0.13 -4.15 8.51 71.98 0.61 -3.53 16 4 C 0.04 1.69 1.35 -11.54 -0.02 1.68 16 5 H 0.02 0.85 7.19 -2.39 -0.02 0.83 16 6 C -0.49 -23.66 4.53 25.60 0.12 -23.54 16 7 H 0.05 2.60 7.56 -2.91 -0.02 2.57 16 8 C 0.02 1.24 4.33 84.65 0.37 1.61 16 9 N -0.92 -51.70 12.27 21.44 0.26 -51.43 16 10 Si 0.92 42.21 29.55 68.60 2.03 44.24 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 13 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 14 C -0.09 -3.14 0.95 -13.25 -0.01 -3.15 16 15 H 0.08 2.40 4.87 -2.39 -0.01 2.39 16 16 C -0.19 -5.31 5.09 30.12 0.15 -5.16 16 17 C -0.10 -1.80 5.60 30.59 0.17 -1.63 16 18 C -0.58 -9.47 6.49 72.54 0.47 -9.00 16 19 S 2.41 63.34 4.89 -56.49 -0.28 63.06 16 20 O -0.98 -35.39 14.11 -127.28 -1.80 -37.18 16 21 O -1.00 -31.59 18.05 -127.28 -2.30 -33.89 16 22 C -0.61 -15.06 5.83 72.72 0.42 -14.63 16 23 C -0.08 -2.90 4.37 28.78 0.13 -2.77 16 24 H 0.03 1.49 6.95 -2.39 -0.02 1.48 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.02 1.22 7.88 -2.39 -0.02 1.20 16 27 H 0.05 1.90 5.95 -2.39 -0.01 1.88 16 28 H 0.06 1.73 6.65 -2.38 -0.02 1.72 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.56 6.90 -2.39 -0.02 1.55 16 31 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.09 2.53 5.52 -2.39 -0.01 2.52 16 33 H 0.08 2.73 4.47 -2.38 -0.01 2.72 16 34 H 0.10 1.44 6.41 -2.39 -0.02 1.43 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.16 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.14 3.19 8.14 -2.51 -0.02 3.17 16 39 H 0.17 2.69 7.68 -2.50 -0.02 2.67 16 40 H 0.05 2.02 7.12 -2.39 -0.02 2.00 16 41 H 0.08 3.30 6.46 -2.39 -0.02 3.28 16 Total: -1.00 -69.21 306.77 1.91 -67.31 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 1.01 Total: 15.54 kcal Atomic # 6 Polarization: -70.63 SS G_CDS: 2.98 Total: -67.65 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.26 Total: -51.43 kcal Atomic # 8 Polarization: -66.98 SS G_CDS: -4.09 Total: -71.07 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: 63.34 SS G_CDS: -0.28 Total: 63.06 kcal Total: -69.21 1.91 -67.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259791783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.857 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds