Wall clock time and date at job start Mon Mar 30 2020 07:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38261 * 119.99716 * 2 1 4 4 C 1.38214 * 119.99661 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00062 * 0.26318 * 5 4 3 7 7 C 1.50693 * 120.00162 * 179.71972 * 6 5 4 8 8 C 1.50697 * 115.55263 * 214.41138 * 7 6 5 9 9 O 1.20826 * 120.00141 * 145.58057 * 8 7 6 10 10 O 1.34236 * 120.00120 * 325.58301 * 8 7 6 11 11 C 1.45195 * 117.00010 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47906 * 330.00528 * 11 10 8 13 13 C 1.53006 * 109.46726 * 90.00571 * 11 10 8 14 14 C 1.50694 * 109.47214 * 209.99812 * 11 10 8 15 15 H 1.08001 * 120.00105 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00025 * 180.02562 * 14 11 10 17 17 N 1.31504 * 120.00064 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99868 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46927 * 90.00175 * 18 16 14 20 20 H 1.48501 * 109.46930 * 210.00010 * 18 16 14 21 21 H 1.48500 * 109.46981 * 330.00140 * 18 16 14 22 22 C 1.53003 * 117.50058 * 68.74231 * 7 6 5 23 23 C 1.53002 * 117.49810 * 0.08302 * 7 6 5 24 24 C 1.38211 * 120.00262 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47017 * 90.00158 * 1 2 3 26 26 H 1.09004 * 109.46834 * 210.00008 * 1 2 3 27 27 H 1.08997 * 109.47052 * 329.99488 * 1 2 3 28 28 H 1.07997 * 119.99874 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.99762 * 179.97438 * 4 3 2 30 30 H 1.08002 * 119.99676 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.47257 * 180.02562 * 13 11 10 32 32 H 1.09006 * 109.46792 * 299.99351 * 13 11 10 33 33 H 1.08996 * 109.47447 * 59.99558 * 13 11 10 34 34 H 0.97003 * 120.00400 * 179.97438 * 17 16 14 35 35 H 1.09006 * 117.49752 * 0.02562 * 22 7 6 36 36 H 1.08998 * 117.50452 * 145.01781 * 22 7 6 37 37 H 1.08999 * 117.50078 * 214.97730 * 23 7 6 38 38 H 1.08994 * 117.49744 * 0.02562 * 23 7 6 39 39 H 1.08004 * 119.99459 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 -0.0055 7 6 4.3342 -2.5019 -0.0119 8 6 3.6880 -3.6218 -0.7859 9 8 4.3738 -4.4231 -1.3753 10 8 2.3504 -3.7292 -0.8205 11 6 1.7972 -4.8320 -1.5860 12 1 2.4682 -5.0754 -2.4097 13 6 1.6393 -6.0539 -0.6787 14 6 0.4506 -4.4369 -2.1350 15 1 0.0507 -3.4549 -1.9295 16 6 -0.2710 -5.3290 -2.8996 17 7 0.2157 -6.5248 -3.1493 18 14 -1.9399 -4.8388 -3.5807 19 1 -1.7655 -4.2165 -4.9177 20 1 -2.7977 -6.0447 -3.7041 21 1 -2.5832 -3.8657 -2.6618 22 6 5.1135 -2.8740 1.2512 23 6 5.8628 -2.4351 -0.0094 24 6 2.1982 -1.1969 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3518 0.0002 0.0005 31 1 1.2245 -6.8820 -1.2533 32 1 2.6134 -6.3398 -0.2816 33 1 0.9683 -5.8107 0.1450 34 1 -0.2920 -7.1526 -3.6869 35 1 5.0807 -2.1750 2.0870 36 1 5.1589 -3.9288 1.5222 37 1 6.4010 -3.2014 -0.5672 38 1 6.3233 -1.4473 -0.0027 39 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733710956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:32 Heat of formation + Delta-G solvation = -59.256212 kcal Electronic energy + Delta-G solvation = -21319.694840 eV Core-core repulsion = 18192.244345 eV Total energy + Delta-G solvation = -3127.450494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84494 -40.20765 -38.37721 -37.06872 -35.36903 -33.34672 -31.98610 -31.41510 -27.77795 -27.50498 -26.46543 -23.98419 -23.51607 -22.80016 -21.99315 -20.42874 -18.77144 -18.69555 -17.57108 -17.30286 -16.77664 -16.54406 -15.95476 -15.66134 -15.26771 -14.88187 -14.58945 -14.29320 -14.08631 -14.05791 -13.61530 -13.27777 -13.17524 -13.04911 -12.91476 -12.85398 -12.53544 -12.43299 -12.27073 -12.17094 -11.87392 -11.66735 -11.55215 -11.48934 -11.35418 -10.99103 -10.63144 -9.58276 -9.40202 -8.31207 -6.47768 0.40121 0.55976 1.17553 1.38459 1.40579 1.52009 1.89902 2.37522 2.64391 2.98816 2.99757 3.38307 3.66045 3.75560 3.95684 4.07734 4.17219 4.35863 4.43284 4.50353 4.57745 4.63194 4.71492 4.74939 4.81618 4.82649 4.87173 4.91561 5.02640 5.11508 5.12297 5.26531 5.35400 5.45270 5.57979 5.60608 5.74422 5.81893 5.87569 6.04282 6.20721 6.56728 6.91536 7.23730 8.76842 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.006609 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.596888 B = 4235.911445 C = 5629.418959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.058 4.058 7 C -0.129 4.129 8 C 0.482 3.518 9 O -0.553 6.553 10 O -0.346 6.346 11 C 0.215 3.785 12 H 0.002 0.998 13 C -0.140 4.140 14 C -0.543 4.543 15 H 0.067 0.933 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.979 3.021 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.120 4.120 23 C -0.124 4.124 24 C -0.133 4.133 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.146 0.854 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.081 0.919 32 H 0.021 0.979 33 H 0.046 0.954 34 H 0.271 0.729 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.147 0.853 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 15.575 9.376 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.141 4.141 6 C -0.058 4.058 7 C -0.130 4.130 8 C 0.328 3.672 9 O -0.445 6.445 10 O -0.262 6.262 11 C 0.162 3.838 12 H 0.020 0.980 13 C -0.198 4.198 14 C -0.581 4.581 15 H 0.085 0.915 16 C -0.182 4.182 17 N -0.555 5.555 18 Si 0.802 3.198 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.157 4.157 23 C -0.160 4.160 24 C -0.151 4.151 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.164 0.836 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.164 0.836 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.428 15.131 9.103 18.792 hybrid contribution -0.889 -0.924 -0.859 1.543 sum 5.539 14.207 8.244 17.335 Atomic orbital electron populations 1.20807 0.90588 1.03221 1.02402 1.20175 0.97013 0.93069 0.99631 1.21375 0.94996 0.97461 1.00409 1.21435 0.94117 0.98537 0.99191 1.21240 1.01089 0.90855 1.00879 1.18807 0.92952 0.92014 1.02054 1.19833 0.95670 0.91651 1.05874 1.23114 0.81888 0.84381 0.77852 1.90557 1.64939 1.44515 1.44469 1.86522 1.21547 1.51301 1.66817 1.20370 0.92765 0.81980 0.88702 0.98027 1.21970 0.98337 1.00233 0.99249 1.21244 1.02027 1.01475 1.33321 0.91493 1.25815 1.02515 0.94428 0.95489 1.70013 1.40010 1.06958 1.38560 0.85234 0.77611 0.78236 0.78702 1.19856 1.19886 1.18425 1.23326 0.97722 1.03672 0.90954 1.23389 0.87621 1.05510 0.99463 1.21513 0.94495 0.99007 1.00040 0.91679 0.92563 0.89138 0.83584 0.82525 0.83195 0.89995 0.96020 0.93518 0.91990 0.84278 0.88401 0.88208 0.83565 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.98 10.01 71.24 0.71 -2.27 16 2 C -0.10 -2.90 5.88 -19.86 -0.12 -3.02 16 3 C -0.12 -2.83 9.70 22.27 0.22 -2.61 16 4 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 5 C -0.12 -2.85 9.39 22.27 0.21 -2.64 16 6 C -0.06 -1.82 5.44 -19.87 -0.11 -1.92 16 7 C -0.13 -4.26 2.50 -53.68 -0.13 -4.39 16 8 C 0.48 22.00 7.44 71.24 0.53 22.53 16 9 O -0.55 -28.25 15.48 21.96 0.34 -27.91 16 10 O -0.35 -17.48 6.55 -51.48 -0.34 -17.81 16 11 C 0.21 12.24 2.56 29.85 0.08 12.32 16 12 H 0.00 0.12 7.16 -2.39 -0.02 0.11 16 13 C -0.14 -7.47 9.32 71.98 0.67 -6.79 16 14 C -0.54 -31.50 8.90 25.60 0.23 -31.27 16 15 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 16 C 0.02 0.96 5.30 84.66 0.45 1.41 16 17 N -0.92 -53.66 11.32 21.45 0.24 -53.41 16 18 Si 0.98 43.50 29.54 68.60 2.03 45.53 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 22 C -0.12 -2.91 9.94 30.62 0.30 -2.60 16 23 C -0.12 -2.98 9.38 30.62 0.29 -2.69 16 24 C -0.13 -4.70 8.73 22.27 0.19 -4.51 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.06 1.60 8.09 -2.38 -0.02 1.58 16 27 H 0.09 1.77 8.09 -2.39 -0.02 1.75 16 28 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.15 2.47 5.93 -2.91 -0.02 2.45 16 31 H 0.08 4.65 6.07 -2.39 -0.01 4.63 16 32 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 35 H 0.14 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.10 2.70 7.67 -2.39 -0.02 2.68 16 38 H 0.15 2.35 6.08 -2.39 -0.01 2.34 16 39 H 0.12 4.98 5.32 -2.91 -0.02 4.96 16 Total: -1.00 -70.99 326.08 7.06 -63.93 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.05 Total: 20.24 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 3.74 Total: -30.55 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.24 Total: -53.41 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: 0.00 Total: -45.73 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.99 7.06 -63.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733710956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.671 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds