Wall clock time and date at job start Mon Mar 30 2020 08:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99780 * 2 1 4 4 H 1.09006 * 109.46559 * 119.99649 * 3 2 1 5 5 C 1.52997 * 109.47387 * 239.99784 * 3 2 1 6 6 C 1.52998 * 109.47350 * 185.00090 * 5 3 2 7 7 O 1.45204 * 109.47223 * 0.02562 * 3 2 1 8 8 C 1.34222 * 117.00501 * 89.99461 * 7 3 2 9 9 O 1.20828 * 119.99928 * 0.02562 * 8 7 3 10 10 C 1.50692 * 120.00308 * 179.97438 * 8 7 3 11 11 C 1.50701 * 109.47387 * 180.02562 * 10 8 7 12 12 C 1.37640 * 120.12763 * 265.00207 * 11 10 8 13 13 C 1.38615 * 120.24345 * 179.74505 * 12 11 10 14 14 C 1.38651 * 120.50409 * 0.25778 * 13 12 11 15 15 C 1.37593 * 120.25207 * 0.02562 * 14 13 12 16 16 C 1.40701 * 120.12583 * 85.27773 * 11 10 8 17 17 C 1.41393 * 120.24499 * 359.97438 * 16 11 10 18 18 H 1.08002 * 120.00158 * 330.03012 * 17 16 11 19 19 C 1.39946 * 120.00148 * 150.03881 * 17 16 11 20 20 N 1.30819 * 120.00428 * 162.08378 * 19 17 16 21 21 Si 1.86804 * 119.99667 * 342.07987 * 19 17 16 22 22 H 1.48500 * 109.46965 * 95.39321 * 21 19 17 23 23 H 1.48497 * 109.46929 * 215.39142 * 21 19 17 24 24 H 1.48498 * 109.47070 * 335.39263 * 21 19 17 25 25 H 1.08001 * 119.99821 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99807 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.00185 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47048 * 305.00376 * 5 3 2 29 29 H 1.09004 * 109.46817 * 64.99805 * 5 3 2 30 30 H 1.08996 * 109.46860 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.47278 * 300.00145 * 6 5 3 32 32 H 1.09002 * 109.46730 * 60.00404 * 6 5 3 33 33 H 1.09001 * 109.46878 * 60.00305 * 10 8 7 34 34 H 1.09003 * 109.47548 * 300.00425 * 10 8 7 35 35 H 1.07997 * 119.87746 * 0.02562 * 12 11 10 36 36 H 1.08003 * 119.74582 * 180.22978 * 13 12 11 37 37 H 1.08000 * 119.87473 * 179.97438 * 14 13 12 38 38 H 1.07995 * 120.13235 * 179.97438 * 15 14 13 39 39 H 0.96991 * 120.00567 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 2.6901 1.3629 0.8901 5 6 2.9432 1.3863 -1.2492 6 6 3.8006 2.6519 -1.1879 7 8 1.1199 2.4088 0.0006 8 6 0.7242 2.8717 1.1967 9 8 1.1525 2.3716 2.2099 10 6 -0.2532 4.0158 1.2762 11 6 -0.5301 4.3406 2.7215 12 6 -1.6234 3.7948 3.3551 13 6 -1.8774 4.0877 4.6859 14 6 -1.0386 4.9362 5.3923 15 6 0.0568 5.4978 4.7776 16 6 0.3246 5.2076 3.4268 17 6 1.4477 5.7784 2.7848 18 1 1.9428 5.2446 1.9870 19 6 1.9179 7.0348 3.1833 20 7 3.1275 7.4134 2.8596 21 14 0.8180 8.1714 4.1773 22 1 1.1125 8.0052 5.6233 23 1 1.0722 9.5792 3.7789 24 1 -0.6048 7.8332 3.9198 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.5906 0.5106 -1.2951 29 1 2.3114 1.4180 -2.1369 30 1 4.4269 2.7099 -2.0780 31 1 3.1531 3.5276 -1.1420 32 1 4.4323 2.6201 -0.3001 33 1 -1.1831 3.7342 0.7821 34 1 0.1701 4.8905 0.7823 35 1 -2.2831 3.1323 2.8146 36 1 -2.7355 3.6520 5.1761 37 1 -1.2464 5.1578 6.4287 38 1 0.7086 6.1588 5.3295 39 1 3.4533 8.2844 3.1354 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761140713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:42:16 Heat of formation + Delta-G solvation = -76.572238 kcal Electronic energy + Delta-G solvation = -21225.604452 eV Core-core repulsion = 18097.403078 eV Total energy + Delta-G solvation = -3128.201374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.67395 -39.74296 -38.02642 -35.51933 -35.24802 -33.62158 -33.27825 -32.20211 -29.14033 -27.44685 -26.69208 -23.46446 -23.02041 -22.58120 -21.22730 -20.47423 -19.28652 -18.63434 -17.87417 -17.61851 -16.93752 -16.26747 -16.16714 -15.59663 -15.31931 -15.05652 -14.73758 -14.52042 -14.47131 -13.92629 -13.76724 -13.40230 -13.15841 -13.07841 -12.84258 -12.71479 -12.54900 -12.43788 -12.39289 -12.01355 -11.93222 -11.56341 -11.51771 -11.41590 -11.28767 -10.99595 -10.35111 -9.43306 -9.36289 -8.88984 -6.49186 0.71449 0.87781 1.25662 1.26649 1.36845 1.39679 1.49017 1.88426 2.12764 2.62708 3.50224 3.67185 3.90276 3.95114 4.07629 4.17278 4.21899 4.30119 4.43104 4.49293 4.52546 4.55817 4.67960 4.79591 4.89042 4.91229 4.95483 4.98443 5.11410 5.13244 5.32971 5.34211 5.47267 5.54437 5.65106 5.80222 5.83581 5.91344 6.01771 6.25331 6.42313 6.75475 6.86489 6.93547 8.18970 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.018420 B = 0.006363 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.761794 B = 4399.079427 C = 5608.929888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.182 4.182 3 C 0.100 3.900 4 H 0.064 0.936 5 C -0.102 4.102 6 C -0.157 4.157 7 O -0.353 6.353 8 C 0.466 3.534 9 O -0.531 6.531 10 C -0.048 4.048 11 C -0.184 4.184 12 C -0.073 4.073 13 C -0.229 4.229 14 C -0.086 4.086 15 C -0.254 4.254 16 C 0.084 3.916 17 C -0.473 4.473 18 H 0.054 0.946 19 C 0.048 3.952 20 N -0.849 5.849 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.249 1.249 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.150 0.850 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -9.190 -6.982 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.199 4.199 3 C 0.046 3.954 4 H 0.082 0.918 5 C -0.139 4.139 6 C -0.214 4.214 7 O -0.271 6.271 8 C 0.310 3.690 9 O -0.419 6.419 10 C -0.085 4.085 11 C -0.186 4.186 12 C -0.091 4.091 13 C -0.248 4.248 14 C -0.104 4.104 15 C -0.273 4.273 16 C 0.082 3.918 17 C -0.503 4.503 18 H 0.072 0.928 19 C -0.166 4.166 20 N -0.476 5.476 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.173 1.173 25 H 0.143 0.857 26 H 0.103 0.897 27 H 0.167 0.833 28 H 0.128 0.872 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.148 0.852 34 H 0.120 0.880 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.666 -9.197 -6.746 12.323 hybrid contribution 0.452 0.666 0.679 1.053 sum -4.214 -8.531 -6.067 11.285 Atomic orbital electron populations 1.23965 0.96271 1.02660 0.99038 1.23390 0.96973 0.97659 1.01913 1.21984 0.89477 0.83273 1.00682 0.91763 1.21592 0.97093 0.99793 0.95426 1.21794 0.99703 0.97669 1.02247 1.86549 1.58465 1.48964 1.33094 1.24271 0.80475 0.83216 0.81028 1.90615 1.54929 1.58793 1.37560 1.20066 0.97848 0.94329 0.96282 1.19446 0.98258 1.06372 0.94476 1.20916 0.96008 0.97081 0.95049 1.20887 1.03041 1.05612 0.95232 1.21017 0.93957 0.96184 0.99266 1.21142 1.02296 1.08593 0.95316 1.17728 0.90969 0.91515 0.91597 1.19339 1.10228 1.02838 1.17863 0.92780 1.26805 0.95340 0.99910 0.94548 1.69730 1.16386 1.21799 1.39663 0.85505 0.80864 0.76324 0.78516 1.19137 1.20366 1.17259 0.85665 0.89749 0.83293 0.87200 0.89636 0.89931 0.94374 0.94032 0.85172 0.87990 0.85319 0.85111 0.85810 0.88970 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.51 13.88 67.78 0.94 -3.57 16 2 C -0.18 -4.52 9.51 25.65 0.24 -4.28 16 3 C 0.10 3.03 2.49 29.85 0.07 3.11 16 4 H 0.06 2.30 7.15 -2.38 -0.02 2.29 16 5 C -0.10 -2.33 5.63 30.59 0.17 -2.16 16 6 C -0.16 -4.13 9.81 71.98 0.71 -3.43 16 7 O -0.35 -12.49 8.17 -51.34 -0.42 -12.91 16 8 C 0.47 19.30 6.73 71.23 0.48 19.78 16 9 O -0.53 -25.91 15.25 21.96 0.33 -25.57 16 10 C -0.05 -1.89 5.31 29.10 0.15 -1.74 16 11 C -0.18 -8.35 4.43 -19.40 -0.09 -8.43 16 12 C -0.07 -2.88 9.66 22.22 0.21 -2.67 16 13 C -0.23 -8.86 10.05 22.46 0.23 -8.63 16 14 C -0.09 -3.63 10.02 22.22 0.22 -3.40 16 15 C -0.25 -12.50 7.17 22.73 0.16 -12.33 16 16 C 0.08 4.38 5.10 -21.29 -0.11 4.27 16 17 C -0.47 -26.72 8.56 23.46 0.20 -26.52 16 18 H 0.05 3.30 7.00 -2.91 -0.02 3.28 16 19 C 0.05 2.63 5.41 85.26 0.46 3.09 16 20 N -0.85 -47.32 13.93 21.83 0.30 -47.02 16 21 Si 0.96 43.56 24.52 68.60 1.68 45.24 16 22 H -0.27 -11.61 6.71 99.48 0.67 -10.94 16 23 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.25 -11.33 6.86 99.48 0.68 -10.65 16 25 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 26 H 0.08 2.35 6.37 -2.91 -0.02 2.33 16 27 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 28 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.19 7.82 -2.39 -0.02 1.17 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.13 3.93 8.05 -2.39 -0.02 3.91 16 34 H 0.10 4.20 7.11 -2.39 -0.02 4.18 16 35 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 36 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 37 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 38 H 0.09 4.57 4.77 -2.91 -0.01 4.56 16 39 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 Total: -1.00 -66.96 325.75 6.93 -60.02 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.97 Total: 27.15 kcal Atomic # 6 Polarization: -50.98 SS G_CDS: 4.06 Total: -46.91 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.30 Total: -47.02 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.08 Total: -38.48 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.68 Total: 45.24 kcal Total: -66.96 6.93 -60.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761140713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.551 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds