Wall clock time and date at job start Mon Mar 30 2020 07:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38261 * 119.99716 * 2 1 4 4 C 1.38214 * 119.99661 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00062 * 0.26318 * 5 4 3 7 7 C 1.50693 * 120.00162 * 179.71972 * 6 5 4 8 8 C 1.50697 * 115.55263 * 214.41138 * 7 6 5 9 9 O 1.20826 * 120.00141 * 145.58057 * 8 7 6 10 10 O 1.34236 * 120.00120 * 325.58301 * 8 7 6 11 11 C 1.45195 * 117.00010 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47906 * 330.00528 * 11 10 8 13 13 C 1.53006 * 109.46726 * 90.00571 * 11 10 8 14 14 C 1.50694 * 109.47214 * 209.99812 * 11 10 8 15 15 H 1.08001 * 120.00105 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00025 * 180.02562 * 14 11 10 17 17 N 1.31504 * 120.00064 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99868 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46927 * 90.00175 * 18 16 14 20 20 H 1.48501 * 109.46930 * 210.00010 * 18 16 14 21 21 H 1.48500 * 109.46981 * 330.00140 * 18 16 14 22 22 C 1.53003 * 117.50058 * 68.74231 * 7 6 5 23 23 C 1.53002 * 117.49810 * 0.08302 * 7 6 5 24 24 C 1.38211 * 120.00262 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47017 * 90.00158 * 1 2 3 26 26 H 1.09004 * 109.46834 * 210.00008 * 1 2 3 27 27 H 1.08997 * 109.47052 * 329.99488 * 1 2 3 28 28 H 1.07997 * 119.99874 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.99762 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.99676 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.47257 * 180.02562 * 13 11 10 32 32 H 1.09006 * 109.46792 * 299.99351 * 13 11 10 33 33 H 1.08996 * 109.47447 * 59.99558 * 13 11 10 34 34 H 0.97003 * 120.00400 * 179.97438 * 17 16 14 35 35 H 1.09006 * 117.49752 * 0.02562 * 22 7 6 36 36 H 1.08998 * 117.50452 * 145.01781 * 22 7 6 37 37 H 1.08999 * 117.50078 * 214.97730 * 23 7 6 38 38 H 1.08994 * 117.49744 * 0.02562 * 23 7 6 39 39 H 1.08004 * 119.99459 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 -0.0055 7 6 4.3342 -2.5019 -0.0119 8 6 3.6880 -3.6218 -0.7859 9 8 4.3738 -4.4231 -1.3753 10 8 2.3504 -3.7292 -0.8205 11 6 1.7972 -4.8320 -1.5860 12 1 2.4682 -5.0754 -2.4097 13 6 1.6393 -6.0539 -0.6787 14 6 0.4506 -4.4369 -2.1350 15 1 0.0507 -3.4549 -1.9295 16 6 -0.2710 -5.3290 -2.8996 17 7 0.2157 -6.5248 -3.1493 18 14 -1.9399 -4.8388 -3.5807 19 1 -1.7655 -4.2165 -4.9177 20 1 -2.7977 -6.0447 -3.7041 21 1 -2.5832 -3.8657 -2.6618 22 6 5.1135 -2.8740 1.2512 23 6 5.8628 -2.4351 -0.0094 24 6 2.1982 -1.1969 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3518 0.0002 0.0005 31 1 1.2245 -6.8820 -1.2533 32 1 2.6134 -6.3398 -0.2816 33 1 0.9683 -5.8107 0.1450 34 1 -0.2920 -7.1526 -3.6869 35 1 5.0807 -2.1750 2.0870 36 1 5.1589 -3.9288 1.5222 37 1 6.4010 -3.2014 -0.5672 38 1 6.3233 -1.4473 -0.0027 39 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733710956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:32 Heat of formation + Delta-G solvation = -44.228316 kcal Electronic energy + Delta-G solvation = -21319.043181 eV Core-core repulsion = 18192.244345 eV Total energy + Delta-G solvation = -3126.798836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34593 -38.86346 -36.94831 -35.38395 -33.27945 -32.30937 -30.65211 -29.56225 -26.71592 -25.38921 -24.97598 -22.77636 -22.35471 -21.26644 -20.48301 -18.88022 -17.28633 -16.82727 -16.07582 -15.71953 -15.07983 -14.90035 -14.53281 -14.42893 -14.12418 -13.51274 -13.24031 -12.91290 -12.55964 -12.25043 -12.15761 -11.93052 -11.84179 -11.55744 -11.32447 -11.18559 -11.07022 -10.94589 -10.65625 -10.54118 -10.39980 -10.30170 -10.20953 -9.68594 -9.55940 -8.90687 -8.50594 -8.47178 -8.34363 -6.19177 -4.25967 1.46796 1.63801 2.80728 3.23652 3.28713 3.31887 3.50641 3.82459 4.09882 4.31958 4.53276 4.78978 5.01494 5.07657 5.09473 5.14465 5.26904 5.39853 5.54450 5.59159 5.64852 5.87260 5.88341 5.93774 5.98927 6.05431 6.13608 6.36809 6.40622 6.61800 6.62806 6.83936 6.88618 6.90504 6.93629 7.14218 7.27424 7.58795 7.71520 7.92103 8.13071 8.62225 8.87508 9.39409 10.88350 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.006609 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.596888 B = 4235.911445 C = 5629.418959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.124 4.124 5 C -0.125 4.125 6 C -0.045 4.045 7 C -0.100 4.100 8 C 0.493 3.507 9 O -0.517 6.517 10 O -0.346 6.346 11 C 0.213 3.787 12 H 0.046 0.954 13 C -0.154 4.154 14 C -0.519 4.519 15 H 0.069 0.931 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.909 3.091 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.096 4.096 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.015 0.985 33 H 0.037 0.963 34 H 0.266 0.734 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 12.435 8.434 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.045 4.045 7 C -0.102 4.102 8 C 0.336 3.664 9 O -0.407 6.407 10 O -0.262 6.262 11 C 0.161 3.839 12 H 0.063 0.937 13 C -0.212 4.212 14 C -0.557 4.557 15 H 0.087 0.913 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.736 3.264 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.176 4.176 23 C -0.181 4.181 24 C -0.114 4.114 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.926 11.985 8.141 15.653 hybrid contribution -0.819 0.035 -0.578 1.003 sum 5.107 12.020 7.563 15.092 Atomic orbital electron populations 1.20794 0.91109 1.02513 1.02681 1.19968 0.96293 0.92878 0.99293 1.21014 0.94231 0.97385 1.01717 1.20954 0.94260 0.97414 1.01554 1.20931 0.99607 0.91804 1.01959 1.18755 0.93454 0.91350 1.00941 1.19749 0.93901 0.92979 1.03524 1.21930 0.82891 0.83419 0.78174 1.90593 1.64701 1.42637 1.42787 1.86441 1.19768 1.52586 1.67389 1.20680 0.93650 0.80415 0.89198 0.93651 1.22161 0.98025 1.01373 0.99635 1.21004 1.01362 1.01178 1.32132 0.91266 1.24873 0.98621 0.94689 0.95716 1.69893 1.38440 1.06003 1.38343 0.86309 0.82588 0.78098 0.79376 1.20419 1.20952 1.19532 1.23133 1.00457 1.03108 0.90919 1.23197 0.90540 1.03888 1.00434 1.21656 0.93473 0.99492 0.96734 0.90954 0.91039 0.92078 0.86510 0.86377 0.86186 0.88235 0.96619 0.94396 0.92409 0.87439 0.87766 0.86939 0.87398 0.82712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 36.01 0.36 -1.15 16 2 C -0.08 -1.26 5.88 -104.62 -0.62 -1.88 16 3 C -0.13 -1.62 9.70 -39.58 -0.38 -2.01 16 4 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 5 C -0.13 -1.67 9.39 -39.58 -0.37 -2.04 16 6 C -0.04 -0.72 5.44 -104.63 -0.57 -1.29 16 7 C -0.10 -1.67 2.50 -156.81 -0.39 -2.06 16 8 C 0.49 10.70 7.44 36.00 0.27 10.97 16 9 O -0.52 -12.49 15.48 -18.75 -0.29 -12.78 16 10 O -0.35 -8.18 6.55 -39.27 -0.26 -8.44 16 11 C 0.21 5.70 2.56 -27.88 -0.07 5.62 16 12 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 13 C -0.15 -3.90 9.32 37.16 0.35 -3.56 16 14 C -0.52 -14.38 8.90 -34.44 -0.31 -14.69 16 15 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 18 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 22 C -0.14 -1.81 9.94 -26.69 -0.27 -2.08 16 23 C -0.14 -1.89 9.38 -26.69 -0.25 -2.14 16 24 C -0.10 -1.66 8.73 -39.58 -0.35 -2.00 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 27 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.31 5.93 -52.49 -0.31 1.00 16 31 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 35 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.11 1.57 7.67 -51.93 -0.40 1.18 16 38 H 0.11 1.12 6.08 -51.93 -0.32 0.80 16 39 H 0.16 3.03 5.32 -52.48 -0.28 2.75 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -30.55 326.08 -8.45 -39.00 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.33 Total: 4.53 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -3.09 Total: -18.60 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.63 Total: -24.59 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.55 Total: -21.22 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.55 -8.45 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.229 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds