Wall clock time and date at job start Mon Mar 30 2020 08:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47509 * 2 1 4 4 C 1.53006 * 109.47077 * 120.00153 * 2 1 3 5 5 H 1.09000 * 109.47043 * 187.37614 * 4 2 1 6 6 C 1.50706 * 109.46757 * 307.37582 * 4 2 1 7 7 H 1.07991 * 119.99584 * 120.81785 * 6 4 2 8 8 C 1.37874 * 119.99901 * 300.54234 * 6 4 2 9 9 N 1.31515 * 120.00318 * 329.11614 * 8 6 4 10 10 Si 1.86796 * 119.99954 * 149.11597 * 8 6 4 11 11 H 1.48502 * 109.47064 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47255 * 119.99685 * 10 8 6 13 13 H 1.48500 * 109.47549 * 240.00095 * 10 8 6 14 14 C 1.53001 * 109.47114 * 67.37626 * 4 2 1 15 15 H 1.09003 * 109.22494 * 302.59415 * 14 4 2 16 16 C 1.44549 * 109.22813 * 62.00356 * 14 4 2 17 17 C 1.53300 * 115.20218 * 184.22335 * 16 14 4 18 18 C 1.51258 * 105.01340 * 266.60259 * 17 16 14 19 19 C 1.54653 * 109.55906 * 105.23280 * 18 17 16 20 20 S 1.82283 * 111.13598 * 320.51350 * 19 18 17 21 21 O 1.42110 * 107.93721 * 74.41693 * 20 19 18 22 22 O 1.42098 * 107.94367 * 203.70118 * 20 19 18 23 23 C 1.55148 * 109.22945 * 183.22548 * 14 4 2 24 24 H 1.09000 * 109.47391 * 302.72162 * 1 2 3 25 25 H 1.09011 * 109.47145 * 62.71426 * 1 2 3 26 26 H 1.08998 * 109.47800 * 182.71619 * 1 2 3 27 27 H 1.09001 * 109.47290 * 240.00104 * 2 1 3 28 28 H 1.08999 * 109.46913 * 172.27310 * 3 2 1 29 29 H 1.09004 * 109.46931 * 292.27373 * 3 2 1 30 30 H 1.09001 * 109.46937 * 52.27188 * 3 2 1 31 31 H 0.96993 * 120.00166 * 180.02562 * 9 8 6 32 32 H 1.09003 * 108.33224 * 305.70821 * 16 14 4 33 33 H 1.08999 * 108.33488 * 62.92087 * 16 14 4 34 34 H 1.09004 * 110.32369 * 25.48218 * 17 16 14 35 35 H 1.09008 * 110.32050 * 147.73375 * 17 16 14 36 36 H 1.09001 * 109.45587 * 225.25691 * 18 17 16 37 37 H 1.08996 * 109.45762 * 345.20477 * 18 17 16 38 38 H 1.09002 * 109.14846 * 80.94368 * 19 18 17 39 39 H 1.09004 * 109.14590 * 200.14296 * 19 18 17 40 40 H 1.09000 * 109.44662 * 285.27430 * 23 14 4 41 41 H 1.09001 * 109.44760 * 45.18536 * 23 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1219 -0.6085 1.3177 6 6 1.3941 -0.1240 2.4729 7 1 0.8030 -0.7454 3.1292 8 6 1.5628 1.2145 2.7576 9 7 2.6728 1.8266 2.4070 10 14 0.2147 2.1585 3.6413 11 1 -0.9239 1.2478 3.9235 12 1 0.7449 2.6994 4.9186 13 1 -0.2489 3.2787 2.7838 14 6 1.6868 -2.2073 1.1601 15 1 0.6080 -2.3136 1.0454 16 6 2.3469 -2.7854 0.0114 17 6 2.0055 -4.2537 -0.2673 18 6 3.0806 -5.0473 0.4413 19 6 2.4953 -5.6810 1.7249 20 16 1.3596 -4.5304 2.5669 21 8 0.1510 -4.4838 1.8207 22 8 1.2981 -4.9005 3.9375 23 6 2.1335 -2.9179 2.4649 24 1 -0.3634 0.5555 0.8646 25 1 -0.3634 0.4712 -0.9134 26 1 -0.3634 -1.0264 0.0487 27 1 1.8933 -0.5138 -0.8900 28 1 3.1212 1.4455 0.1382 29 1 1.7939 1.9149 -0.9510 30 1 1.5683 1.9947 0.8128 31 1 2.7915 2.7681 2.6076 32 1 2.0812 -2.1986 -0.8680 33 1 3.4239 -2.7087 0.1602 34 1 1.0242 -4.4980 0.1394 35 1 2.0328 -4.4519 -1.3389 36 1 3.4452 -5.8346 -0.2185 37 1 3.9051 -4.3855 0.7066 38 1 1.9531 -6.5888 1.4602 39 1 3.3108 -5.9363 2.4015 40 1 3.2172 -3.0351 2.4615 41 1 1.8365 -2.3178 3.3250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260406119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:26:15 Heat of formation + Delta-G solvation = -85.160867 kcal Electronic energy + Delta-G solvation = -21410.609681 eV Core-core repulsion = 18417.479828 eV Total energy + Delta-G solvation = -2993.129853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19029 -38.01318 -37.01384 -36.84814 -34.25253 -33.30887 -30.32126 -28.65564 -27.51125 -26.90870 -24.48644 -22.44945 -21.73716 -20.08940 -19.48478 -18.20348 -17.59894 -17.45001 -16.73348 -16.38027 -15.84645 -15.37923 -15.19810 -14.70280 -14.57447 -14.33212 -14.25965 -13.78659 -13.25052 -13.17614 -13.11687 -13.03866 -12.85219 -12.72357 -12.61545 -12.53027 -12.32290 -11.96181 -11.84824 -11.76294 -11.63440 -11.52196 -11.24903 -11.00291 -10.79801 -10.65728 -10.40725 -9.61911 -8.17471 -5.92315 -0.80748 1.32924 1.42944 1.50927 2.04781 2.46495 2.84140 3.09056 3.11769 3.66043 3.82864 3.93575 4.04708 4.15041 4.34756 4.51366 4.58846 4.62943 4.68383 4.75532 4.89180 4.95073 5.01397 5.06955 5.13735 5.22450 5.25605 5.39132 5.39490 5.47653 5.56511 5.63605 5.67561 5.69318 5.79709 5.98696 6.09525 6.15521 6.52393 7.02519 7.55927 8.89768 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.007251 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.179445 B = 3860.634016 C = 4473.404914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.084 4.084 3 C -0.122 4.122 4 C 0.062 3.938 5 H 0.012 0.988 6 C -0.532 4.532 7 H 0.044 0.956 8 C 0.055 3.945 9 N -0.869 5.869 10 Si 0.885 3.115 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.278 1.278 14 C -0.055 4.055 15 H 0.069 0.931 16 C -0.136 4.136 17 C -0.181 4.181 18 C -0.103 4.103 19 C -0.579 4.579 20 S 2.411 3.589 21 O -0.978 6.978 22 O -1.006 7.006 23 C -0.602 4.602 24 H 0.037 0.963 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.259 0.741 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.363 -12.588 -6.931 14.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.103 4.103 3 C -0.179 4.179 4 C 0.043 3.957 5 H 0.030 0.970 6 C -0.569 4.569 7 H 0.062 0.938 8 C -0.146 4.146 9 N -0.507 5.507 10 Si 0.711 3.289 11 H -0.200 1.200 12 H -0.216 1.216 13 H -0.204 1.204 14 C -0.074 4.074 15 H 0.087 0.913 16 C -0.173 4.173 17 C -0.218 4.218 18 C -0.141 4.141 19 C -0.712 4.712 20 S 2.601 3.399 21 O -0.975 6.975 22 O -1.003 7.003 23 C -0.733 4.733 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.662 -12.616 -6.490 14.435 hybrid contribution -0.215 1.385 0.759 1.594 sum 2.446 -11.231 -5.731 12.844 Atomic orbital electron populations 1.21717 0.96559 1.00750 0.99652 1.21297 0.95135 0.95983 0.97860 1.22084 1.00456 0.97265 0.98102 1.18720 0.95305 0.89134 0.92557 0.96986 1.21128 1.31774 0.93955 1.10079 0.93760 1.25056 0.95262 0.98756 0.95574 1.70386 1.22521 1.11264 1.46495 0.86708 0.83381 0.79945 0.78840 1.19968 1.21617 1.20378 1.19596 1.00595 0.96887 0.90332 0.91273 1.20649 1.01615 0.96481 0.98560 1.22332 1.00879 0.94464 1.04149 1.21718 0.98319 1.00947 0.93107 1.30482 1.15880 1.14249 1.10565 1.07863 0.78519 0.79130 0.74385 1.93427 1.44501 1.86980 1.72580 1.93460 1.87679 1.83546 1.35592 1.30501 1.14826 1.19366 1.08612 0.94357 0.93794 0.93113 0.92322 0.94423 0.96648 0.92255 0.93072 0.90983 0.90481 0.89176 0.87991 0.87472 0.88812 0.83087 0.82643 0.83243 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 8.61 71.98 0.62 -4.58 16 2 C -0.08 -3.47 2.49 -10.79 -0.03 -3.50 16 3 C -0.12 -5.44 7.49 71.98 0.54 -4.90 16 4 C 0.06 2.73 1.31 -11.54 -0.02 2.72 16 5 H 0.01 0.58 8.09 -2.39 -0.02 0.56 16 6 C -0.53 -26.99 6.00 25.60 0.15 -26.84 16 7 H 0.04 2.33 6.73 -2.91 -0.02 2.31 16 8 C 0.06 2.88 3.18 84.65 0.27 3.15 16 9 N -0.87 -46.20 10.08 21.45 0.22 -45.98 16 10 Si 0.88 41.99 29.38 68.60 2.02 44.01 16 11 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 14 C -0.05 -1.94 1.19 -12.61 -0.01 -1.96 16 15 H 0.07 2.70 5.44 -2.39 -0.01 2.68 16 16 C -0.14 -3.70 4.11 28.14 0.12 -3.58 16 17 C -0.18 -3.81 5.79 30.13 0.17 -3.64 16 18 C -0.10 -1.58 5.60 30.59 0.17 -1.41 16 19 C -0.58 -9.71 6.49 72.55 0.47 -9.24 16 20 S 2.41 70.81 4.89 -56.49 -0.28 70.53 16 21 O -0.98 -34.67 14.11 -127.28 -1.80 -36.47 16 22 O -1.01 -37.17 18.05 -127.28 -2.30 -39.46 16 23 C -0.60 -19.64 5.04 72.72 0.37 -19.27 16 24 H 0.04 1.70 6.77 -2.39 -0.02 1.68 16 25 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.05 1.93 6.48 -2.39 -0.02 1.91 16 27 H 0.06 2.13 5.98 -2.39 -0.01 2.12 16 28 H 0.04 1.76 7.51 -2.39 -0.02 1.75 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 2.94 4.61 -2.39 -0.01 2.93 16 31 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 32 H 0.07 2.00 5.77 -2.39 -0.01 1.99 16 33 H 0.08 1.88 6.72 -2.39 -0.02 1.86 16 34 H 0.09 2.28 4.47 -2.39 -0.01 2.27 16 35 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.29 6.41 -2.39 -0.02 1.27 16 38 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.15 3.83 7.69 -2.51 -0.02 3.81 16 41 H 0.13 4.88 6.05 -2.51 -0.02 4.87 16 Total: -1.00 -66.74 301.01 1.70 -65.04 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 1.02 Total: 15.39 kcal Atomic # 6 Polarization: -75.87 SS G_CDS: 2.82 Total: -73.05 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.22 Total: -45.98 kcal Atomic # 8 Polarization: -71.84 SS G_CDS: -4.09 Total: -75.93 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.02 Total: 44.01 kcal Atomic # 16 Polarization: 70.81 SS G_CDS: -0.28 Total: 70.53 kcal Total: -66.74 1.70 -65.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260406119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.120 kcal (2) G-P(sol) polarization free energy of solvation -66.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds