Wall clock time and date at job start Mon Mar 30 2020 06:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46839 * 270.00250 * 3 2 1 5 5 H 1.48494 * 109.47256 * 29.99911 * 3 2 1 6 6 H 1.48498 * 109.47056 * 150.00475 * 3 2 1 7 7 C 1.37878 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99777 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47090 * 179.97438 * 10 9 7 12 12 O 1.20829 * 120.00300 * 359.97438 * 11 10 9 13 13 O 1.34264 * 119.99791 * 180.02562 * 11 10 9 14 14 C 1.35930 * 117.00140 * 185.77257 * 13 11 10 15 15 C 1.38763 * 120.17362 * 248.99681 * 14 13 11 16 16 C 1.37829 * 119.71392 * 180.09873 * 15 14 13 17 17 C 1.38965 * 120.62325 * 359.97438 * 16 15 14 18 18 C 1.37713 * 119.76697 * 359.74502 * 17 16 15 19 19 C 1.38418 * 120.17383 * 68.97326 * 14 13 11 20 20 C 1.50638 * 122.55421 * 180.73668 * 18 17 16 21 21 C 1.52724 * 110.59915 * 341.99889 * 20 18 17 22 22 C 1.53314 * 108.39371 * 51.14200 * 21 20 18 23 23 C 1.50652 * 117.69947 * 179.42011 * 17 16 15 24 24 H 0.97003 * 120.00194 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47267 * 59.99903 * 9 7 2 26 26 H 1.09001 * 109.47127 * 300.00119 * 9 7 2 27 27 H 1.09002 * 109.47013 * 59.99909 * 10 9 7 28 28 H 1.09001 * 109.47365 * 300.00135 * 10 9 7 29 29 H 1.07999 * 120.14459 * 0.12282 * 15 14 13 30 30 H 1.07999 * 119.69121 * 179.97438 * 16 15 14 31 31 H 1.08005 * 119.75034 * 0.05077 * 19 14 13 32 32 H 1.09001 * 109.25288 * 102.28681 * 20 18 17 33 33 H 1.09002 * 109.25169 * 221.71138 * 20 18 17 34 34 H 1.09004 * 109.68266 * 170.86869 * 21 20 18 35 35 H 1.09003 * 109.67836 * 291.41633 * 21 20 18 36 36 H 1.08998 * 109.68422 * 49.88781 * 22 21 20 37 37 H 1.08999 * 109.68235 * 170.40098 * 22 21 20 38 38 H 1.08996 * 109.25014 * 282.57551 * 23 17 16 39 39 H 1.08990 * 109.25421 * 42.01010 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5286 -2.6363 -0.0022 12 8 6.1327 -1.5899 -0.0036 13 8 6.2000 -3.7991 -0.0028 14 6 7.5522 -3.7310 0.1179 15 6 8.3660 -4.0685 -0.9542 16 6 9.7360 -3.9980 -0.8207 17 6 10.3104 -3.5915 0.3776 18 6 9.5047 -3.2504 1.4411 19 6 8.1246 -3.3241 1.3107 20 6 10.0597 -2.7862 2.7623 21 6 11.5321 -3.1706 2.8915 22 6 12.2688 -2.6936 1.6344 23 6 11.8144 -3.5512 0.4550 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6580 -3.1505 -0.8907 28 1 3.6587 -3.1501 0.8892 29 1 7.9278 -4.3847 -1.8892 30 1 10.3690 -4.2612 -1.6551 31 1 7.4926 -3.0615 2.1463 32 1 9.9638 -1.7026 2.8316 33 1 9.4951 -3.2488 3.5718 34 1 11.9607 -2.6918 3.7720 35 1 11.6223 -4.2532 2.9814 36 1 12.0280 -1.6481 1.4423 37 1 13.3441 -2.8026 1.7755 38 1 12.1951 -4.5648 0.5801 39 1 12.2107 -3.1304 -0.4690 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813077204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:15 Heat of formation + Delta-G solvation = -81.479304 kcal Electronic energy + Delta-G solvation = -20302.794626 eV Core-core repulsion = 17174.380466 eV Total energy + Delta-G solvation = -3128.414160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.14260 -39.66235 -37.11794 -35.46294 -33.67061 -32.69360 -31.49396 -30.07731 -28.82830 -26.62261 -24.12610 -23.18913 -22.59487 -21.69522 -20.10594 -19.42085 -17.79735 -17.17558 -16.73480 -16.08650 -15.82029 -15.21087 -14.85725 -14.42448 -14.17656 -14.10179 -13.83722 -13.43868 -13.14453 -12.89060 -12.73170 -12.59647 -12.34082 -11.99829 -11.72639 -11.46958 -11.17606 -11.07150 -10.94975 -10.75101 -10.47035 -10.38020 -10.21005 -10.04090 -9.77227 -9.29609 -8.86827 -8.58383 -8.46952 -6.09848 -4.10124 1.05285 1.23394 2.54689 2.99045 3.32492 3.39547 3.48401 3.69268 4.39293 4.42619 4.43820 4.61745 4.74377 4.83092 4.95685 5.09995 5.13104 5.24489 5.24750 5.27682 5.32666 5.55987 5.59699 5.64098 5.71763 5.77059 5.79678 5.90975 5.93162 6.02862 6.03605 6.20931 6.31560 6.43370 6.50543 6.67107 6.96240 7.19456 7.25841 7.67267 8.19032 8.43701 8.92190 9.51664 11.02645 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030027 B = 0.003556 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.256092 B = 7872.359310 C = 8287.762666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.093 4.093 11 C 0.454 3.546 12 O -0.492 6.492 13 O -0.303 6.303 14 C 0.093 3.907 15 C -0.123 4.123 16 C -0.106 4.106 17 C -0.085 4.085 18 C -0.061 4.061 19 C -0.127 4.127 20 C -0.082 4.082 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.078 4.078 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.515 -9.184 2.739 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.130 4.130 11 C 0.299 3.701 12 O -0.376 6.376 13 O -0.219 6.219 14 C 0.052 3.948 15 C -0.142 4.142 16 C -0.124 4.124 17 C -0.085 4.085 18 C -0.061 4.061 19 C -0.145 4.145 20 C -0.119 4.119 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.115 4.115 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 24.546 -8.719 2.724 26.191 hybrid contribution 0.222 0.909 -0.107 0.941 sum 24.768 -7.811 2.618 26.102 Atomic orbital electron populations 1.69901 1.06263 1.27120 1.50488 1.24948 0.94725 0.99187 0.94181 0.86811 0.80560 0.83439 0.78836 1.20117 1.21248 1.18638 1.21007 0.88709 0.94856 1.51995 0.90568 1.19502 0.97031 0.89412 0.98013 1.21595 0.82479 1.03785 1.05158 1.25224 0.92654 0.80675 0.71579 1.90654 1.70365 1.32418 1.44126 1.84713 1.17167 1.36366 1.83664 1.18503 0.81699 1.00886 0.93752 1.21032 0.93447 1.01924 0.97758 1.20974 0.93976 1.00121 0.97369 1.19631 0.95574 1.00064 0.93211 1.19410 0.92046 0.98975 0.95647 1.21328 0.95110 1.00645 0.97433 1.20494 0.96072 1.01540 0.93816 1.21539 0.94695 1.01426 0.97936 1.21560 0.99691 0.99984 0.94651 1.20448 0.91051 1.00683 0.99284 0.92548 0.95567 0.95963 0.88019 0.87983 0.85118 0.85457 0.85651 0.90321 0.90579 0.91360 0.91568 0.91489 0.91431 0.90626 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 10 C -0.09 -1.81 5.75 -27.88 -0.16 -1.97 16 11 C 0.45 8.74 7.73 36.00 0.28 9.01 16 12 O -0.49 -10.83 15.40 -18.75 -0.29 -11.12 16 13 O -0.30 -5.19 10.05 -23.63 -0.24 -5.43 16 14 C 0.09 1.47 5.27 -39.32 -0.21 1.27 16 15 C -0.12 -1.66 9.99 -39.54 -0.40 -2.06 16 16 C -0.11 -1.21 9.60 -39.46 -0.38 -1.59 16 17 C -0.08 -0.95 5.74 -104.57 -0.60 -1.55 16 18 C -0.06 -0.75 5.74 -104.63 -0.60 -1.35 16 19 C -0.13 -1.87 8.89 -39.30 -0.35 -2.22 16 20 C -0.08 -0.80 5.67 -28.05 -0.16 -0.96 16 21 C -0.12 -0.90 5.98 -26.71 -0.16 -1.06 16 22 C -0.12 -0.90 5.98 -26.70 -0.16 -1.06 16 23 C -0.08 -0.63 5.67 -28.04 -0.16 -0.79 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 26 H 0.02 0.55 7.53 -51.93 -0.39 0.16 16 27 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 28 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.13 1.08 8.05 -52.49 -0.42 0.66 16 31 H 0.13 1.82 8.05 -52.48 -0.42 1.39 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -32.45 324.53 -8.94 -41.40 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.84 Total: -2.84 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -3.57 Total: -17.65 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.77 Total: -26.74 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.53 Total: -16.55 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.45 -8.94 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813077204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.083 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds