Wall clock time and date at job start Mon Mar 30 2020 08:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47509 * 2 1 4 4 C 1.53006 * 109.47077 * 120.00153 * 2 1 3 5 5 H 1.09000 * 109.47043 * 187.37614 * 4 2 1 6 6 C 1.50706 * 109.46757 * 307.37582 * 4 2 1 7 7 H 1.07991 * 119.99584 * 120.81785 * 6 4 2 8 8 C 1.37874 * 119.99901 * 300.54234 * 6 4 2 9 9 N 1.31515 * 120.00318 * 329.11614 * 8 6 4 10 10 Si 1.86796 * 119.99954 * 149.11597 * 8 6 4 11 11 H 1.48502 * 109.47064 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47255 * 119.99685 * 10 8 6 13 13 H 1.48500 * 109.47549 * 240.00095 * 10 8 6 14 14 C 1.53001 * 109.47114 * 67.37626 * 4 2 1 15 15 H 1.09003 * 109.22494 * 302.59415 * 14 4 2 16 16 C 1.44549 * 109.22813 * 62.00356 * 14 4 2 17 17 C 1.53300 * 115.20218 * 184.22335 * 16 14 4 18 18 C 1.51258 * 105.01340 * 266.60259 * 17 16 14 19 19 C 1.54653 * 109.55906 * 105.23280 * 18 17 16 20 20 S 1.82283 * 111.13598 * 320.51350 * 19 18 17 21 21 O 1.42110 * 107.93721 * 74.41693 * 20 19 18 22 22 O 1.42098 * 107.94367 * 203.70118 * 20 19 18 23 23 C 1.55148 * 109.22945 * 183.22548 * 14 4 2 24 24 H 1.09000 * 109.47391 * 302.72162 * 1 2 3 25 25 H 1.09011 * 109.47145 * 62.71426 * 1 2 3 26 26 H 1.08998 * 109.47800 * 182.71619 * 1 2 3 27 27 H 1.09001 * 109.47290 * 240.00104 * 2 1 3 28 28 H 1.08999 * 109.46913 * 172.27310 * 3 2 1 29 29 H 1.09004 * 109.46931 * 292.27373 * 3 2 1 30 30 H 1.09001 * 109.46937 * 52.27188 * 3 2 1 31 31 H 0.96993 * 120.00166 * 180.02562 * 9 8 6 32 32 H 1.09003 * 108.33224 * 305.70821 * 16 14 4 33 33 H 1.08999 * 108.33488 * 62.92087 * 16 14 4 34 34 H 1.09004 * 110.32369 * 25.48218 * 17 16 14 35 35 H 1.09008 * 110.32050 * 147.73375 * 17 16 14 36 36 H 1.09001 * 109.45587 * 225.25691 * 18 17 16 37 37 H 1.08996 * 109.45762 * 345.20477 * 18 17 16 38 38 H 1.09002 * 109.14846 * 80.94368 * 19 18 17 39 39 H 1.09004 * 109.14590 * 200.14296 * 19 18 17 40 40 H 1.09000 * 109.44662 * 285.27430 * 23 14 4 41 41 H 1.09001 * 109.44760 * 45.18536 * 23 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1219 -0.6085 1.3177 6 6 1.3941 -0.1240 2.4729 7 1 0.8030 -0.7454 3.1292 8 6 1.5628 1.2145 2.7576 9 7 2.6728 1.8266 2.4070 10 14 0.2147 2.1585 3.6413 11 1 -0.9239 1.2478 3.9235 12 1 0.7449 2.6994 4.9186 13 1 -0.2489 3.2787 2.7838 14 6 1.6868 -2.2073 1.1601 15 1 0.6080 -2.3136 1.0454 16 6 2.3469 -2.7854 0.0114 17 6 2.0055 -4.2537 -0.2673 18 6 3.0806 -5.0473 0.4413 19 6 2.4953 -5.6810 1.7249 20 16 1.3596 -4.5304 2.5669 21 8 0.1510 -4.4838 1.8207 22 8 1.2981 -4.9005 3.9375 23 6 2.1335 -2.9179 2.4649 24 1 -0.3634 0.5555 0.8646 25 1 -0.3634 0.4712 -0.9134 26 1 -0.3634 -1.0264 0.0487 27 1 1.8933 -0.5138 -0.8900 28 1 3.1212 1.4455 0.1382 29 1 1.7939 1.9149 -0.9510 30 1 1.5683 1.9947 0.8128 31 1 2.7915 2.7681 2.6076 32 1 2.0812 -2.1986 -0.8680 33 1 3.4239 -2.7087 0.1602 34 1 1.0242 -4.4980 0.1394 35 1 2.0328 -4.4519 -1.3389 36 1 3.4452 -5.8346 -0.2185 37 1 3.9051 -4.3855 0.7066 38 1 1.9531 -6.5888 1.4602 39 1 3.3108 -5.9363 2.4015 40 1 3.2172 -3.0351 2.4615 41 1 1.8365 -2.3178 3.3250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260406119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:15 Heat of formation + Delta-G solvation = -66.271084 kcal Electronic energy + Delta-G solvation = -21409.790559 eV Core-core repulsion = 18417.479828 eV Total energy + Delta-G solvation = -2992.310731 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.83063 -36.62611 -35.69255 -35.56581 -32.81885 -31.57826 -29.16588 -27.00364 -25.80178 -25.56479 -23.03441 -21.28384 -20.36885 -18.48071 -18.27066 -16.75072 -16.26446 -15.93459 -15.47443 -14.64883 -14.38834 -14.07053 -13.88871 -13.57987 -13.34340 -12.78700 -12.73055 -12.15834 -12.09033 -11.79728 -11.72699 -11.60931 -11.39803 -11.25375 -11.10885 -10.80227 -10.73089 -10.50756 -10.33296 -10.27367 -10.23765 -10.02325 -9.89013 -9.55947 -9.29921 -9.00588 -8.83161 -7.68903 -6.20297 -3.94327 0.36139 3.19235 3.26220 3.38659 3.45372 3.98193 4.21601 4.41596 4.61128 4.76705 5.03750 5.05192 5.09975 5.26438 5.41985 5.60355 5.67541 5.84948 5.89477 6.05534 6.18877 6.20923 6.33192 6.38008 6.44052 6.49284 6.71023 6.77280 6.86973 6.91172 7.00258 7.26970 7.31574 7.47667 7.52752 7.84353 7.87603 7.97352 8.39759 8.94350 9.53583 10.87071 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.007251 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.179445 B = 3860.634016 C = 4473.404914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 C -0.128 4.128 4 C 0.062 3.938 5 H 0.035 0.965 6 C -0.528 4.528 7 H 0.059 0.941 8 C 0.084 3.916 9 N -0.851 5.851 10 Si 0.849 3.151 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.280 1.280 14 C -0.060 4.060 15 H 0.088 0.912 16 C -0.134 4.134 17 C -0.182 4.182 18 C -0.100 4.100 19 C -0.613 4.613 20 S 2.410 3.590 21 O -0.944 6.944 22 O -0.964 6.964 23 C -0.592 4.592 24 H 0.063 0.937 25 H 0.023 0.977 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.053 0.947 29 H -0.003 1.003 30 H 0.082 0.918 31 H 0.260 0.740 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 -10.314 -5.150 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 C -0.185 4.185 4 C 0.043 3.957 5 H 0.053 0.947 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.119 4.119 9 N -0.487 5.487 10 Si 0.675 3.325 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.206 1.206 14 C -0.080 4.080 15 H 0.106 0.894 16 C -0.171 4.171 17 C -0.219 4.219 18 C -0.138 4.138 19 C -0.741 4.741 20 S 2.595 3.405 21 O -0.941 6.941 22 O -0.961 6.961 23 C -0.724 4.724 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.016 0.984 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.124 0.876 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.580 -10.398 -4.739 11.536 hybrid contribution 0.109 0.727 0.228 0.770 sum 1.689 -9.670 -4.511 10.804 Atomic orbital electron populations 1.21781 0.97006 1.00493 0.99797 1.21304 0.94771 0.96809 0.97279 1.22229 1.01816 0.96300 0.98181 1.18791 0.97176 0.86335 0.93424 0.94664 1.20878 1.32380 0.93979 1.09273 0.92318 1.24696 0.94415 0.98086 0.94737 1.70346 1.21862 1.11268 1.45181 0.87263 0.84867 0.80778 0.79602 1.19290 1.21361 1.20618 1.19756 1.01286 0.98951 0.87992 0.89390 1.20664 1.01203 0.94668 1.00595 1.22349 1.00939 0.96258 1.02382 1.21594 0.98885 0.99932 0.93359 1.30767 1.16691 1.16203 1.10411 1.08154 0.78035 0.79238 0.75038 1.93465 1.41646 1.86578 1.72405 1.93515 1.86676 1.83302 1.32624 1.30515 1.12864 1.18227 1.10765 0.91831 0.95838 0.93797 0.94817 0.92778 0.98373 0.89901 0.92957 0.90548 0.91880 0.87606 0.90267 0.90892 0.90011 0.85629 0.85783 0.85944 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.61 37.15 0.32 -2.38 16 2 C -0.08 -1.73 2.49 -90.62 -0.23 -1.95 16 3 C -0.13 -2.86 7.49 37.16 0.28 -2.59 16 4 C 0.06 1.35 1.31 -91.77 -0.12 1.23 16 5 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 6 C -0.53 -12.96 6.00 -34.44 -0.21 -13.17 16 7 H 0.06 1.46 6.73 -52.49 -0.35 1.11 16 8 C 0.08 2.14 3.18 -17.82 -0.06 2.08 16 9 N -0.85 -22.05 10.08 55.43 0.56 -21.49 16 10 Si 0.85 19.92 29.38 -169.99 -4.99 14.92 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C -0.06 -1.08 1.19 -93.42 -0.11 -1.19 16 15 H 0.09 1.69 5.44 -51.93 -0.28 1.41 16 16 C -0.13 -1.98 4.11 -30.52 -0.13 -2.11 16 17 C -0.18 -2.26 5.79 -27.45 -0.16 -2.42 16 18 C -0.10 -1.04 5.60 -26.74 -0.15 -1.19 16 19 C -0.61 -6.61 6.49 38.03 0.25 -6.36 16 20 S 2.41 36.57 4.89 -107.50 -0.53 36.04 16 21 O -0.94 -16.83 14.11 -57.93 -0.82 -17.64 16 22 O -0.96 -17.83 18.05 -57.93 -1.05 -18.87 16 23 C -0.59 -9.65 5.04 38.29 0.19 -9.46 16 24 H 0.06 1.40 6.77 -51.93 -0.35 1.05 16 25 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.04 0.84 6.48 -51.93 -0.34 0.50 16 27 H 0.03 0.64 5.98 -51.93 -0.31 0.33 16 28 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 29 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.08 2.03 4.61 -51.93 -0.24 1.79 16 31 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.08 1.15 5.77 -51.93 -0.30 0.85 16 33 H 0.06 0.87 6.72 -51.93 -0.35 0.52 16 34 H 0.11 1.47 4.47 -51.93 -0.23 1.24 16 35 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.79 6.41 -51.93 -0.33 0.46 16 38 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.12 1.09 8.14 -51.92 -0.42 0.67 16 40 H 0.12 1.65 7.69 -51.74 -0.40 1.25 16 41 H 0.16 2.90 6.05 -51.74 -0.31 2.58 16 LS Contribution 301.01 15.07 4.54 4.54 Total: -1.00 -29.72 301.01 -8.68 -38.40 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.28 Total: 3.61 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: -0.12 Total: -39.51 kcal Atomic # 7 Polarization: -22.05 SS G_CDS: 0.56 Total: -21.49 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.86 Total: -36.52 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.99 Total: 14.92 kcal Atomic # 16 Polarization: 36.57 SS G_CDS: -0.53 Total: 36.04 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.72 -8.68 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260406119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.867 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds